RchiOBHm_Chr3g0474821

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003516
Physical Location & Seq
Forward (+)
20580545 .. 20584545
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44036

Sequence Viewer

Length: 1179 bp
ATGGCGGAGATGGTACAAGGTGGGACCCAGGGAGCTATCAGACGGGCCATTGTGATCGGAAATGGGTTTGCCGGAGCAGAGAATCAGAGCATTGGCCTGGTTCGTGCTCTGGGTCTATCTGATCGTCATTCTATTTATCGAGTTACTAGACCAAGAGGAGGAATTAACAGATGGCTTCCATGGCTTCCACTTTCTCTGCATAAGAAAGTAGACTATGTCATCTCAGGGATGCCCTTTTATGCAGAAAAGATAGGCCTCTCATCTGGTGTTGTGGAAGCTGATGCAAAGCAGATTGCAAATATGGCTCGTAACACATTTGACAAAGACGGCCCGTTGCTGGTAGTTGCATCTGGTCGGGATACCATTCCTGTTGCAAGCGCCATAAAACGTTTAGCTCCAGAAAATGTTTTTCTTGTCCAGATACAACATCCAAGGTCACATCTGCATAGGTTTGATTTGGTGATAGCTCCTCGTCATGATTATTACCCGTTGACTCCTCATGCACAGAAACAAATTCCTTGGTTTCTCCGGAGGTGGATTACCCCTCGTGAACCACCTGGCAAAAATGTGGTTCTCACCATTGGAGCTCTTCATCAGGCTGATCCTGCTGCACTTACGCGTGCCGCTTCTGCCTGGCATGCTGAACTGGCACCTCTCCCGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGAAACTGTTCATATGGTGTGGATCTTGCGAAACAGTTGGCAGCTATGCTACAGAATGTTCTGTGGAGCTGTGGAAGTGTGAGAATTTCTTTCTCTAGAAGAACTCCTGAGAAGGTGTCCAGACTTCTTATAAGAGAATTCAGTAATAATCCAAAAGTCTACATTTGGGATGGCGAAGGTTGCAATCCACATATGGGCCATCTAGCCTTGGCAGATGCTTTTATGATCACTGCTGATTCAGTCAGCATGTTGAGTGAGGCTTGCAGTACTGGCAAACCTGTGTATGTGATTGGCGCTGAACACTGTACATGGAAGTTCACAGACTTCCAGAACCGTCTGGAGGAACGGGGAGTAGTTCGACCATTCACTGGTAAAGAGGATATGTCCAAGTGTTGGACCTATGTTCCACTTAATGACACTGCCGAGGCTGCTAGTCAGGTGATCAAGGCCCTTGCTGAGCGGGGATGGAGTATACTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

392

Amino Acids

43.21

Weight (kDa)

9.43

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 24 - 383 1.7e-111 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 2 cut(s) 1064, 1089
AccBSI CCGCTC 1 cut(s) 1156
AccI GTMKAC 3 cut(s) 210, 855, 1168
AccII CGCG 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 528
AciI CCGC 3 cut(s) 5, 624, 1156
AclI AACGTT 1 cut(s) 388
AclWI GGATC 2 cut(s) 596, 726
AcsI RAATTY 3 cut(s) 513, 780, 833
AfaI GTAC 3 cut(s) 15, 964, 1003
AfiI CCNNNNNNNGG 6 cut(s) 158, 337, 890, 1036, 1064, 1089
AflIII ACRYGT 1 cut(s) 617
AjnI CCWGG 4 cut(s) 27, 96, 556, 632
AluBI AGCT 7 cut(s) 35, 278, 395, 467, 587, 740, 765
AluI AGCT 7 cut(s) 35, 278, 395, 467, 587, 740, 765
Alw21I GWGCWC 2 cut(s) 109, 589
AlwI GGATC 2 cut(s) 596, 726
Aor13HI TCCGGA 1 cut(s) 528
AoxI GGCC 7 cut(s) 45, 94, 253, 328, 688, 892, 1143
ApeKI GCWGC 3 cut(s) 608, 737, 1124
ApoI RAATTY 3 cut(s) 513, 780, 833
Asp700I GAANNNNTTC 1 cut(s) 703
AspLEI GCGC 2 cut(s) 380, 992
AspS9I GGNCC 7 cut(s) 24, 45, 329, 689, 892, 1092, 1144
AsuHPI GGTGA 3 cut(s) 472, 568, 1147
AvaII GGWCC 2 cut(s) 24, 1092
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 109, 589
BbvI GCAGC 3 cut(s) 595, 749, 1111
BccI CCATC 5 cut(s) 4, 165, 860, 903, 1155
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BciT130I CCWGG 4 cut(s) 29, 98, 558, 634
BciVI GTATCC 1 cut(s) 352
BclI TGATCA 2 cut(s) 921, 1137
BfaI CTAG 4 cut(s) 147, 792, 899, 1128
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 2 cut(s) 381, 993
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 4 cut(s) 609, 624, 738, 1125
BlpI GCTNAGC 1 cut(s) 1152
BlsI GCNGC 4 cut(s) 610, 625, 739, 1126
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 4 cut(s) 29, 98, 558, 634
Bme18I GGWCC 2 cut(s) 24, 1092
BmgT120I GGNCC 7 cut(s) 24, 45, 329, 689, 892, 1092, 1144
BmiI GGNNCC 3 cut(s) 25, 26, 651
BmrFI CCNGG 4 cut(s) 29, 98, 558, 634
BmsI GCATC 4 cut(s) 219, 271, 356, 901
BpmI CTGGAG 2 cut(s) 381, 1055
Bpu1102I GCTNAGC 1 cut(s) 1152
BsaJI CCNNGG 7 cut(s) 27, 28, 179, 431, 518, 903, 1119
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 337, 890, 1036, 1064, 1089
Bse1I ACTGG 3 cut(s) 651, 970, 1069
BseAI TCCGGA 1 cut(s) 528
BseBI CCWGG 4 cut(s) 29, 98, 558, 634
BseDI CCNNGG 7 cut(s) 27, 28, 179, 431, 518, 903, 1119
BseGI GGATG 4 cut(s) 234, 427, 871, 1166
BseLI CCNNNNNNNGG 6 cut(s) 158, 337, 890, 1036, 1064, 1089
BseMII CTCAG 3 cut(s) 237, 795, 1143
BseNI ACTGG 3 cut(s) 651, 970, 1069
BseRI GAGGAG 3 cut(s) 171, 459, 486
BseXI GCAGC 3 cut(s) 595, 749, 1111
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 1 cut(s) 619
BshFI GGCC 7 cut(s) 47, 96, 255, 330, 690, 894, 1145
BshNI GGYRCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 109, 589
BsiSI CCGG 2 cut(s) 72, 529
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 6 cut(s) 158, 337, 890, 1036, 1064, 1089
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 7 cut(s) 47, 96, 255, 330, 690, 894, 1145
Bsp1286I GDGCHC 2 cut(s) 109, 589
Bsp13I TCCGGA 1 cut(s) 528
Bsp1407I TGTACA 1 cut(s) 1001
Bsp143I GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
Bsp1720I GCTNAGC 1 cut(s) 1152
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 3 cut(s) 5, 624, 1156
BspANI GGCC 7 cut(s) 47, 96, 255, 330, 690, 894, 1145
BspCNI CTCAG 3 cut(s) 236, 796, 1144
BspEI TCCGGA 1 cut(s) 528
BspFNI CGCG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 3 cut(s) 25, 26, 651
BspPI GGATC 2 cut(s) 596, 726
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 649
BsrBI CCGCTC 1 cut(s) 1156
BsrGI TGTACA 1 cut(s) 1001
BsrI ACTGG 3 cut(s) 651, 970, 1069
BssECI CCNNGG 7 cut(s) 27, 28, 179, 431, 518, 903, 1119
BssMI GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
BssNAI GTATAC 1 cut(s) 1169
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 4 cut(s) 179, 431, 518, 903
Bst1107I GTATAC 1 cut(s) 1169
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 4 cut(s) 29, 98, 558, 634
Bst4CI ACNGT 4 cut(s) 704, 732, 1001, 1031
Bst6I CTCTTC 1 cut(s) 594
BstAUI TGTACA 1 cut(s) 1001
BstC8I GCNNGC 4 cut(s) 376, 621, 639, 958
BstDEI CTNAG 3 cut(s) 223, 804, 1152
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 4 cut(s) 234, 427, 871, 1166
BstFNI CGCG 1 cut(s) 619
BstH2I RGCGCY 2 cut(s) 381, 993
BstHHI GCGC 2 cut(s) 380, 992
BstKTI GATC 6 cut(s) 57, 124, 604, 721, 924, 1140
BstMBI GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
BstMWI GCNNNNNNNGC 9 cut(s) 181, 302, 605, 629, 638, 647, 876, 966, 1124
BstNI CCWGG 4 cut(s) 29, 98, 558, 634
BstNSI RCATGY 2 cut(s) 641, 946
BstSCI CCNGG 4 cut(s) 27, 96, 556, 632
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 595, 749, 1111
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
BstZ17I GTATAC 1 cut(s) 1169
BsuI GTATCC 1 cut(s) 352
BsuRI GGCC 7 cut(s) 47, 96, 255, 330, 690, 894, 1145
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 4 cut(s) 234, 427, 871, 1166
BtsI GCAGTG 2 cut(s) 924, 1113
BtsIMutI CAGTG 4 cut(s) 924, 997, 1062, 1113
Cac8I GCNNGC 4 cut(s) 376, 621, 639, 958
CciI TCATGA 1 cut(s) 475
CfoI GCGC 2 cut(s) 380, 992
Cfr13I GGNCC 7 cut(s) 24, 45, 329, 689, 892, 1092, 1144
Csp6I GTAC 3 cut(s) 14, 963, 1002
CviAII CATG 6 cut(s) 180, 476, 500, 638, 943, 1005
CviQI GTAC 3 cut(s) 14, 963, 1002
DdeI CTNAG 3 cut(s) 223, 804, 1152
DpnI GATC 6 cut(s) 56, 123, 603, 720, 923, 1139
DpnII GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 4 cut(s) 179, 431, 518, 903
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 24, 1092
Eco53kI GAGCTC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 587
EcoO109I RGGNCCY 3 cut(s) 24, 689, 1144
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 4 cut(s) 27, 96, 556, 632
EcoT14I CCWWGG 4 cut(s) 179, 431, 518, 903
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 4 cut(s) 179, 431, 518, 903
FaeI CATG 6 cut(s) 183, 479, 503, 641, 946, 1008
FaqI GGGAC 1 cut(s) 37
FatI CATG 6 cut(s) 179, 475, 499, 637, 942, 1004
FauI CCCGC 1 cut(s) 1149
FauNDI CATATG 2 cut(s) 709, 888
FbaI TGATCA 2 cut(s) 921, 1137
FblI GTMKAC 3 cut(s) 210, 855, 1168
Fnu4HI GCNGC 4 cut(s) 609, 624, 738, 1125
FokI GGATG 4 cut(s) 241, 414, 878, 1173
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 4 cut(s) 609, 624, 738, 1125
FspBI CTAG 4 cut(s) 147, 792, 899, 1128
GlaI GCGC 2 cut(s) 379, 991
GluI GCNGC 4 cut(s) 609, 624, 738, 1125
GsuI CTGGAG 2 cut(s) 381, 1055
HaeII RGCGCY 2 cut(s) 381, 993
HaeIII GGCC 7 cut(s) 47, 96, 255, 330, 690, 894, 1145
HapII CCGG 2 cut(s) 72, 529
HhaI GCGC 2 cut(s) 380, 992
Hin1II CATG 6 cut(s) 183, 479, 503, 641, 946, 1008
Hin6I GCGC 2 cut(s) 378, 990
HinP1I GCGC 2 cut(s) 378, 990
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 82, 493, 932
HpaII CCGG 2 cut(s) 72, 529
HphI GGTGA 3 cut(s) 472, 568, 1147
Hpy166II GTNNAC 6 cut(s) 211, 492, 551, 856, 1014, 1169
Hpy188I TCNGA 4 cut(s) 41, 59, 87, 121
Hpy8I GTNNAC 6 cut(s) 211, 492, 551, 856, 1014, 1169
HpyAV CCTTC 3 cut(s) 702, 802, 866
HpyCH4III ACNGT 4 cut(s) 704, 732, 1001, 1031
HpyCH4IV ACGT 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 9 cut(s) 181, 302, 605, 629, 638, 647, 876, 966, 1124
HpyF3I CTNAG 3 cut(s) 223, 804, 1152
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 6 cut(s) 183, 479, 503, 641, 946, 1008
HspAI GCGC 2 cut(s) 378, 990
KflI GGGWCCC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 528
Ksp22I TGATCA 2 cut(s) 921, 1137
Kzo9I GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 6 cut(s) 32, 74, 400, 472, 584, 762
Lsp1109I GCAGC 3 cut(s) 595, 749, 1111
LweI GCATC 4 cut(s) 219, 271, 356, 901
MaeI CTAG 4 cut(s) 147, 792, 899, 1128
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 142, 308, 435
MalI GATC 6 cut(s) 56, 123, 603, 720, 923, 1139
MbiI CCGCTC 1 cut(s) 1156
MboI GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
MboII GAAGA 2 cut(s) 581, 807
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 2 cut(s) 109, 589
MluCI AATT 4 cut(s) 162, 513, 780, 833
MluI ACGCGT 1 cut(s) 617
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 1070
MroI TCCGGA 1 cut(s) 528
MroXI GAANNNNTTC 1 cut(s) 703
MseI TTAA 2 cut(s) 165, 1107
MspI CCGG 2 cut(s) 72, 529
MspR9I CCNGG 4 cut(s) 29, 98, 558, 634
MvaI CCWGG 4 cut(s) 29, 98, 558, 634
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 9 cut(s) 181, 302, 605, 629, 638, 647, 876, 966, 1124
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 2 cut(s) 709, 888
NdeII GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
NlaIII CATG 6 cut(s) 183, 479, 503, 641, 946, 1008
NlaIV GGNNCC 3 cut(s) 25, 26, 651
NmeAIII GCCGAG 1 cut(s) 1144
NmuCI GTSAC 1 cut(s) 435
NspI RCATGY 2 cut(s) 641, 946
PaeI GCATGC 1 cut(s) 641
PagI TCATGA 1 cut(s) 475
PasI CCCWGGG 1 cut(s) 28
PceI AGGCCT 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 703
PfeI GAWTC 2 cut(s) 82, 932
PflFI GACNNNGTC 1 cut(s) 215
PflMI CCANNNNNTGG 2 cut(s) 1064, 1089
PkrI GCNGC 4 cut(s) 610, 625, 739, 1126
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 24
PsiI TTATAA 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 589
Psp1406I AACGTT 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 4 cut(s) 27, 96, 556, 632
PspGI CCWGG 4 cut(s) 27, 96, 556, 632
PspN4I GGNNCC 3 cut(s) 25, 26, 651
PspPI GGNCC 7 cut(s) 24, 45, 329, 689, 892, 1092, 1144
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 1 cut(s) 718
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 3 cut(s) 15, 964, 1003
RsaNI GTAC 3 cut(s) 14, 963, 1002
SacI GAGCTC 1 cut(s) 589
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 165, 1107
SatI GCNGC 4 cut(s) 609, 624, 738, 1125
Sau3AI GATC 6 cut(s) 54, 121, 601, 718, 921, 1137
Sau96I GGNCC 7 cut(s) 24, 45, 329, 689, 892, 1092, 1144
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 4 cut(s) 29, 98, 558, 634
SduI GDGCHC 2 cut(s) 109, 589
SfaNI GCATC 4 cut(s) 219, 271, 356, 901
SfcI CTRYAG 1 cut(s) 746
SinI GGWCC 2 cut(s) 24, 1092
SphI GCATGC 1 cut(s) 641
Sse9I AATT 4 cut(s) 162, 513, 780, 833
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 3 cut(s) 5, 624, 1156
SspMI CTAG 4 cut(s) 147, 792, 899, 1128
SstI GAGCTC 1 cut(s) 589
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 4 cut(s) 27, 96, 556, 632
StyI CCWWGG 4 cut(s) 179, 431, 518, 903
TaaI ACNGT 4 cut(s) 704, 732, 1001, 1031
TaiI ACGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 139, 1054
TasI AATT 4 cut(s) 162, 513, 780, 833
TatI WGTACW 2 cut(s) 962, 1001
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 2 cut(s) 82, 932
Tru1I TTAA 2 cut(s) 165, 1107
Tru9I TTAA 2 cut(s) 165, 1107
TscAI CASTG 4 cut(s) 931, 1004, 1069, 1120
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 3 cut(s) 608, 737, 1124
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 2 cut(s) 581, 696
TspRI CASTG 4 cut(s) 931, 1004, 1069, 1120
Tth111I GACNNNGTC 1 cut(s) 215
Van91I CCANNNNNTGG 2 cut(s) 1064, 1089
VpaK11BI GGWCC 2 cut(s) 24, 1092
XapI RAATTY 3 cut(s) 513, 780, 833
XbaI TCTAGA 1 cut(s) 791
XceI RCATGY 2 cut(s) 641, 946
XmiI GTMKAC 3 cut(s) 210, 855, 1168
XmnI GAANNNNTTC 1 cut(s) 703
XspI CTAG 4 cut(s) 147, 792, 899, 1128
ZrmI AGTACT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.