Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039988.1

Orthogroup ID

OG0003516

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039988.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

atacaacatccaaggtcacatctgcataggtttgatttggtgatagctcctcgtcatgattattacccgttgactcctcatgcacagaaacaaattccttggtttctccggaggtggattacccctcgtgaaccacctggcaaaaatgtggttctcaccattggagctcttcatcaggctgatcctgctgcacttaagcacgctgcttctgcctggcatgctgaactggcacctctcccgaagcccttgcttgtagtcaatataggaggcccttctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

10.27

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06180 AT5G06180 AT5G06180 AT5G06180
fragaria_vesca	FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490
malus_domestica	MD14G1031500.v1.1
prunus_persica	Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1
pyrus_communis	pycom14g02840
rosa_chinensis	RchiOBHm_Chr3g0474821
rosa_laevigata	RLG00000023892
rosa_multiflora	Rmu_sc0039988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406820
rosa_rugosa	Rorug03G0144200 Rorug03G0144300 Rorug03G0144400
rosa_samantha	Rh3AG193900 Rh3BG223800 Rh3CG218700 Rh3DG219700
rosa_wichuraiana	Rw3G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	136, 212
AluBI	AGCT	2 cut(s)	47, 167
AluI	AGCT	2 cut(s)	47, 167
Alw21I	GWGCWC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	188, 203
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	52, 148
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	175, 190
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	2 cut(s)	138, 214
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	189, 204
BlsI	GCNGC	2 cut(s)	190, 205
Bme1390I	CCNGG	2 cut(s)	138, 214
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	138, 214
BsaJI	CCNNGG	2 cut(s)	11, 98
BsaWI	WCCGGW	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	138, 214
BseDI	CCNNGG	2 cut(s)	11, 98
BseGI	GGATG	1 cut(s)	7
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	39, 66
BseXI	GCAGC	2 cut(s)	175, 190
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	11, 98
BssMI	GATC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	11, 98
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	138, 214
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	201, 219
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 209, 218, 227
BstNI	CCWGG	2 cut(s)	138, 214
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	136, 212
BstV1I	GCAGC	2 cut(s)	175, 190
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	201, 219
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	3 cut(s)	56, 80, 218
CviJI	RGCY	5 cut(s)	47, 167, 179, 244, 270
CviKI_1	RGCY	5 cut(s)	47, 167, 179, 244, 270
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	11, 98
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	136, 212
EcoT14I	CCWWGG	2 cut(s)	11, 98
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	11, 98
FaeI	CATG	3 cut(s)	59, 83, 221
FaiI	YATR	5 cut(s)	27, 57, 81, 219, 263
FatI	CATG	3 cut(s)	55, 79, 217
Fnu4HI	GCNGC	2 cut(s)	189, 204
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	189, 204
GluI	GCNGC	2 cut(s)	189, 204
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	3 cut(s)	59, 83, 221
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	52, 148
Hpy166II	GTNNAC	2 cut(s)	72, 131
Hpy188III	TCNNGA	4 cut(s)	56, 109, 128, 238
Hpy8I	GTNNAC	2 cut(s)	72, 131
HpyCH4V	TGCA	3 cut(s)	25, 83, 191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 209, 218, 227
Hsp92II	CATG	3 cut(s)	59, 83, 221
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	52, 164
LpnPI	CCDG	9 cut(s)	122, 123, 150, 161, 198, 199, 212, 226, 261
Lsp1109I	GCAGC	2 cut(s)	175, 190
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	6 cut(s)	60, 87, 105, 135, 243, 260
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	138, 214
MvaI	CCWGG	2 cut(s)	138, 214
MwoI	GCNNNNNNNGC	4 cut(s)	185, 209, 218, 227
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	59, 83, 221
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PagI	TCATGA	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	190, 205
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	136, 212
PspGI	CCWGG	2 cut(s)	136, 212
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	189, 204
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	138, 214
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	7 cut(s)	17, 32, 49, 116, 139, 169, 235
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	136, 212
StyI	CCWWGG	2 cut(s)	11, 98
TasI	AATT	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	188, 203
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.