Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003516

Physical Location & Seq

Genomic Coordinates Forward (+)

11854168 .. 11858463

Gene Structure 4296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTTCTTCTCATTGGTGACAGGAAGGCCTGGTGCAAGTGGGTTTGGATCAGCTTCAACTGCTGAGCAAGTCACTGAAGGGATTGATGCAAAAAACCTCACTGCCATTGTCACTGGCGGGGCGAGTGGGATTGGATTGGAGACAGCAAAGATCTTGGCGCTCCGAAGAGCCCATGTCATCATTGCTGCTAGAAACATTGAGGCTGCAAACAAAGCGAAACAGATCATTCTCGAAGAGAATGAGAAAGCTCGAGTGGATGTTCTAATACTTGACCTCTGCTCAGTCAAGTCTGTTAGAGCATTTGTTGACAGCTTCATTGCTCTCGATCTTCCTCTCAACCTCCTAATAAACAATGCTGGTGTTATGTTCTGCCCTCACCGGCTTTCAGAAGATGGAATAGAGATGCAGTTTGCAACCAATCATCTTGGTCATTTTCTCTTGACCAACCTCCTCCTTGAGAAAATGAAGCACACGGCTAAAACCACTGGCATCGAAGGCAGAATTGTGAACCTGTCATCAATTGCTCATGTGCACACCTATGGCAATGGGATTCGATTTGATAGGATCAATGAACGAAGTGGTTACTCAGACAAAAGAGCATATGGCCAATCCAAACTAGCCAACATACTCCATGCTAATGAGCTCTCTCGTAGGTTGCAGGTAGAGGGTGTGAACATCACAGTCAACTCAGTCCACCCAGGAATAATAATGACACCTCTCATGAGGCACTCTGCTTTTTTAATGAAAACTTTGAGGTTTCTCACCTTTTGCATTTGGAAGAATGTTCCTCAGGGAGCAGCCACAACATGCTTTGTAGCACTGCATCCAAAACTGAAAGGTGTAACCGGAAAATATTATGTGGACTGCAACGAGATGAAGCCGAGCTCGTATGCTAGAAATGAAAAGTTGGCGAAAAGACTGTGGGACTTCAGCAACAAGTTGATTGATGGAGCTTCTTCTAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

323

Amino Acids

35.38

Weight (kDa)

9.55

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 180	5.3e-23	short chain dehydrogenase
KR	PF08659	35 - 123	4.6e-06	KR domain
adh_short_C2	PF13561	42 - 285	7.6e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06180 AT5G06180 AT5G06180 AT5G06180
fragaria_vesca	FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490 FvH4_6g19490
malus_domestica	MD14G1031500.v1.1
prunus_persica	Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1 Prupe.7G101400_v2.0.a1
pyrus_communis	pycom14g02840
rosa_chinensis	RchiOBHm_Chr3g0474821
rosa_laevigata	RLG00000023892
rosa_multiflora	Rmu_sc0039988.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406820
rosa_rugosa	Rorug03G0144200 Rorug03G0144300 Rorug03G0144400
rosa_samantha	Rh3AG193900 Rh3BG223800 Rh3CG218700 Rh3DG219700
rosa_wichuraiana	Rw3G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	58, 575
AcoI	YGGCCR	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	99, 916
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	31, 700
AluBI	AGCT	6 cut(s)	56, 251, 315, 646, 888, 956
AluI	AGCT	6 cut(s)	56, 251, 315, 646, 888, 956
Alw21I	GWGCWC	3 cut(s)	537, 648, 890
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	58, 575
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	29, 607
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	188, 206, 800
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	31, 371, 757
AvaI	CYCGRG	1 cut(s)	252
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	609
BanII	GRGCYC	3 cut(s)	175, 648, 890
Bbv12I	GWGCWC	3 cut(s)	537, 648, 890
BbvI	GCAGC	3 cut(s)	175, 193, 812
BccI	CCATC	2 cut(s)	389, 944
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	2 cut(s)	33, 702
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	3 cut(s)	192, 620, 897
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	189, 207, 801
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	190, 208, 802
Bme1390I	CCNGG	2 cut(s)	33, 702
BmeT110I	CYCGRG	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	33, 702
BmsI	GCATC	4 cut(s)	79, 396, 501, 835
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	700
BsaWI	WCCGGW	1 cut(s)	848
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	121, 493
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	3 cut(s)	183, 318, 553
BseBI	CCWGG	2 cut(s)	33, 702
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	2 cut(s)	265, 826
BseMI	GCAATG	3 cut(s)	183, 318, 553
BseMII	CTCAG	5 cut(s)	57, 297, 603, 705, 806
BseNI	ACTGG	2 cut(s)	121, 493
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	175, 193, 812
BshFI	GGCC	2 cut(s)	31, 609
BsiHKAI	GWGCWC	3 cut(s)	537, 648, 890
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	382, 849
BslFI	GGGAC	1 cut(s)	941
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	941
BsnI	GGCC	2 cut(s)	31, 609
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	4 cut(s)	175, 537, 648, 890
Bsp143I	GATC	5 cut(s)	50, 153, 225, 328, 567
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	31, 609
BspCNI	CTCAG	5 cut(s)	58, 296, 602, 704, 805
BspHI	TCATGA	1 cut(s)	723
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	58, 575
BspQI	GCTCTTC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	183, 318, 553
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	121, 493
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	5 cut(s)	50, 153, 225, 328, 567
Bst2UI	CCWGG	2 cut(s)	33, 702
Bst4CI	ACNGT	2 cut(s)	685, 924
Bst6I	CTCTTC	2 cut(s)	163, 231
BstDEI	CTNAG	5 cut(s)	66, 283, 589, 691, 792
BstF5I	GGATG	2 cut(s)	265, 826
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	5 cut(s)	53, 156, 228, 331, 570
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	50, 153, 225, 328, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
BstNI	CCWGG	2 cut(s)	33, 702
BstNSI	RCATGY	1 cut(s)	813
BstSCI	CCNGG	2 cut(s)	31, 700
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	175, 193, 812
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	31, 609
BtsCI	GGATG	2 cut(s)	265, 826
BtsI	GCAGTG	2 cut(s)	102, 821
BtsIMutI	CAGTG	5 cut(s)	75, 102, 114, 486, 821
BveI	ACCTGC	1 cut(s)	652
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	381
CviAII	CATG	5 cut(s)	176, 530, 635, 724, 810
DdeI	CTNAG	5 cut(s)	66, 283, 589, 691, 792
DpnI	GATC	5 cut(s)	52, 155, 227, 330, 569
DpnII	GATC	5 cut(s)	50, 153, 225, 328, 567
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	163, 231
EarI	CTCTTC	2 cut(s)	163, 231
Ecl136II	GAGCTC	2 cut(s)	646, 888
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	3 cut(s)	175, 648, 890
Eco53kI	GAGCTC	2 cut(s)	646, 888
Eco57I	CTGAAG	2 cut(s)	99, 916
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	646, 888
EcoRII	CCWGG	2 cut(s)	31, 700
EcoT38I	GRGCYC	3 cut(s)	175, 648, 890
FaeI	CATG	5 cut(s)	179, 533, 638, 727, 813
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	5 cut(s)	175, 529, 634, 723, 809
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	189, 207, 801
FokI	GGATG	2 cut(s)	272, 813
FriOI	GRGCYC	3 cut(s)	175, 648, 890
Fsp4HI	GCNGC	3 cut(s)	189, 207, 801
FspBI	CTAG	3 cut(s)	192, 620, 897
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	189, 207, 801
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	31, 609
HapII	CCGG	2 cut(s)	382, 849
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	179, 533, 638, 727, 813
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	310, 688
HindII	GTYRAC	2 cut(s)	310, 688
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	2 cut(s)	382, 849
HphI	GGTGA	3 cut(s)	31, 371, 757
Hpy166II	GTNNAC	7 cut(s)	310, 511, 535, 676, 688, 697, 865
Hpy188I	TCNGA	3 cut(s)	167, 391, 592
Hpy188III	TCNNGA	4 cut(s)	233, 326, 442, 724
Hpy8I	GTNNAC	7 cut(s)	310, 511, 535, 676, 688, 697, 865
HpyAV	CCTTC	3 cut(s)	21, 74, 491
HpyCH4III	ACNGT	2 cut(s)	685, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
HpyF3I	CTNAG	5 cut(s)	66, 283, 589, 691, 792
Hsp92II	CATG	5 cut(s)	179, 533, 638, 727, 813
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	50, 153, 225, 328, 567
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	168, 797, 953
Lsp1109I	GCAGC	3 cut(s)	175, 193, 812
LweI	GCATC	4 cut(s)	79, 396, 501, 835
MaeI	CTAG	3 cut(s)	192, 620, 897
MaeIII	GTNAC	5 cut(s)	19, 73, 112, 584, 844
MalI	GATC	5 cut(s)	52, 155, 227, 330, 569
MboI	GATC	5 cut(s)	50, 153, 225, 328, 567
MboII	GAAGA	6 cut(s)	180, 248, 323, 404, 793, 951
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	4 cut(s)	175, 537, 648, 890
MlsI	TGGCCA	1 cut(s)	609
MluCI	AATT	2 cut(s)	504, 522
MluNI	TGGCCA	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	609
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	1 cut(s)	743
MslI	CAYNNNNRTG	2 cut(s)	540, 639
Msp20I	TGGCCA	1 cut(s)	609
MspI	CCGG	2 cut(s)	382, 849
MspR9I	CCNGG	2 cut(s)	33, 702
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	33, 702
MwoI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	50, 153, 225, 328, 567
NlaIII	CATG	5 cut(s)	179, 533, 638, 727, 813
NmeAIII	GCCGAG	1 cut(s)	909
NmuCI	GTSAC	3 cut(s)	19, 73, 112
NspI	RCATGY	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	723
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	3 cut(s)	190, 208, 802
Psp124BI	GAGCTC	2 cut(s)	648, 890
Psp6I	CCWGG	2 cut(s)	31, 700
PspGI	CCWGG	2 cut(s)	31, 700
PspXI	VCTCGAGB	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	540, 639
SacI	GAGCTC	2 cut(s)	648, 890
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	3 cut(s)	189, 207, 801
Sau3AI	GATC	5 cut(s)	50, 153, 225, 328, 567
ScrFI	CCNGG	2 cut(s)	33, 702
SduI	GDGCHC	4 cut(s)	175, 537, 648, 890
SfaNI	GCATC	4 cut(s)	79, 396, 501, 835
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	540, 639
SmlI	CTYRAG	2 cut(s)	252, 458
SmoI	CTYRAG	2 cut(s)	252, 458
Sse9I	AATT	2 cut(s)	504, 522
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	1 cut(s)	857
SspMI	CTAG	3 cut(s)	192, 620, 897
SstI	GAGCTC	2 cut(s)	648, 890
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	31, 700
TaaI	ACNGT	2 cut(s)	685, 924
TaqI	TCGA	5 cut(s)	234, 253, 327, 495, 556
TasI	AATT	2 cut(s)	504, 522
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	5 cut(s)	82, 109, 121, 493, 828
TseFI	GTSAC	3 cut(s)	19, 73, 112
TseI	GCWGC	3 cut(s)	188, 206, 800
Tsp45I	GTSAC	3 cut(s)	19, 73, 112
TspDTI	ATGAA	6 cut(s)	307, 482, 588, 761, 893, 918
TspRI	CASTG	5 cut(s)	82, 109, 121, 493, 828
VneI	GTGCAC	1 cut(s)	533
XceI	RCATGY	1 cut(s)	813
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	3 cut(s)	192, 620, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.