FvH4_6g19490

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003516
Physical Location & Seq
Forward (+)
13028814 .. 13032444
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19490.t5

Sequence Viewer

Length: 1116 bp
ATGGGTTTGCCGGAGCTGAGAATCAGAGCATTGGTTTGGTTCGTGCTCTGGGTCTATCTGATCGTCATTCTCTATATAGAGTTACTAGACCAAGAGGAGGAATTAACAGATGGCTTCCATGGCTTCCACTTTCTCTGCATAAAAAAGCAGACTATGTCATCTCAGGGATCAGAGGGAGGAACAAAGATAGGTCTCTCATCTGGTGTTGTGGAAGCTGATGCAAAGCAGATTGCAAATATGGCTCGTCAGACATTTGCCAAAGATGGCCCGTTGCTGGTAGTTGCATCTGGTCGCGATACCATTCCCGTTGCAAGCGCCATAAAACGATTAGCTCCAGAAAATGTTTTTCTTGTTCAGATACAACATCCAAGGTCGCATCTGAACAGGTTTGATTTGGTGATAGCTCCTCGTCATGATTATTATCCATTGACTCCTCATGCGCAGAAACAAATTCCTTGGTTTCTCCGGAGGTGGATTACCCCTCGTGAACCACCTGGAAAAAATGTGGTTCTCACTATTGGAGCTCTTCATCAGGCTGATTCCGCTGCACTTAGGAGTGCTGCTTCTTCCTGGCATGCTGAATTGGCACCGCTACCAAAGCCCTTGCTCGTAGTCAATATAGGAGGCCCTTCAGGGAGCTGTTCATATGGCGTGGATCTTGCAAAACAGTTAGCAGCTATGCTACAGAATGTCCTGTGGAGCTGTGGAAGTGTGAGAATTTCTTTCTCTAGAAGAACTCCTGAGAAGGTGTCCAAACTTCTTATAAGAGAATTCAGTAATAATCCGAAAGTCTACATTTGGGATGGTGAAGGCCGCAATCCACATTTGGCCCATCTAGCCTTGGCAGATGCTTTTGTCATCACTGCTGATTCAGTCAGCATGTTGAGTGAGGCTTGCAGTACCAGCAAACCTGTGTATGTGATTGGTGCCGAACGCTGTACGTGGAAGTTCGCAGACTTCCAGAACCGTCTGGAGGAAAGGGGAGTGGTTCGACCATTCACTGGTAAAGAGGATATGTCTATGTGTTGGAGCTATGTTCCACTTAATGACACTGCCGAAGCTGCTAGTCAGGTGAACAAGGTCCTTGCCGAGCGGGGATGGAGTATACTTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

372

Amino Acids

41.15

Weight (kDa)

8.67

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 62 - 338 5.2e-98 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
Acc16I TGCGCA 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 586, 926
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccBSI CCGCTC 1 cut(s) 1093
AccI GTMKAC 2 cut(s) 792, 1105
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 465
AciI CCGC 4 cut(s) 543, 590, 814, 1093
AclWI GGATC 2 cut(s) 175, 663
AcsI RAATTY 3 cut(s) 450, 717, 770
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 901, 940
AfiI CCNNNNNNNGG 4 cut(s) 97, 274, 973, 1001
AjnI CCWGG 2 cut(s) 493, 569
Alw21I GWGCWC 2 cut(s) 48, 526
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 175, 663
Aor13HI TCCGGA 1 cut(s) 465
AoxI GGCC 4 cut(s) 265, 625, 811, 828
ApeKI GCWGC 4 cut(s) 545, 560, 674, 1061
ApoI RAATTY 3 cut(s) 450, 717, 770
AspLEI GCGC 2 cut(s) 317, 442
AspS9I GGNCC 4 cut(s) 266, 626, 829, 1081
AsuHPI GGTGA 3 cut(s) 409, 818, 1084
AvaII GGWCC 1 cut(s) 1081
BanI GGYRCC 2 cut(s) 586, 926
BanII GRGCYC 1 cut(s) 526
BauI CACGAG 1 cut(s) 483
Bbv12I GWGCWC 2 cut(s) 48, 526
BbvI GCAGC 4 cut(s) 532, 547, 686, 1048
BccI CCATC 5 cut(s) 104, 257, 797, 840, 1092
BciT130I CCWGG 2 cut(s) 495, 571
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 4 cut(s) 86, 729, 836, 1065
BfmI CTRYAG 1 cut(s) 683
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 5 cut(s) 546, 561, 675, 814, 1062
BlsI GCNGC 5 cut(s) 547, 562, 676, 815, 1063
Bme1390I CCNGG 2 cut(s) 495, 571
Bme18I GGWCC 1 cut(s) 1081
BmgT120I GGNCC 4 cut(s) 266, 626, 829, 1081
BmiI GGNNCC 2 cut(s) 588, 928
BmrFI CCNGG 2 cut(s) 495, 571
BmsI GCATC 4 cut(s) 208, 293, 385, 838
BpmI CTGGAG 2 cut(s) 318, 992
BsaAI YACGTR 1 cut(s) 942
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 118, 368, 455, 840
BsaWI WCCGGW 1 cut(s) 465
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 274, 973, 1001
Bse1I ACTGG 1 cut(s) 1006
Bse8I GATNNNNATC 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 465
BseBI CCWGG 2 cut(s) 495, 571
BseDI CCNNGG 4 cut(s) 118, 368, 455, 840
BseGI GGATG 3 cut(s) 364, 808, 1103
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 97, 274, 973, 1001
BseMII CTCAG 3 cut(s) 8, 176, 732
BseNI ACTGG 1 cut(s) 1006
BseRI GAGGAG 3 cut(s) 110, 396, 423
BseXI GCAGC 4 cut(s) 532, 547, 686, 1048
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 267, 627, 813, 830
BshNI GGYRCC 2 cut(s) 586, 926
BsiHKAI GWGCWC 2 cut(s) 48, 526
BsiSI CCGG 2 cut(s) 11, 466
BslI CCNNNNNNNGG 4 cut(s) 97, 274, 973, 1001
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 4 cut(s) 267, 627, 813, 830
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 48, 526
Bsp13I TCCGGA 1 cut(s) 465
Bsp143I GATC 3 cut(s) 60, 167, 655
Bsp19I CCATGG 1 cut(s) 118
Bsp68I TCGCGA 1 cut(s) 294
BspACI CCGC 4 cut(s) 543, 590, 814, 1093
BspANI GGCC 4 cut(s) 267, 627, 813, 830
BspCNI CTCAG 3 cut(s) 9, 175, 733
BspEI TCCGGA 1 cut(s) 465
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 588, 928
BspPI GGATC 2 cut(s) 175, 663
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 2 cut(s) 586, 926
BspTNI GGTCTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 1093
BsrI ACTGG 1 cut(s) 1006
BssECI CCNNGG 4 cut(s) 118, 368, 455, 840
BssMI GATC 3 cut(s) 60, 167, 655
BssNAI GTATAC 1 cut(s) 1106
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 4 cut(s) 118, 368, 455, 840
Bst1107I GTATAC 1 cut(s) 1106
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 495, 571
Bst4CI ACNGT 2 cut(s) 669, 968
Bst6I CTCTTC 1 cut(s) 531
BstBAI YACGTR 1 cut(s) 942
BstC8I GCNNGC 3 cut(s) 313, 576, 895
BstDEI CTNAG 4 cut(s) 17, 162, 551, 741
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 364, 808, 1103
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 2 cut(s) 317, 442
BstKTI GATC 3 cut(s) 63, 170, 658
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 60, 167, 655
BstMWI GCNNNNNNNGC 8 cut(s) 120, 239, 542, 584, 598, 836, 903, 1061
BstNI CCWGG 2 cut(s) 495, 571
BstNSI RCATGY 2 cut(s) 578, 883
BstSCI CCNGG 2 cut(s) 493, 569
BstSFI CTRYAG 1 cut(s) 683
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 4 cut(s) 532, 547, 686, 1048
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BstZ17I GTATAC 1 cut(s) 1106
BsuRI GGCC 4 cut(s) 267, 627, 813, 830
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 364, 808, 1103
BtsI GCAGTG 2 cut(s) 861, 1050
BtsIMutI CAGTG 3 cut(s) 861, 999, 1050
BtuMI TCGCGA 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 313, 576, 895
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 317, 442
Cfr13I GGNCC 4 cut(s) 266, 626, 829, 1081
Csp6I GTAC 2 cut(s) 900, 939
CviAII CATG 5 cut(s) 119, 413, 437, 575, 880
CviQI GTAC 2 cut(s) 900, 939
DdeI CTNAG 4 cut(s) 17, 162, 551, 741
DpnI GATC 3 cut(s) 62, 169, 657
DpnII GATC 3 cut(s) 60, 167, 655
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 4 cut(s) 118, 368, 455, 840
Eco24I GRGCYC 1 cut(s) 526
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 1081
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 524
EcoO109I RGGNCCY 2 cut(s) 626, 1081
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 493, 569
EcoT14I CCWWGG 4 cut(s) 118, 368, 455, 840
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 4 cut(s) 118, 368, 455, 840
FaeI CATG 5 cut(s) 122, 416, 440, 578, 883
FatI CATG 5 cut(s) 118, 412, 436, 574, 879
FauI CCCGC 1 cut(s) 1086
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 2 cut(s) 792, 1105
Fnu4HI GCNGC 5 cut(s) 546, 561, 675, 814, 1062
FokI GGATG 3 cut(s) 351, 815, 1110
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 5 cut(s) 546, 561, 675, 814, 1062
FspBI CTAG 4 cut(s) 86, 729, 836, 1065
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 2 cut(s) 316, 441
GluI GCNGC 5 cut(s) 546, 561, 675, 814, 1062
GsuI CTGGAG 2 cut(s) 318, 992
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 4 cut(s) 267, 627, 813, 830
HapII CCGG 2 cut(s) 11, 466
HhaI GCGC 2 cut(s) 317, 442
Hin1II CATG 5 cut(s) 122, 416, 440, 578, 883
Hin6I GCGC 2 cut(s) 315, 440
HinP1I GCGC 2 cut(s) 315, 440
HinfI GANTC 4 cut(s) 21, 430, 539, 869
HpaII CCGG 2 cut(s) 11, 466
HphI GGTGA 3 cut(s) 409, 818, 1084
Hpy166II GTNNAC 4 cut(s) 488, 793, 1075, 1106
Hpy188I TCNGA 7 cut(s) 26, 60, 172, 249, 357, 381, 786
Hpy188III TCNNGA 9 cut(s) 293, 335, 413, 466, 485, 729, 740, 961, 971
Hpy8I GTNNAC 4 cut(s) 488, 793, 1075, 1106
HpyAV CCTTC 3 cut(s) 639, 739, 803
HpyCH4III ACNGT 2 cut(s) 669, 968
HpyCH4IV ACGT 1 cut(s) 941
HpyCH4V TGCA 8 cut(s) 138, 221, 233, 284, 311, 548, 662, 897
HpyF10VI GCNNNNNNNGC 8 cut(s) 120, 239, 542, 584, 598, 836, 903, 1061
HpyF3I CTNAG 4 cut(s) 17, 162, 551, 741
HpySE526I ACGT 1 cut(s) 941
Hsp92II CATG 5 cut(s) 122, 416, 440, 578, 883
HspAI GCGC 2 cut(s) 315, 440
Kpn2I TCCGGA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 60, 167, 655
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 7 cut(s) 13, 337, 409, 521, 636, 699, 1029
Lsp1109I GCAGC 4 cut(s) 532, 547, 686, 1048
LweI GCATC 4 cut(s) 208, 293, 385, 838
MaeI CTAG 4 cut(s) 86, 729, 836, 1065
MaeII ACGT 1 cut(s) 941
MaeIII GTNAC 1 cut(s) 81
MalI GATC 3 cut(s) 62, 169, 657
MbiI CCGCTC 1 cut(s) 1093
MboI GATC 3 cut(s) 60, 167, 655
MboII GAAGA 3 cut(s) 518, 558, 744
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 48, 526
MluCI AATT 5 cut(s) 101, 450, 581, 717, 770
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 1007
MroI TCCGGA 1 cut(s) 465
MseI TTAA 2 cut(s) 104, 1044
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 11, 466
MspR9I CCNGG 2 cut(s) 495, 571
MvaI CCWGG 2 cut(s) 495, 571
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 8 cut(s) 120, 239, 542, 584, 598, 836, 903, 1061
NcoI CCATGG 1 cut(s) 118
NdeI CATATG 1 cut(s) 646
NdeII GATC 3 cut(s) 60, 167, 655
NlaIII CATG 5 cut(s) 122, 416, 440, 578, 883
NlaIV GGNNCC 2 cut(s) 588, 928
NmeAIII GCCGAG 1 cut(s) 1114
NruI TCGCGA 1 cut(s) 294
NsbI TGCGCA 1 cut(s) 441
NspI RCATGY 2 cut(s) 578, 883
PaeI GCATGC 1 cut(s) 578
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 21, 539, 869
PflFI GACNNNGTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 1001
PkrI GCNGC 5 cut(s) 547, 562, 676, 815, 1063
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 942
PpuMI RGGWCCY 1 cut(s) 1081
PsiI TTATAA 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 1081
Psp6I CCWGG 2 cut(s) 493, 569
PspGI CCWGG 2 cut(s) 493, 569
PspN4I GGNNCC 2 cut(s) 588, 928
PspPI GGNCC 4 cut(s) 266, 626, 829, 1081
PspPPI RGGWCCY 1 cut(s) 1081
PsuI RGATCY 1 cut(s) 655
PsyI GACNNNGTC 1 cut(s) 154
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 2 cut(s) 901, 940
RsaNI GTAC 2 cut(s) 900, 939
SacI GAGCTC 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 2 cut(s) 104, 1044
SatI GCNGC 5 cut(s) 546, 561, 675, 814, 1062
Sau3AI GATC 3 cut(s) 60, 167, 655
Sau96I GGNCC 4 cut(s) 266, 626, 829, 1081
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 495, 571
SduI GDGCHC 2 cut(s) 48, 526
SfaNI GCATC 4 cut(s) 208, 293, 385, 838
SfcI CTRYAG 1 cut(s) 683
SinI GGWCC 1 cut(s) 1081
SphI GCATGC 1 cut(s) 578
Sse9I AATT 5 cut(s) 101, 450, 581, 717, 770
SsiI CCGC 4 cut(s) 543, 590, 814, 1093
SspMI CTAG 4 cut(s) 86, 729, 836, 1065
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 493, 569
StyI CCWWGG 4 cut(s) 118, 368, 455, 840
TaaI ACNGT 2 cut(s) 669, 968
TaiI ACGT 1 cut(s) 944
TaqI TCGA 1 cut(s) 991
TasI AATT 5 cut(s) 101, 450, 581, 717, 770
TauI GCSGC 1 cut(s) 816
TfiI GAWTC 3 cut(s) 21, 539, 869
Tru1I TTAA 2 cut(s) 104, 1044
Tru9I TTAA 2 cut(s) 104, 1044
TscAI CASTG 3 cut(s) 868, 1006, 1057
TseI GCWGC 4 cut(s) 545, 560, 674, 1061
TspDTI ATGAA 2 cut(s) 518, 633
TspRI CASTG 3 cut(s) 868, 1006, 1057
Tth111I GACNNNGTC 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 1081
XapI RAATTY 3 cut(s) 450, 717, 770
XbaI TCTAGA 1 cut(s) 728
XceI RCATGY 2 cut(s) 578, 883
XmiI GTMKAC 2 cut(s) 792, 1105
XspI CTAG 4 cut(s) 86, 729, 836, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.