Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006586

Physical Location & Seq

Genomic Coordinates Forward (+)

2033760 .. 2036266

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCGCGATTGGCTTTAAATCGTTATAGCCGTTGTTTTTCGCGGCTTAAGACATTGACGACGCCTCTGTTTTTCTCTTCCTCTGCTGCGTCGAATCGAGATGGTGACTATCAGATAGGACCGCCCCCGATCCGAGTCGGACTCACTGAGTCAGCGGGTCGGGCTGTTTTTGCAACGCGTAAAATTGGTGCCGGAGATCTTATACACACGGCAAAGCCCGTCGTAGCTTGCCCTTCTCTTTTAAAGCTCGACTCTGTTTGCTATCTTTGCCTAAAGAAACTCATGGGTTCTGCTAAATTTGAAGATCGTGGAGTTTCTTATTGCAGTCAAGAGTGTCAAGAGAATTCAAAGGGGTTTTTGGATGTCGAAACAAGAGCAGATTGGTCAAGTTTTGATGATTATTGTAGGACGCATAACTTCAAGTACCCGCTTATGGTCAAGAGGTTGTGTTGTATGATAATATCAGGTGCCCGGCCCGCTGACTGTCTTGACATACTTCAACCAGCTGTTTTATCTTCTGAGATGATTTCAAAGATAGAAGACGGGTATGGTTTATTATGGAATGCCTTCAGGAAGGCAAATTTCAAGGATGACGATGTTGCTTTTCTGACAAAACAATGGTATACGGCTATACTCGCTCGGATTCGTATCAATGCATTTCGTATTGACCTGGTTGGAGGCTCATGTGGCGAAGACCTTCTTTCACTAGCTGCAGCCTCTGTTGAAGGTGAAGGTGCAGTTGGTCATGCCGTTTATATGCTACCATCCTTCTACAATCATGACTGTGATCCCAACGCGCACATAATTTGGTTGCATAATGCAGATGCAAGGTTGAACACTCTACGCGATGTCGAAGAAGGTGAAGAGCTTCGGATATGTTATATAGATGCAAGCATGGGATATGAAGCGCGACAAACAATACTCTCTCAAGGGTTTGGGTTCCTCTGCAACTGTTTACGCTGCCAGTCCACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

325

Amino Acids

36.13

Weight (kDa)

6.32

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06620 AT5G06620
fragaria_vesca	FvH4_6g21530 FvH4_6g21530 FvH4_6g21530 FvH4_6g21530 FvH4_6g21530
malus_domestica	MD12G1052100.v1.1
prunus_persica	Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1
pyrus_communis	pycom12g04590
rosa_chinensis	RchiOBHm_Chr3g0478741 RchiOBHm_Chr3g0478761
rosa_laevigata	RLG00000023628
rosa_multiflora	Rmu_sc0001519.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403110
rosa_rugosa	Rorug03G0167600 Rorug03G0167700 Rorug03G0167800
rosa_samantha	Rh3AG219700 Rh3BG251500 Rh3CG248500 Rh3DG244700
rosa_wichuraiana	Rw3G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 467
AccI	GTMKAC	1 cut(s)	623
AccII	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
AciI	CCGC	5 cut(s)	43, 122, 155, 428, 477
AclWI	GGATC	2 cut(s)	124, 782
AcsI	RAATTY	3 cut(s)	296, 343, 580
AcuI	CTGAAG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	8 cut(s)	302, 348, 421, 500, 531, 586, 725, 835
AjnI	CCWGG	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	2 cut(s)	723, 755
AluBI	AGCT	5 cut(s)	227, 247, 506, 710, 868
AluI	AGCT	5 cut(s)	227, 247, 506, 710, 868
AlwI	GGATC	2 cut(s)	124, 782
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	86, 710, 713, 960
ApoI	RAATTY	3 cut(s)	296, 343, 580
Asp700I	GAANNNNTTC	3 cut(s)	566, 696, 867
AspLEI	GCGC	2 cut(s)	799, 910
AspS9I	GGNCC	2 cut(s)	119, 474
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	116, 740, 872
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	2 cut(s)	188, 467
BbsI	GAAGAC	2 cut(s)	546, 699
BbvI	GCAGC	4 cut(s)	73, 697, 725, 947
BccI	CCATC	2 cut(s)	95, 772
BceAI	ACGGC	4 cut(s)	15, 225, 642, 734
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	472
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	5 cut(s)	44, 87, 711, 714, 961
BlsI	GCNGC	5 cut(s)	45, 88, 712, 715, 962
Bme1390I	CCNGG	2 cut(s)	472, 671
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 474
BmiI	GGNNCC	3 cut(s)	190, 469, 941
BmrFI	CCNGG	2 cut(s)	472, 671
BmsI	GCATC	2 cut(s)	814, 877
BpiI	GAAGAC	2 cut(s)	546, 699
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpuEI	CTTGAG	1 cut(s)	912
BpuMI	CCSGG	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	964
Bse8I	GATNNNNATC	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	671
BseGI	GGATG	3 cut(s)	367, 595, 764
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	138, 510
BseNI	ACTGG	1 cut(s)	964
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	73, 697, 725, 947
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
BshFI	GGCC	1 cut(s)	475
BshNI	GGYRCC	2 cut(s)	188, 467
BsiSI	CCGG	2 cut(s)	192, 472
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	129, 196, 304, 787
Bsp68I	TCGCGA	1 cut(s)	7
BspACI	CCGC	5 cut(s)	43, 122, 155, 428, 477
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	139, 511
BspFNI	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	3 cut(s)	190, 469, 941
BspMAI	CTGCAG	1 cut(s)	715
BspPI	GGATC	2 cut(s)	124, 782
BspQI	GCTCTTC	1 cut(s)	858
BspT107I	GGYRCC	2 cut(s)	188, 467
BspTI	CTTAAG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	964
BssMI	GATC	4 cut(s)	129, 196, 304, 787
BssNAI	GTATAC	1 cut(s)	624
BssNI	GRCGYC	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	3 cut(s)	485, 785, 953
Bst6I	CTCTTC	2 cut(s)	82, 858
BstACI	GRCGYC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	229, 477, 892
BstDEI	CTNAG	2 cut(s)	147, 519
BstF5I	GGATG	3 cut(s)	367, 595, 764
BstFNI	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
BstHHI	GCGC	2 cut(s)	799, 910
BstKTI	GATC	4 cut(s)	132, 199, 307, 790
BstMBI	GATC	4 cut(s)	129, 196, 304, 787
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 170, 267, 476, 635, 687
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	470, 669
BstSFI	CTRYAG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
BstV1I	GCAGC	4 cut(s)	73, 697, 725, 947
BstV2I	GAAGAC	2 cut(s)	546, 699
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	475
BtgZI	GCGATG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	367, 595, 764
BtsIMutI	CAGTG	2 cut(s)	144, 969
BtuMI	TCGCGA	1 cut(s)	7
Cac8I	GCNNGC	3 cut(s)	229, 477, 892
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	2 cut(s)	799, 910
Cfr13I	GGNCC	2 cut(s)	119, 474
CseI	GACGC	3 cut(s)	70, 78, 418
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	5 cut(s)	283, 684, 746, 779, 895
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	147, 519
DpnI	GATC	4 cut(s)	131, 198, 306, 789
DpnII	GATC	4 cut(s)	129, 196, 304, 787
DraI	TTTAAA	2 cut(s)	18, 243
Eam1104I	CTCTTC	2 cut(s)	82, 858
EarI	CTCTTC	2 cut(s)	82, 858
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	669
EcoT22I	ATGCAT	1 cut(s)	658
FaeI	CATG	5 cut(s)	286, 687, 749, 782, 898
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	5 cut(s)	282, 683, 745, 778, 894
FauI	CCCGC	3 cut(s)	148, 435, 484
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	5 cut(s)	44, 87, 711, 714, 961
FokI	GGATG	3 cut(s)	374, 602, 751
Fsp4HI	GCNGC	5 cut(s)	44, 87, 711, 714, 961
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	2 cut(s)	798, 909
GluI	GCNGC	5 cut(s)	44, 87, 711, 714, 961
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	2 cut(s)	192, 472
HgaI	GACGC	3 cut(s)	70, 78, 418
HhaI	GCGC	2 cut(s)	799, 910
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	286, 687, 749, 782, 898
Hin6I	GCGC	2 cut(s)	797, 908
HinP1I	GCGC	2 cut(s)	797, 908
HinfI	GANTC	6 cut(s)	94, 135, 141, 149, 251, 643
HpaII	CCGG	2 cut(s)	192, 472
HphI	GGTGA	3 cut(s)	116, 740, 872
Hpy166II	GTNNAC	3 cut(s)	624, 956, 969
Hpy188I	TCNGA	7 cut(s)	114, 134, 140, 520, 609, 642, 873
Hpy188III	TCNNGA	8 cut(s)	6, 98, 329, 338, 439, 488, 571, 779
Hpy8I	GTNNAC	3 cut(s)	624, 956, 969
Hpy99I	CGWCG	3 cut(s)	64, 94, 224
HpyAV	CCTTC	8 cut(s)	243, 568, 577, 707, 719, 725, 778, 851
HpyCH4III	ACNGT	3 cut(s)	485, 785, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 170, 267, 476, 635, 687
HpyF3I	CTNAG	2 cut(s)	147, 519
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	286, 687, 749, 782, 898
HspAI	GCGC	2 cut(s)	797, 908
Kzo9I	GATC	4 cut(s)	129, 196, 304, 787
LguI	GCTCTTC	1 cut(s)	858
LpnPI	CCDG	7 cut(s)	205, 450, 485, 516, 556, 656, 683
Lsp1109I	GCAGC	4 cut(s)	73, 697, 725, 947
LweI	GCATC	2 cut(s)	814, 877
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	4 cut(s)	131, 198, 306, 789
MboI	GATC	4 cut(s)	129, 196, 304, 787
MboII	GAAGA	7 cut(s)	69, 314, 507, 551, 704, 866, 875
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	5 cut(s)	183, 296, 343, 580, 804
MluI	ACGCGT	1 cut(s)	176
MlyI	GAGTC	4 cut(s)	135, 144, 158, 245
MmeI	TCCRAC	2 cut(s)	118, 655
MnlI	CCTC	6 cut(s)	75, 91, 435, 671, 727, 953
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	3 cut(s)	566, 696, 867
MseI	TTAA	3 cut(s)	17, 48, 242
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	3 cut(s)	155, 479, 506
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	2 cut(s)	192, 472
MspR9I	CCNGG	2 cut(s)	472, 671
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	6 cut(s)	7, 43, 178, 797, 846, 910
MwoI	GCNNNNNNNGC	6 cut(s)	161, 170, 267, 476, 635, 687
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	4 cut(s)	129, 196, 304, 787
NlaIII	CATG	5 cut(s)	286, 687, 749, 782, 898
NlaIV	GGNNCC	3 cut(s)	190, 469, 941
NmuCI	GTSAC	1 cut(s)	104
NruI	TCGCGA	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	658
PagI	TCATGA	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	3 cut(s)	566, 696, 867
PfeI	GAWTC	2 cut(s)	94, 643
PkrI	GCNGC	5 cut(s)	45, 88, 712, 715, 962
PleI	GAGTC	4 cut(s)	135, 143, 157, 245
PpsI	GAGTC	4 cut(s)	135, 143, 157, 245
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	190, 469, 941
PspPI	GGNCC	2 cut(s)	119, 474
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	506
RruI	TCGCGA	1 cut(s)	7
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	783
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	17, 48, 242
SatI	GCNGC	5 cut(s)	44, 87, 711, 714, 961
Sau3AI	GATC	4 cut(s)	129, 196, 304, 787
Sau96I	GGNCC	2 cut(s)	119, 474
SchI	GAGTC	4 cut(s)	135, 144, 158, 245
ScrFI	CCNGG	2 cut(s)	472, 671
SduI	GDGCHC	1 cut(s)	472
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	2 cut(s)	814, 877
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	47, 927
SmoI	CTYRAG	2 cut(s)	47, 927
Sse9I	AATT	5 cut(s)	183, 296, 343, 580, 804
SsiI	CCGC	5 cut(s)	43, 122, 155, 428, 477
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	470, 669
TaaI	ACNGT	3 cut(s)	485, 785, 953
TaqI	TCGA	5 cut(s)	92, 97, 249, 366, 852
TasI	AATT	5 cut(s)	183, 296, 343, 580, 804
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	94, 643
Tru1I	TTAA	3 cut(s)	17, 48, 242
Tru9I	TTAA	3 cut(s)	17, 48, 242
TscAI	CASTG	2 cut(s)	151, 976
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	4 cut(s)	86, 710, 713, 960
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	918
TspRI	CASTG	2 cut(s)	151, 976
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	3 cut(s)	296, 343, 580
XmiI	GTMKAC	1 cut(s)	623
XmnI	GAANNNNTTC	3 cut(s)	566, 696, 867
XspI	CTAG	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.