Rroxscaffold_6G00406820

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003516
Physical Location & Seq
Reverse (-)
29385409 .. 29389360
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406820.1

Sequence Viewer

Length: 1197 bp
ATGGCGGAGATGGTCCAAGGTGGGACCCAGGGAGCTATCAGGCGAGCCATTGTGATCGGAAATGGGTTTGCCGGAGCAGAGAATCAGAGCATTGGTCTGGTTCGTGCTCTGGGTCTATCTGATCGTCATTCTATTTATGTGAGTATCATATATGTTTCGGATTCTTTACCAAGAGGAGGAATTAACAGATGGCTTCCATGGCTTCCACTTTCTCTGCATAAAAAAGTAGACTATGTCATCTCAGGGATGCCCTTTTCTGCAGAAAAGATAGGCCTCTCATCTGGTGTTGTGGAAGCTGATGCAAAGCAGATTGCAAATATGGCTCGTAACACATTTGACAAAGAAGGCCCGTTGCTGGTTGTTGCATCTGGTCGGGATACCATTCCTGTTGCAAGCGCCATAAAACGTTTAGCTCCAGAAAATGTTTTTCTTGTCCAGATACAACATCCAAGGTCACATCTGCATCGGTTTGATTTGGTGATAGCTCCTCGTCATGATTATTACCCATTGACTCCTCATGCACAGAAACAAATTCCTTGGTTTCTCCGGAGGTGGATTACCCCTCGTGAACCACCTGGCAAAAATGTGGTCCTCACCATTGGAGCTCTTCATCAGGCTGATCCTGCTGCACTTAAGAGTGCTGCTTCTGCCTGGCACGCTGAACTGGCACCTCTCCCGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGAAACTGTTCATATGGTGTGGATCTTGCGAAACAGTTGGCAGCTATGCTGCAGAATGTTCTGTGGAGCTGTGGAAGTGTGAGAATTTCTTTCTCTAGAAGAACTCCTGAGAAGGTGTCCAGACTTCTTATAAGAGAATTCAGTAATAATCCAAAAGTCTACATTTGGGATGGCGAAGGTAGCAATCCACATATGGGCCATCTAGCCTTGGCAGATGCTTTTATCATCACTGCTGATTCAGTCAGCATGTTGAGTGAGGCTTGCAGTACCGGCAAACCTGTGTATGTGATTGGCGCTGAACACTGTACGTGGAAGTTCACAGACTTCCAGAACCGTCTGGAGGAACGGGGAGTAGTTCGACCATTCACTGGTAAAGAGGATATGTCCAAGTGTTGGAGCTATGTTCCACTTAATGACACTGCCGAGGCTGCTAGTCAGGTGATCAAGGCCCTTGCTGAGCGGGGATGGAGTATAATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

398

Amino Acids

43.62

Weight (kDa)

9.22

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 24 - 389 1.8e-110 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 667
AccB7I CCANNNNNTGG 2 cut(s) 1082, 1107
AccBSI CCGCTC 1 cut(s) 1174
AccI GTMKAC 2 cut(s) 228, 873
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 2 cut(s) 5, 1174
AclI AACGTT 1 cut(s) 406
AclWI GGATC 2 cut(s) 614, 744
AcsI RAATTY 3 cut(s) 531, 798, 851
AfaI GTAC 2 cut(s) 982, 1021
AfiI CCNNNNNNNGG 6 cut(s) 176, 355, 908, 1054, 1082, 1107
AflII CTTAAG 1 cut(s) 632
AjnI CCWGG 3 cut(s) 27, 574, 650
AluBI AGCT 8 cut(s) 35, 296, 413, 485, 605, 758, 783, 1113
AluI AGCT 8 cut(s) 35, 296, 413, 485, 605, 758, 783, 1113
Alw21I GWGCWC 2 cut(s) 109, 607
AlwI GGATC 2 cut(s) 614, 744
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 5 cut(s) 271, 346, 706, 910, 1161
ApeKI GCWGC 5 cut(s) 626, 641, 755, 763, 1142
ApoI RAATTY 3 cut(s) 531, 798, 851
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
Asp700I GAANNNNTTC 1 cut(s) 721
AspLEI GCGC 2 cut(s) 398, 1010
AspS9I GGNCC 7 cut(s) 13, 24, 347, 589, 707, 910, 1162
AsuHPI GGTGA 3 cut(s) 490, 586, 1165
AvaII GGWCC 3 cut(s) 13, 24, 589
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 607
BauI CACGAG 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 109, 607
BbvI GCAGC 5 cut(s) 613, 628, 750, 767, 1129
BccI CCATC 5 cut(s) 4, 183, 878, 921, 1173
BcgI CGANNNNNNTGC 2 cut(s) 667, 701
BciT130I CCWGG 3 cut(s) 29, 576, 652
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 1155
BfaI CTAG 3 cut(s) 810, 917, 1146
BfmI CTRYAG 2 cut(s) 258, 764
BfoI RGCGCY 2 cut(s) 399, 1011
BfrI CTTAAG 1 cut(s) 632
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 5 cut(s) 627, 642, 756, 764, 1143
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 5 cut(s) 628, 643, 757, 765, 1144
Bme1390I CCNGG 3 cut(s) 29, 576, 652
Bme18I GGWCC 3 cut(s) 13, 24, 589
BmgT120I GGNCC 7 cut(s) 13, 24, 347, 589, 707, 910, 1162
BmiI GGNNCC 3 cut(s) 25, 26, 669
BmrFI CCNGG 3 cut(s) 29, 576, 652
BmsI GCATC 5 cut(s) 237, 289, 374, 472, 919
BpmI CTGGAG 2 cut(s) 399, 1073
Bpu1102I GCTNAGC 1 cut(s) 1170
BsaAI YACGTR 1 cut(s) 1023
BsaJI CCNNGG 8 cut(s) 16, 27, 28, 197, 449, 536, 921, 1137
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 355, 908, 1054, 1082, 1107
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 2 cut(s) 669, 1087
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 3 cut(s) 29, 576, 652
BseDI CCNNGG 8 cut(s) 16, 27, 28, 197, 449, 536, 921, 1137
BseGI GGATG 4 cut(s) 252, 445, 889, 1184
BseLI CCNNNNNNNGG 6 cut(s) 176, 355, 908, 1054, 1082, 1107
BseMII CTCAG 3 cut(s) 255, 813, 1161
BseNI ACTGG 2 cut(s) 669, 1087
BseRI GAGGAG 3 cut(s) 189, 477, 504
BseXI GCAGC 5 cut(s) 613, 628, 750, 767, 1129
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 5 cut(s) 273, 348, 708, 912, 1163
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 2 cut(s) 109, 607
BsiSI CCGG 3 cut(s) 72, 547, 984
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 6 cut(s) 176, 355, 908, 1054, 1082, 1107
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 5 cut(s) 273, 348, 708, 912, 1163
Bsp1286I GDGCHC 2 cut(s) 109, 607
Bsp13I TCCGGA 1 cut(s) 546
Bsp143I GATC 5 cut(s) 54, 121, 619, 736, 1155
Bsp1720I GCTNAGC 1 cut(s) 1170
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 2 cut(s) 5, 1174
BspANI GGCC 5 cut(s) 273, 348, 708, 912, 1163
BspCNI CTCAG 3 cut(s) 254, 814, 1162
BspEI TCCGGA 1 cut(s) 546
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 3 cut(s) 25, 26, 669
BspMAI CTGCAG 2 cut(s) 262, 768
BspPI GGATC 2 cut(s) 614, 744
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 667
BspTI CTTAAG 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 1174
BsrFI RCCGGY 1 cut(s) 983
BsrI ACTGG 2 cut(s) 669, 1087
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 8 cut(s) 16, 27, 28, 197, 449, 536, 921, 1137
BssMI GATC 5 cut(s) 54, 121, 619, 736, 1155
BssSI CACGAG 1 cut(s) 564
BssT1I CCWWGG 5 cut(s) 16, 197, 449, 536, 921
Bst2BI CACGAG 1 cut(s) 564
Bst2UI CCWGG 3 cut(s) 29, 576, 652
Bst4CI ACNGT 4 cut(s) 722, 750, 1019, 1049
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 1023
BstC8I GCNNGC 4 cut(s) 45, 394, 657, 976
BstDEI CTNAG 3 cut(s) 241, 822, 1170
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 4 cut(s) 252, 445, 889, 1184
BstH2I RGCGCY 2 cut(s) 399, 1011
BstHHI GCGC 2 cut(s) 398, 1010
BstKTI GATC 5 cut(s) 57, 124, 622, 739, 1158
BstMBI GATC 5 cut(s) 54, 121, 619, 736, 1155
BstMWI GCNNNNNNNGC 9 cut(s) 199, 320, 623, 647, 656, 665, 894, 984, 1142
BstNI CCWGG 3 cut(s) 29, 576, 652
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 3 cut(s) 27, 574, 650
BstSFI CTRYAG 2 cut(s) 258, 764
BstV1I GCAGC 5 cut(s) 613, 628, 750, 767, 1129
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 5 cut(s) 273, 348, 708, 912, 1163
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 4 cut(s) 252, 445, 889, 1184
BtsI GCAGTG 2 cut(s) 942, 1131
BtsIMutI CAGTG 4 cut(s) 942, 1015, 1080, 1131
Cac8I GCNNGC 4 cut(s) 45, 394, 657, 976
CciI TCATGA 1 cut(s) 493
CfoI GCGC 2 cut(s) 398, 1010
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 7 cut(s) 13, 24, 347, 589, 707, 910, 1162
Csp6I GTAC 2 cut(s) 981, 1020
CviAII CATG 4 cut(s) 198, 494, 518, 961
CviQI GTAC 2 cut(s) 981, 1020
DdeI CTNAG 3 cut(s) 241, 822, 1170
DpnI GATC 5 cut(s) 56, 123, 621, 738, 1157
DpnII GATC 5 cut(s) 54, 121, 619, 736, 1155
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 5 cut(s) 16, 197, 449, 536, 921
Eco147I AGGCCT 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 607
Eco47I GGWCC 3 cut(s) 13, 24, 589
Eco53kI GAGCTC 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 605
EcoO109I RGGNCCY 3 cut(s) 24, 707, 1162
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 3 cut(s) 27, 574, 650
EcoT14I CCWWGG 5 cut(s) 16, 197, 449, 536, 921
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 5 cut(s) 16, 197, 449, 536, 921
FaeI CATG 4 cut(s) 201, 497, 521, 964
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 197, 493, 517, 960
FauI CCCGC 1 cut(s) 1167
FauNDI CATATG 2 cut(s) 727, 906
FbaI TGATCA 1 cut(s) 1155
FblI GTMKAC 2 cut(s) 228, 873
Fnu4HI GCNGC 5 cut(s) 627, 642, 756, 764, 1143
FokI GGATG 4 cut(s) 259, 432, 896, 1191
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 5 cut(s) 627, 642, 756, 764, 1143
FspBI CTAG 3 cut(s) 810, 917, 1146
GlaI GCGC 2 cut(s) 397, 1009
GluI GCNGC 5 cut(s) 627, 642, 756, 764, 1143
GsuI CTGGAG 2 cut(s) 399, 1073
HaeII RGCGCY 2 cut(s) 399, 1011
HaeIII GGCC 5 cut(s) 273, 348, 708, 912, 1163
HapII CCGG 3 cut(s) 72, 547, 984
HhaI GCGC 2 cut(s) 398, 1010
Hin1II CATG 4 cut(s) 201, 497, 521, 964
Hin6I GCGC 2 cut(s) 396, 1008
HinP1I GCGC 2 cut(s) 396, 1008
HinfI GANTC 4 cut(s) 82, 161, 511, 950
HpaII CCGG 3 cut(s) 72, 547, 984
HphI GGTGA 3 cut(s) 490, 586, 1165
Hpy166II GTNNAC 4 cut(s) 229, 569, 874, 1032
Hpy188I TCNGA 4 cut(s) 59, 87, 121, 160
Hpy8I GTNNAC 4 cut(s) 229, 569, 874, 1032
HpyAV CCTTC 4 cut(s) 338, 720, 820, 884
HpyCH4III ACNGT 4 cut(s) 722, 750, 1019, 1049
HpyCH4IV ACGT 2 cut(s) 406, 1022
HpyF10VI GCNNNNNNNGC 9 cut(s) 199, 320, 623, 647, 656, 665, 894, 984, 1142
HpyF3I CTNAG 3 cut(s) 241, 822, 1170
HpySE526I ACGT 2 cut(s) 406, 1022
Hsp92II CATG 4 cut(s) 201, 497, 521, 964
HspAI GCGC 2 cut(s) 396, 1008
KflI GGGWCCC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 1155
Kzo9I GATC 5 cut(s) 54, 121, 619, 736, 1155
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 7 cut(s) 32, 74, 418, 490, 602, 780, 1110
Lsp1109I GCAGC 5 cut(s) 613, 628, 750, 767, 1129
LweI GCATC 5 cut(s) 237, 289, 374, 472, 919
MaeI CTAG 3 cut(s) 810, 917, 1146
MaeII ACGT 2 cut(s) 406, 1022
MaeIII GTNAC 2 cut(s) 326, 453
MalI GATC 5 cut(s) 56, 123, 621, 738, 1157
MbiI CCGCTC 1 cut(s) 1174
MboI GATC 5 cut(s) 54, 121, 619, 736, 1155
MboII GAAGA 2 cut(s) 599, 825
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 109, 607
MluCI AATT 5 cut(s) 180, 531, 798, 851, 1188
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 1088
MroI TCCGGA 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 721
MseI TTAA 3 cut(s) 183, 633, 1125
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 3 cut(s) 72, 547, 984
MspR9I CCNGG 3 cut(s) 29, 576, 652
MvaI CCWGG 3 cut(s) 29, 576, 652
MwoI GCNNNNNNNGC 9 cut(s) 199, 320, 623, 647, 656, 665, 894, 984, 1142
NcoI CCATGG 1 cut(s) 197
NdeI CATATG 2 cut(s) 727, 906
NdeII GATC 5 cut(s) 54, 121, 619, 736, 1155
NlaIII CATG 4 cut(s) 201, 497, 521, 964
NlaIV GGNNCC 3 cut(s) 25, 26, 669
NmeAIII GCCGAG 1 cut(s) 1162
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 1 cut(s) 964
PagI TCATGA 1 cut(s) 493
PasI CCCWGGG 1 cut(s) 28
PceI AGGCCT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 721
PfeI GAWTC 3 cut(s) 82, 161, 950
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 2 cut(s) 1082, 1107
PkrI GCNGC 5 cut(s) 628, 643, 757, 765, 1144
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 1023
PpuMI RGGWCCY 1 cut(s) 24
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 607
Psp1406I AACGTT 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 27, 574, 650
PspGI CCWGG 3 cut(s) 27, 574, 650
PspN4I GGNNCC 3 cut(s) 25, 26, 669
PspPI GGNCC 7 cut(s) 13, 24, 347, 589, 707, 910, 1162
PspPPI RGGWCCY 1 cut(s) 24
PstI CTGCAG 2 cut(s) 262, 768
PsuI RGATCY 1 cut(s) 736
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 982, 1021
RsaNI GTAC 2 cut(s) 981, 1020
SacI GAGCTC 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 3 cut(s) 183, 633, 1125
SatI GCNGC 5 cut(s) 627, 642, 756, 764, 1143
Sau3AI GATC 5 cut(s) 54, 121, 619, 736, 1155
Sau96I GGNCC 7 cut(s) 13, 24, 347, 589, 707, 910, 1162
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 3 cut(s) 29, 576, 652
SduI GDGCHC 2 cut(s) 109, 607
SfaNI GCATC 5 cut(s) 237, 289, 374, 472, 919
SfcI CTRYAG 2 cut(s) 258, 764
SinI GGWCC 3 cut(s) 13, 24, 589
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 5 cut(s) 180, 531, 798, 851, 1188
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 2 cut(s) 5, 1174
SspMI CTAG 3 cut(s) 810, 917, 1146
SstI GAGCTC 1 cut(s) 607
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 27, 574, 650
StyI CCWWGG 5 cut(s) 16, 197, 449, 536, 921
TaaI ACNGT 4 cut(s) 722, 750, 1019, 1049
TaiI ACGT 2 cut(s) 409, 1025
TaqI TCGA 1 cut(s) 1072
TasI AATT 5 cut(s) 180, 531, 798, 851, 1188
TfiI GAWTC 3 cut(s) 82, 161, 950
Tru1I TTAA 3 cut(s) 183, 633, 1125
Tru9I TTAA 3 cut(s) 183, 633, 1125
TscAI CASTG 4 cut(s) 949, 1022, 1087, 1138
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 5 cut(s) 626, 641, 755, 763, 1142
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 599, 714
TspRI CASTG 4 cut(s) 949, 1022, 1087, 1138
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 2 cut(s) 1082, 1107
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 3 cut(s) 13, 24, 589
XapI RAATTY 3 cut(s) 531, 798, 851
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 1 cut(s) 964
XmiI GTMKAC 2 cut(s) 228, 873
XmnI GAANNNNTTC 1 cut(s) 721
XspI CTAG 3 cut(s) 810, 917, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.