Rh3AG193900

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003516
Physical Location & Seq
Forward (+)
18835863 .. 18840363
4501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG193900.1

Sequence Viewer

Length: 813 bp
ATGGAAACACTAGATATCCGATTCTATCAGTTTCTCCCTGAAAATTTGTTTCAGATACAACATCCAAGGTCACATCTGCATAGGTTTGATTTGGTGATAGCTCCTCGTCATGATTATTACCCGTTGACTCCTCATGCACAGAAACAAATTCCTTGGTTTCTCCGGAGGTGGATTACCCCTCGTGAACCACCTGGCAAAAATGTGGTTCTCACCATTGGAGCTCTTCATCAGGCTGATCCTGCTGCACTTACGCGTGCCGCTTCTGCCTGGCATGCTGAACTGGCACCTCTCCCGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGAAACTGTTCATATGGTGTGGATCTTGCGAAACAGTTGGCAGCTATGCTACAGAATGTTCTGTGGAGCTGTGGAAGTGTGAGAATTTCTTTCTCTAGAAGAACTCCTGAGAAGGTGTCCAGACTTCTTATAAGAGAATTCAGTAATAATCCAAAAGTCTACATTTGGGATGGCGAAGGTTGCAATCCACATATGGGCCATCTAGCCTTGGCAGATGCTTTTATGATCACTGCTGATTCAGTCAGCATGTTGAGTGAGGCTTGCAGTACTGGCAAACCTGTGTATGTGATTGGCGCTGAACACTGTACATGGAAGTTCACAGACTTCCAGAACCGTCTGGAGGAACGGGGAGTAGTTCGACCATTCACTGGTAAAGAGGATATGTCCAAGTGTTGGACCTATGTTCCACTTAATGACACTGCCGAGGCTGCTAGTCAGGTGATCAAGGCCCTTGCTGAGCGGGGATGGAGTATACTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

270

Amino Acids

30.41

Weight (kDa)

8.52

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 17 - 261 1.6e-88 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 283
AccB7I CCANNNNNTGG 2 cut(s) 698, 723
AccBSI CCGCTC 1 cut(s) 790
AccI GTMKAC 2 cut(s) 489, 802
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 2 cut(s) 258, 790
AclWI GGATC 2 cut(s) 230, 360
AcsI RAATTY 4 cut(s) 43, 147, 414, 467
AfaI GTAC 2 cut(s) 598, 637
AfiI CCNNNNNNNGG 4 cut(s) 524, 670, 698, 723
AflIII ACRYGT 1 cut(s) 251
AjnI CCWGG 2 cut(s) 190, 266
AluBI AGCT 4 cut(s) 101, 221, 374, 399
AluI AGCT 4 cut(s) 101, 221, 374, 399
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 2 cut(s) 230, 360
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 3 cut(s) 322, 526, 777
ApeKI GCWGC 3 cut(s) 242, 371, 758
ApoI RAATTY 4 cut(s) 43, 147, 414, 467
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 4 cut(s) 323, 526, 726, 778
AsuHPI GGTGA 3 cut(s) 106, 202, 781
AvaII GGWCC 1 cut(s) 726
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 229, 383, 745
BccI CCATC 3 cut(s) 494, 537, 789
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 2 cut(s) 192, 268
BclI TGATCA 2 cut(s) 555, 771
BfaI CTAG 4 cut(s) 11, 426, 533, 762
BfmI CTRYAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 627
BisI GCNGC 4 cut(s) 243, 258, 372, 759
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 4 cut(s) 244, 259, 373, 760
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 192, 268
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 4 cut(s) 323, 526, 726, 778
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 192, 268
BmsI GCATC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 786
BsaJI CCNNGG 4 cut(s) 65, 152, 537, 753
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 4 cut(s) 524, 670, 698, 723
Bse1I ACTGG 3 cut(s) 285, 604, 703
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 2 cut(s) 192, 268
BseDI CCNNGG 4 cut(s) 65, 152, 537, 753
BseGI GGATG 3 cut(s) 61, 505, 800
BseLI CCNNNNNNNGG 4 cut(s) 524, 670, 698, 723
BseMII CTCAG 2 cut(s) 429, 777
BseNI ACTGG 3 cut(s) 285, 604, 703
BseRI GAGGAG 2 cut(s) 93, 120
BseXI GCAGC 3 cut(s) 229, 383, 745
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 3 cut(s) 324, 528, 779
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 4 cut(s) 524, 670, 698, 723
BsnI GGCC 3 cut(s) 324, 528, 779
Bsp1286I GDGCHC 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 4 cut(s) 235, 352, 555, 771
Bsp1720I GCTNAGC 1 cut(s) 786
BspACI CCGC 2 cut(s) 258, 790
BspANI GGCC 3 cut(s) 324, 528, 779
BspCNI CTCAG 2 cut(s) 430, 778
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 230, 360
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 790
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 3 cut(s) 285, 604, 703
BssECI CCNNGG 4 cut(s) 65, 152, 537, 753
BssMI GATC 4 cut(s) 235, 352, 555, 771
BssNAI GTATAC 1 cut(s) 803
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 3 cut(s) 65, 152, 537
Bst1107I GTATAC 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 192, 268
Bst4CI ACNGT 4 cut(s) 338, 366, 635, 665
Bst6I CTCTTC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 255, 273, 592
BstDEI CTNAG 2 cut(s) 438, 786
BstF5I GGATG 3 cut(s) 61, 505, 800
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 4 cut(s) 238, 355, 558, 774
BstMBI GATC 4 cut(s) 235, 352, 555, 771
BstMWI GCNNNNNNNGC 7 cut(s) 239, 263, 272, 281, 510, 600, 758
BstNI CCWGG 2 cut(s) 192, 268
BstNSI RCATGY 2 cut(s) 275, 580
BstSCI CCNGG 2 cut(s) 190, 266
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 229, 383, 745
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BstZ17I GTATAC 1 cut(s) 803
BsuRI GGCC 3 cut(s) 324, 528, 779
BtsCI GGATG 3 cut(s) 61, 505, 800
BtsI GCAGTG 2 cut(s) 558, 747
BtsIMutI CAGTG 4 cut(s) 558, 631, 696, 747
Cac8I GCNNGC 3 cut(s) 255, 273, 592
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 4 cut(s) 323, 526, 726, 778
Csp6I GTAC 2 cut(s) 597, 636
CviAII CATG 5 cut(s) 110, 134, 272, 577, 639
CviQI GTAC 2 cut(s) 597, 636
DdeI CTNAG 2 cut(s) 438, 786
DpnI GATC 4 cut(s) 237, 354, 557, 773
DpnII GATC 4 cut(s) 235, 352, 555, 771
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 65, 152, 537
Eco24I GRGCYC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 726
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoO109I RGGNCCY 2 cut(s) 323, 778
EcoRI GAATTC 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 190, 266
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 3 cut(s) 65, 152, 537
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 3 cut(s) 65, 152, 537
FaeI CATG 5 cut(s) 113, 137, 275, 580, 642
FatI CATG 5 cut(s) 109, 133, 271, 576, 638
FauI CCCGC 1 cut(s) 783
FauNDI CATATG 2 cut(s) 343, 522
FbaI TGATCA 2 cut(s) 555, 771
FblI GTMKAC 2 cut(s) 489, 802
Fnu4HI GCNGC 4 cut(s) 243, 258, 372, 759
FokI GGATG 3 cut(s) 48, 512, 807
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 4 cut(s) 243, 258, 372, 759
FspBI CTAG 4 cut(s) 11, 426, 533, 762
GlaI GCGC 1 cut(s) 625
GluI GCNGC 4 cut(s) 243, 258, 372, 759
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 3 cut(s) 324, 528, 779
HapII CCGG 1 cut(s) 163
HhaI GCGC 1 cut(s) 626
Hin1II CATG 5 cut(s) 113, 137, 275, 580, 642
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 3 cut(s) 21, 127, 566
HpaII CCGG 1 cut(s) 163
HphI GGTGA 3 cut(s) 106, 202, 781
Hpy166II GTNNAC 5 cut(s) 126, 185, 490, 648, 803
Hpy188I TCNGA 2 cut(s) 20, 54
Hpy8I GTNNAC 5 cut(s) 126, 185, 490, 648, 803
HpyAV CCTTC 3 cut(s) 336, 436, 500
HpyCH4III ACNGT 4 cut(s) 338, 366, 635, 665
HpyCH4V TGCA 5 cut(s) 79, 137, 245, 513, 594
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 263, 272, 281, 510, 600, 758
HpyF3I CTNAG 2 cut(s) 438, 786
Hsp92II CATG 5 cut(s) 113, 137, 275, 580, 642
HspAI GCGC 1 cut(s) 624
Kpn2I TCCGGA 1 cut(s) 162
Ksp22I TGATCA 2 cut(s) 555, 771
Kzo9I GATC 4 cut(s) 235, 352, 555, 771
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 106, 218, 396
Lsp1109I GCAGC 3 cut(s) 229, 383, 745
LweI GCATC 1 cut(s) 535
MaeI CTAG 4 cut(s) 11, 426, 533, 762
MaeIII GTNAC 1 cut(s) 69
MalI GATC 4 cut(s) 237, 354, 557, 773
MbiI CCGCTC 1 cut(s) 790
MboI GATC 4 cut(s) 235, 352, 555, 771
MboII GAAGA 2 cut(s) 215, 441
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 4 cut(s) 43, 147, 414, 467
MluI ACGCGT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 704
MroI TCCGGA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 1 cut(s) 741
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 2 cut(s) 192, 268
MvaI CCWGG 2 cut(s) 192, 268
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 7 cut(s) 239, 263, 272, 281, 510, 600, 758
NdeI CATATG 2 cut(s) 343, 522
NdeII GATC 4 cut(s) 235, 352, 555, 771
NlaIII CATG 5 cut(s) 113, 137, 275, 580, 642
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 69
NspI RCATGY 2 cut(s) 275, 580
PaeI GCATGC 1 cut(s) 275
PagI TCATGA 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 21, 566
PflMI CCANNNNNTGG 2 cut(s) 698, 723
PkrI GCNGC 4 cut(s) 244, 259, 373, 760
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PsiI TTATAA 1 cut(s) 461
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 190, 266
PspGI CCWGG 2 cut(s) 190, 266
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 4 cut(s) 323, 526, 726, 778
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 598, 637
RsaNI GTAC 2 cut(s) 597, 636
SacI GAGCTC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 4 cut(s) 243, 258, 372, 759
Sau3AI GATC 4 cut(s) 235, 352, 555, 771
Sau96I GGNCC 4 cut(s) 323, 526, 726, 778
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 192, 268
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 726
SphI GCATGC 1 cut(s) 275
Sse9I AATT 4 cut(s) 43, 147, 414, 467
SsiI CCGC 2 cut(s) 258, 790
SspMI CTAG 4 cut(s) 11, 426, 533, 762
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 190, 266
StyI CCWWGG 3 cut(s) 65, 152, 537
TaaI ACNGT 4 cut(s) 338, 366, 635, 665
TaqI TCGA 1 cut(s) 688
TasI AATT 4 cut(s) 43, 147, 414, 467
TatI WGTACW 2 cut(s) 596, 635
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 21, 566
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 4 cut(s) 565, 638, 703, 754
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 3 cut(s) 242, 371, 758
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 215, 330
TspRI CASTG 4 cut(s) 565, 638, 703, 754
Van91I CCANNNNNTGG 2 cut(s) 698, 723
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 4 cut(s) 43, 147, 414, 467
XbaI TCTAGA 1 cut(s) 425
XceI RCATGY 2 cut(s) 275, 580
XmiI GTMKAC 2 cut(s) 489, 802
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 4 cut(s) 11, 426, 533, 762
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.