AT5G06180

Mitochondrial fission ELM1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003516
Physical Location & Seq
Forward (+)
1873116 .. 1876059
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06180.2

Sequence Viewer

Length: 1215 bp
ATGCGACGAACACAGCCACGGGAACTGGCCGTCACTGGTTTATCGGAGAATCTCCAAGGATGTGTTTTCCGCACGGTGAAACGAGCAGTTCTGATCGGAAACGGCTGCGCCGGCGCGGAGAATCAATGCATCGGTCTCCTTCGATCCTTAGGCCTCTTCGATCGCCACCTCTATTATAGAGTAGCTAAACCAAGAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTCTACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCGGATTATCCATTAACGCTACTGGAATCACGAATGTGTTTGAAGTAGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAAAACGTTTGAAAAGAATGGCCCGTTGTTAGTCGTGGCGTCTGGTAGTGATACTATTTCCGTCGCAAGCTCAATAAGACGACTGGCTATGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCAAGGTCGCATCTTGAGAGATTTGATCTAGTGATCACACCTCAACACGATTATTTTTCTTTAACACCTGAAGGGAAGAGGCAAATTCCTTTCTTTCTCAGACCATGGGTAACTCCACGTGAACATCCAGGTAGAAATGTGTTTCTCACTACTGGAGCTCTTCATTACGCCGACGCTTCTACTCTAAGAAATGCTACATCGGAATGGAAAAACGAGTTTGCTTCGCTGCCAAAGCCTTTGGTTGTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAGTTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCAAGAAGAACACCAAAGAAGGTTGTAGAAGTCATAACTGGAGAATTGAGCTCTAACTCTAAGGTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCAATACTTTTATCATAACTGCTGACTCTATAAGTATGTTGAGCGAGGCATGTAGTACCGGGAAACCCGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACTCTCCATGGTAGAGGAGCTGTTCGACCTTTGACCGGCAAAGAAGATATGTGTGAGAAGTGGAGTTACTCTCCTCTTAACGATAATGTAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCCAAGCGTGGCTGGGAAATCGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

404

Amino Acids

44.98

Weight (kDa)

9.52

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 37 - 394 6.2e-105 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AccI GTMKAC 1 cut(s) 891
AccII CGCG 1 cut(s) 116
AciI CCGC 3 cut(s) 70, 116, 920
AclI AACGTT 1 cut(s) 350
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 2 cut(s) 27, 1185
AcsI RAATTY 3 cut(s) 237, 549, 1046
AcuI CTGAAG 2 cut(s) 555, 767
AcvI CACGTG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 2 cut(s) 1000, 1039
AfiI CCNNNNNNNGG 3 cut(s) 197, 926, 1100
AgsI TTSAA 4 cut(s) 209, 308, 356, 1178
AjnI CCWGG 1 cut(s) 592
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 8 cut(s) 185, 414, 623, 801, 876, 938, 1085, 1160
AluI AGCT 8 cut(s) 185, 414, 623, 801, 876, 938, 1085, 1160
Alw21I GWGCWC 2 cut(s) 625, 878
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 138
AoxI GGCC 4 cut(s) 27, 151, 364, 1185
ApeKI GCWGC 4 cut(s) 105, 332, 691, 1160
ApoI RAATTY 3 cut(s) 237, 549, 1046
AspLEI GCGC 2 cut(s) 110, 116
AspS9I GGNCC 2 cut(s) 365, 725
AsuC2I CCSGG 1 cut(s) 1003
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 725
AxyI CCTNAGG 1 cut(s) 148
BalI TGGCCA 1 cut(s) 1187
BanII GRGCYC 2 cut(s) 625, 878
BarI GAAGNNNNNNTAC 2 cut(s) 1115, 1147
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 2 cut(s) 625, 878
BbvI GCAGC 4 cut(s) 92, 319, 678, 1147
BccI CCATC 1 cut(s) 896
BceAI ACGGC 2 cut(s) 14, 118
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 800
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 1 cut(s) 1003
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 494, 935
BfuI GTATCC 1 cut(s) 800
BglII AGATCT 1 cut(s) 1180
BisI GCNGC 4 cut(s) 106, 333, 692, 1161
BlsI GCNGC 4 cut(s) 107, 334, 693, 1162
Bme1390I CCNGG 2 cut(s) 594, 1003
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 2 cut(s) 365, 725
BmrFI CCNGG 2 cut(s) 594, 1003
BmsI GCATC 3 cut(s) 138, 307, 484
BpiI GAAGAC 1 cut(s) 1070
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
BpmI CTGGAG 3 cut(s) 639, 817, 885
BpuEI CTTGAG 2 cut(s) 500, 811
BpuMI CCSGG 1 cut(s) 1003
BsaAI YACGTR 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 5 cut(s) 17, 55, 467, 569, 1072
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 926, 1100
Bse118I RCCGGY 2 cut(s) 110, 1100
Bse1I ACTGG 6 cut(s) 30, 40, 292, 432, 622, 868
Bse21I CCTNAGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 17, 55, 467, 569, 1072
BseGI GGATG 4 cut(s) 65, 463, 589, 907
BseLI CCNNNNNNNGG 3 cut(s) 197, 926, 1100
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 6 cut(s) 30, 40, 292, 432, 622, 868
BseRI GAGGAG 2 cut(s) 1095, 1128
BseXI GCAGC 4 cut(s) 92, 319, 678, 1147
BseYI CCCAGC 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 29, 153, 366, 1187
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 625, 878
BsiSI CCGG 4 cut(s) 111, 267, 1002, 1101
BslFI GGGAC 1 cut(s) 942
BslI CCNNNNNNNGG 3 cut(s) 197, 926, 1100
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 942
BsnI GGCC 4 cut(s) 29, 153, 366, 1187
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 625, 878
Bsp1407I TGTACA 1 cut(s) 1037
Bsp143I GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
Bsp19I CCATGG 2 cut(s) 569, 1072
BspACI CCGC 3 cut(s) 70, 116, 920
BspANI GGCC 4 cut(s) 29, 153, 366, 1187
BspCNI CTCAG 1 cut(s) 576
BspFNI CGCG 1 cut(s) 116
BspPI GGATC 1 cut(s) 138
BspQI GCTCTTC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 110, 1100
BsrGI TGTACA 1 cut(s) 1037
BsrI ACTGG 6 cut(s) 30, 40, 292, 432, 622, 868
BssAI RCCGGY 2 cut(s) 110, 1100
BssECI CCNNGG 5 cut(s) 17, 55, 467, 569, 1072
BssMI GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 4 cut(s) 55, 467, 569, 1072
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 4 cut(s) 76, 740, 768, 1035
Bst6I CTCTTC 3 cut(s) 161, 536, 630
BstACI GRCGYC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 1037
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 112, 412
BstDEI CTNAG 5 cut(s) 148, 563, 650, 812, 885
BstDSI CCRYGG 3 cut(s) 17, 569, 1072
BstF5I GGATG 4 cut(s) 65, 463, 589, 907
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 2 cut(s) 110, 116
BstKTI GATC 7 cut(s) 96, 146, 163, 493, 501, 757, 1183
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 4 cut(s) 111, 338, 697, 807
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 996
BstSCI CCNGG 2 cut(s) 592, 1001
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 4 cut(s) 92, 319, 678, 1147
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 1 cut(s) 1180
BstYI RGATCY 1 cut(s) 1180
Bsu36I CCTNAGG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 800
BsuRI GGCC 4 cut(s) 29, 153, 366, 1187
BtgI CCRYGG 3 cut(s) 17, 569, 1072
BtsCI GGATG 4 cut(s) 65, 463, 589, 907
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 112, 412
CfoI GCGC 2 cut(s) 110, 116
Cfr10I RCCGGY 2 cut(s) 110, 1100
Cfr13I GGNCC 2 cut(s) 365, 725
CseI GACGC 2 cut(s) 372, 647
Csp6I GTAC 2 cut(s) 999, 1038
CviAII CATG 5 cut(s) 570, 993, 1041, 1073, 1212
CviQI GTAC 2 cut(s) 999, 1038
DdeI CTNAG 5 cut(s) 148, 563, 650, 812, 885
DpnI GATC 7 cut(s) 95, 145, 162, 492, 500, 756, 1182
DpnII GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
EaeI YGGCCR 2 cut(s) 27, 1185
Eam1104I CTCTTC 3 cut(s) 161, 536, 630
EarI CTCTTC 3 cut(s) 161, 536, 630
Ecl136II GAGCTC 2 cut(s) 623, 876
Eco130I CCWWGG 4 cut(s) 55, 467, 569, 1072
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 625, 878
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 725
Eco53kI GAGCTC 2 cut(s) 623, 876
Eco57I CTGAAG 2 cut(s) 555, 767
Eco72I CACGTG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 148
EcoICRI GAGCTC 2 cut(s) 623, 876
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 4 cut(s) 55, 467, 569, 1072
EcoT22I ATGCAT 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 625, 878
ErhI CCWWGG 4 cut(s) 55, 467, 569, 1072
FaeI CATG 5 cut(s) 573, 996, 1044, 1076, 1215
FalI AAGNNNNNCTT 2 cut(s) 805, 837
FaqI GGGAC 1 cut(s) 942
FatI CATG 5 cut(s) 569, 992, 1040, 1072, 1211
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 4 cut(s) 106, 333, 692, 1161
FokI GGATG 4 cut(s) 72, 450, 576, 914
FriOI GRGCYC 2 cut(s) 625, 878
Fsp4HI GCNGC 4 cut(s) 106, 333, 692, 1161
FspBI CTAG 2 cut(s) 494, 935
GlaI GCGC 2 cut(s) 109, 115
GluI GCNGC 4 cut(s) 106, 333, 692, 1161
GsaI CCCAGC 1 cut(s) 1201
GsuI CTGGAG 3 cut(s) 639, 817, 885
HaeIII GGCC 4 cut(s) 29, 153, 366, 1187
HapII CCGG 4 cut(s) 111, 267, 1002, 1101
HgaI GACGC 2 cut(s) 372, 647
HhaI GCGC 2 cut(s) 110, 116
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 5 cut(s) 573, 996, 1044, 1076, 1215
Hin6I GCGC 2 cut(s) 108, 114
HinP1I GCGC 2 cut(s) 108, 114
HinfI GANTC 7 cut(s) 49, 121, 201, 291, 968, 1066, 1174
HpaII CCGG 4 cut(s) 111, 267, 1002, 1101
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 587, 892, 1038
Hpy188I TCNGA 7 cut(s) 46, 93, 98, 566, 667, 786, 1054
Hpy188III TCNNGA 6 cut(s) 295, 479, 796, 828, 1060, 1178
Hpy8I GTNNAC 3 cut(s) 587, 892, 1038
Hpy99I CGWCG 3 cut(s) 9, 410, 641
HpyAV CCTTC 4 cut(s) 149, 215, 530, 838
HpyCH4III ACNGT 4 cut(s) 76, 740, 768, 1035
HpyCH4IV ACGT 2 cut(s) 350, 583
HpyCH4V TGCA 2 cut(s) 129, 460
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 338, 697, 807
HpyF3I CTNAG 5 cut(s) 148, 563, 650, 812, 885
HpySE526I ACGT 2 cut(s) 350, 583
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 5 cut(s) 573, 996, 1044, 1076, 1215
HspAI GCGC 2 cut(s) 108, 114
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 3 cut(s) 620, 798, 1082
Lsp1109I GCAGC 4 cut(s) 92, 319, 678, 1147
LweI GCATC 3 cut(s) 138, 307, 484
MaeI CTAG 2 cut(s) 494, 935
MaeII ACGT 2 cut(s) 350, 583
MaeIII GTNAC 3 cut(s) 31, 574, 1130
MalI GATC 7 cut(s) 95, 145, 162, 492, 500, 756, 1182
MboI GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
MboII GAAGA 6 cut(s) 148, 553, 617, 843, 1075, 1121
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 2 cut(s) 625, 878
MlsI TGGCCA 1 cut(s) 1187
MluCI AATT 4 cut(s) 237, 549, 869, 1046
MluNI TGGCCA 1 cut(s) 1187
MlyI GAGTC 2 cut(s) 962, 1060
Mox20I TGGCCA 1 cut(s) 1187
Mph1103I ATGCAT 1 cut(s) 131
MreI CGCCGGCG 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 1187
MseI TTAA 4 cut(s) 279, 527, 714, 1143
MslI CAYNNNNRTG 2 cut(s) 299, 667
Msp20I TGGCCA 1 cut(s) 1187
MspI CCGG 4 cut(s) 111, 267, 1002, 1101
MspR9I CCNGG 2 cut(s) 594, 1003
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 111, 338, 697, 807
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 1003
NcoI CCATGG 2 cut(s) 569, 1072
NdeII GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 5 cut(s) 573, 996, 1044, 1076, 1215
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 996
OliI CACNNNNGTG 1 cut(s) 299
PceI AGGCCT 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 5 cut(s) 49, 121, 201, 291, 1174
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 4 cut(s) 107, 334, 693, 1162
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 2 cut(s) 962, 1060
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 2 cut(s) 962, 1060
Ppu21I YACGTR 1 cut(s) 584
PpuMI RGGWCCY 1 cut(s) 725
Psp124BI GAGCTC 2 cut(s) 625, 878
Psp1406I AACGTT 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 592
PspCI CACGTG 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 1197
PspGI CCWGG 1 cut(s) 592
PspPI GGNCC 2 cut(s) 365, 725
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 1 cut(s) 1180
PvuI CGATCG 1 cut(s) 163
RsaI GTAC 2 cut(s) 1000, 1039
RsaNI GTAC 2 cut(s) 999, 1038
RseI CAYNNNNRTG 2 cut(s) 299, 667
SacI GAGCTC 2 cut(s) 625, 878
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 4 cut(s) 279, 527, 714, 1143
SatI GCNGC 4 cut(s) 106, 333, 692, 1161
Sau3AI GATC 7 cut(s) 93, 143, 160, 490, 498, 754, 1180
Sau96I GGNCC 2 cut(s) 365, 725
SchI GAGTC 2 cut(s) 962, 1060
ScrFI CCNGG 2 cut(s) 594, 1003
SduI GDGCHC 2 cut(s) 625, 878
SfaNI GCATC 3 cut(s) 138, 307, 484
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 299, 667
SmlI CTYRAG 2 cut(s) 479, 826
SmoI CTYRAG 2 cut(s) 479, 826
Sse9I AATT 4 cut(s) 237, 549, 869, 1046
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 3 cut(s) 70, 116, 920
SspI AATATT 1 cut(s) 718
SspMI CTAG 2 cut(s) 494, 935
SstI GAGCTC 2 cut(s) 625, 878
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 592, 1001
StyI CCWWGG 4 cut(s) 55, 467, 569, 1072
TaaI ACNGT 4 cut(s) 76, 740, 768, 1035
TaiI ACGT 2 cut(s) 353, 586
TaqI TCGA 4 cut(s) 142, 159, 1090, 1206
TaqII GACCGA 1 cut(s) 122
TasI AATT 4 cut(s) 237, 549, 869, 1046
TatI WGTACW 1 cut(s) 1037
TfiI GAWTC 5 cut(s) 49, 121, 201, 291, 1174
Tru1I TTAA 4 cut(s) 279, 527, 714, 1143
Tru9I TTAA 4 cut(s) 279, 527, 714, 1143
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 105, 332, 691, 1160
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 230, 617
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 3 cut(s) 237, 549, 1046
XceI RCATGY 1 cut(s) 996
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 2 cut(s) 494, 935
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.