Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

20324961 .. 20328232

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGCTTTCTCTCTCTCCTCCTCCTCCCCTCCTCCTCTCTCCCTTATTCCTCGCACCTCCTCCTCCCATGGCAGCAGACGCCTCTCCCTCTCCAAATTCCCCTCCTCCTCCTCCTCGCGCCCCAGAGTCTCCCGTTCCTCTTCTTCTGAGAAATCCTCCCCCGGCGGCGATAACGTTCCCAGCTCTTTTTGTATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTTCAGATGCAGCTGCAGGAAATTCAGGACAACATAAGGAGTAGGCGGAACAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTGCAACACCGGATAAAGATGGCGAAGGATTTCAATGAGAGTGGTGAGGAAGAGTCCAATGAGATGCCTGACATTCCATCATCCATCCCTTTTCTCCCTTCTGTGACACCAAAGACTTTGAAGCAACTCTACCTCACAAGCGCAACATTTATATCTGGGATAATTGTATTTGGGGGCCTTATTGCACCGACGCTGGAACTTAAATTAGGCATAGGAGGTACCTCATATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGTCAGGTTGATCCCATTGTGGCATCCTTTTCGGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTATTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTATGCTTGAGCGTCAATCCTATATCAGTATCTAATGCATCTGACCACCCTTTGCGAGTGCCCACAACTCAGAGGTGTTTAAATTGCTCCGGTGCTGGAAAGGTAATGTGCCCAACATGTCTGTGCACCGGGATGATGATGGCGAGCGAGCATGACCCACGGATAGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

33.55

Weight (kDa)

8.28

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	536
AccII	CGCG	1 cut(s)	121
AciI	CCGC	3 cut(s)	168, 274, 316
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	2 cut(s)	590, 911
AcsI	RAATTY	2 cut(s)	98, 249
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	3 cut(s)	352, 439, 659
AluBI	AGCT	4 cut(s)	186, 241, 304, 662
AluI	AGCT	4 cut(s)	186, 241, 304, 662
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	2 cut(s)	136, 206
Alw44I	GTGCAC	1 cut(s)	874
AlwI	GGATC	2 cut(s)	590, 911
AoxI	GGCC	3 cut(s)	206, 493, 723
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	5 cut(s)	5, 75, 238, 241, 561
ApoI	RAATTY	2 cut(s)	98, 249
Asp700I	GAANNNNTTC	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	536
AspLEI	GCGC	2 cut(s)	123, 461
AspS9I	GGNCC	2 cut(s)	206, 493
AsuC2I	CCSGG	2 cut(s)	165, 880
AsuHPI	GGTGA	1 cut(s)	374
BaeGI	GKGCMC	3 cut(s)	813, 863, 878
BanI	GGYRCC	1 cut(s)	536
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
Bbv12I	GWGCWC	1 cut(s)	878
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	87, 228, 250, 573
BccI	CCATC	4 cut(s)	331, 403, 410, 883
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BcnI	CCSGG	2 cut(s)	165, 880
BcoDI	GTCTC	2 cut(s)	136, 206
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	1 cut(s)	242
BisI	GCNGC	6 cut(s)	6, 76, 169, 239, 242, 562
BlsI	GCNGC	6 cut(s)	7, 77, 170, 240, 243, 563
Bme1390I	CCNGG	2 cut(s)	165, 880
BmgT120I	GGNCC	2 cut(s)	206, 493
BmiI	GGNNCC	3 cut(s)	207, 494, 538
BmrFI	CCNGG	2 cut(s)	165, 880
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	4 cut(s)	225, 372, 617, 797
BmuI	ACTGGG	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	2 cut(s)	165, 880
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	70, 163, 706, 908
BsaWI	WCCGGW	2 cut(s)	327, 839
Bse1I	ACTGG	1 cut(s)	718
BseDI	CCNNGG	4 cut(s)	70, 163, 706, 908
BseGI	GGATG	4 cut(s)	398, 402, 608, 888
BseMII	CTCAG	3 cut(s)	141, 296, 833
BseNI	ACTGG	1 cut(s)	718
BseSI	GKGCMC	3 cut(s)	813, 863, 878
BseXI	GCAGC	4 cut(s)	87, 228, 250, 573
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	208, 495, 725
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	878
BsiSI	CCGG	5 cut(s)	165, 209, 328, 840, 879
BsmAI	GTCTC	2 cut(s)	136, 206
BsmBI	CGTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	208, 495, 725
Bsp1286I	GDGCHC	3 cut(s)	813, 863, 878
Bsp143I	GATC	2 cut(s)	595, 916
Bsp19I	CCATGG	2 cut(s)	70, 706
BspACI	CCGC	3 cut(s)	168, 274, 316
BspANI	GGCC	3 cut(s)	208, 495, 725
BspCNI	CTCAG	3 cut(s)	142, 297, 832
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	207, 494, 538
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	2 cut(s)	590, 911
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	4 cut(s)	70, 163, 706, 908
BssMI	GATC	2 cut(s)	595, 916
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	70, 706
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	3 cut(s)	148, 294, 363
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstC8I	GCNNGC	3 cut(s)	566, 895, 899
BstDEI	CTNAG	3 cut(s)	150, 305, 819
BstDSI	CCRYGG	3 cut(s)	70, 706, 908
BstF5I	GGATG	4 cut(s)	398, 402, 608, 888
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	123, 461
BstKTI	GATC	2 cut(s)	598, 919
BstMAI	GTCTC	2 cut(s)	136, 206
BstMBI	GATC	2 cut(s)	595, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 702
BstNSI	RCATGY	2 cut(s)	568, 870
BstSCI	CCNGG	2 cut(s)	163, 878
BstSFI	CTRYAG	1 cut(s)	242
BstSLI	GKGCMC	3 cut(s)	813, 863, 878
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	87, 228, 250, 573
BstX2I	RGATCY	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	208, 495, 725
BtgI	CCRYGG	3 cut(s)	70, 706, 908
BtsCI	GGATG	4 cut(s)	398, 402, 608, 888
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	566, 895, 899
CfoI	GCGC	2 cut(s)	123, 461
Cfr13I	GGNCC	2 cut(s)	206, 493
CseI	GACGC	3 cut(s)	90, 517, 751
Csp6I	GTAC	1 cut(s)	537
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	7 cut(s)	71, 295, 565, 577, 707, 867, 902
CviJI	RGCY	8 cut(s)	5, 186, 208, 241, 304, 495, 662, 725
CviKI_1	RGCY	8 cut(s)	5, 186, 208, 241, 304, 495, 662, 725
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	150, 305, 819
DpnI	GATC	2 cut(s)	597, 918
DpnII	GATC	2 cut(s)	595, 916
DraI	TTTAAA	1 cut(s)	831
Eam1104I	CTCTTC	3 cut(s)	148, 294, 363
EarI	CTCTTC	3 cut(s)	148, 294, 363
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	70, 706
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	70, 706
EcoT22I	ATGCAT	2 cut(s)	570, 790
ErhI	CCWWGG	2 cut(s)	70, 706
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
FatI	CATG	7 cut(s)	70, 294, 564, 576, 706, 866, 901
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	6 cut(s)	6, 76, 169, 239, 242, 562
FokI	GGATG	4 cut(s)	385, 389, 595, 895
Fsp4HI	GCNGC	6 cut(s)	6, 76, 169, 239, 242, 562
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	2 cut(s)	122, 460
GluI	GCNGC	6 cut(s)	6, 76, 169, 239, 242, 562
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	208, 495, 725
HapII	CCGG	5 cut(s)	165, 209, 328, 840, 879
HgaI	GACGC	3 cut(s)	90, 517, 751
HhaI	GCGC	2 cut(s)	123, 461
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
Hin6I	GCGC	2 cut(s)	121, 459
HinP1I	GCGC	2 cut(s)	121, 459
HinfI	GANTC	2 cut(s)	129, 371
HpaII	CCGG	5 cut(s)	165, 209, 328, 840, 879
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	876
Hpy188I	TCNGA	4 cut(s)	151, 234, 793, 822
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	876
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	337, 426
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 702
HpyF3I	CTNAG	3 cut(s)	150, 305, 819
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
HspAI	GCGC	2 cut(s)	121, 459
KpnI	GGTACC	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	595, 916
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	4 cut(s)	87, 228, 250, 573
LweI	GCATC	4 cut(s)	225, 372, 617, 797
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	597, 918
MboI	GATC	2 cut(s)	595, 916
MboII	GAAGA	6 cut(s)	135, 138, 311, 380, 560, 697
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	3 cut(s)	813, 863, 878
MluCI	AATT	6 cut(s)	98, 249, 480, 521, 581, 832
MlyI	GAGTC	2 cut(s)	138, 380
Mph1103I	ATGCAT	2 cut(s)	570, 790
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	519, 584, 830
MslI	CAYNNNNRTG	2 cut(s)	871, 881
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	5 cut(s)	165, 209, 328, 840, 879
MspR9I	CCNGG	2 cut(s)	165, 880
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	81, 702
NciI	CCSGG	2 cut(s)	165, 880
NcoI	CCATGG	2 cut(s)	70, 706
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	595, 916
NlaIII	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
NlaIV	GGNNCC	3 cut(s)	207, 494, 538
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	2 cut(s)	570, 790
NspI	RCATGY	2 cut(s)	568, 870
PaeI	GCATGC	1 cut(s)	568
PciI	ACATGT	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	347
PkrI	GCNGC	6 cut(s)	7, 77, 170, 240, 243, 563
PleI	GAGTC	2 cut(s)	137, 379
PpsI	GAGTC	2 cut(s)	137, 379
PscI	ACATGT	1 cut(s)	866
Psp1406I	AACGTT	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	207, 494, 538
PspPI	GGNCC	2 cut(s)	206, 493
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	871, 881
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	519, 584, 830
SatI	GCNGC	6 cut(s)	6, 76, 169, 239, 242, 562
Sau3AI	GATC	2 cut(s)	595, 916
Sau96I	GGNCC	2 cut(s)	206, 493
SchI	GAGTC	2 cut(s)	138, 380
ScrFI	CCNGG	2 cut(s)	165, 880
SduI	GDGCHC	3 cut(s)	813, 863, 878
SfaNI	GCATC	4 cut(s)	225, 372, 617, 797
SfcI	CTRYAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	871, 881
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	6 cut(s)	98, 249, 480, 521, 581, 832
SsiI	CCGC	3 cut(s)	168, 274, 316
SspMI	CTAG	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	163, 878
StyI	CCWWGG	2 cut(s)	70, 706
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	180
TasI	AATT	6 cut(s)	98, 249, 480, 521, 581, 832
TauI	GCSGC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	519, 584, 830
Tru9I	TTAA	3 cut(s)	519, 584, 830
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	5 cut(s)	5, 75, 238, 241, 561
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	544, 561
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	1 cut(s)	633
VneI	GTGCAC	1 cut(s)	874
XapI	RAATTY	2 cut(s)	98, 249
XceI	RCATGY	2 cut(s)	568, 870
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	732
Zsp2I	ATGCAT	2 cut(s)	570, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.