Rh3BG251500

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006586
Physical Location & Seq
Forward (+)
24267405 .. 24270100
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG251500.1

Sequence Viewer

Length: 519 bp
ATGGTTATGTCAGGAGCTACACCTGCCAACCTTCTTGACATACTCCAACCTGCCAGCTTATCTCCAGAGATGATTTCTGAGATGGAAGAGGGATACGGCTTGCTAAGGAATGCCTACATAAACTCAAATATCACGGATGAACAGATGTCCTTTTTGACTAAACAATGGTACATCGGCATACTTTCCCGGATTCGTATTAATGCATTTCGTATTGAGTTGGCTGGGGGATACGATGATCTCCTGTCATCATTAGCAGCCTCTATAGAATCTGAAGCTGCTGTTGGGAATGCTGTTTATATGCTTCCATCCTTTTATAATCATGATTGTGATCCAAATGCCCACATTATATGGATAGAGAATGCAGATGGGAGATTGAAGGCCCTTCGTGATGTGGATGAAGGGGAAGAGCTCCGGATCTGCTATATTGATGCAAGTATGGATCATGATGCTCGGCAGAGTTTCCTGTCACAAGGGTTTGGTTTTCAGTGCAATTGTCCCCGGTGCTTGTCTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

4.39

Isoelectric Point (pI)

64.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 87 - 141 3.6e-08 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 2 cut(s) 31, 58
AccIII TCCGGA 1 cut(s) 411
AclWI GGATC 3 cut(s) 323, 422, 447
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 4 cut(s) 17, 57, 275, 409
AluI AGCT 4 cut(s) 17, 57, 275, 409
Alw21I GWGCWC 1 cut(s) 411
AlwI GGATC 3 cut(s) 323, 422, 447
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 254, 275
AseI ATTAAT 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 2 cut(s) 187, 499
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 262, 266
BccI CCATC 3 cut(s) 76, 313, 359
BceAI ACGGC 1 cut(s) 112
BciVI GTATCC 2 cut(s) 86, 221
BcnI CCSGG 2 cut(s) 187, 499
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 2 cut(s) 31, 58
BfuI GTATCC 2 cut(s) 86, 221
BisI GCNGC 2 cut(s) 255, 276
BlsI GCNGC 2 cut(s) 256, 277
Bme1390I CCNGG 2 cut(s) 187, 499
BmgT120I GGNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 187, 499
BmsI GCATC 2 cut(s) 418, 436
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 187, 499
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 497
BsaWI WCCGGW 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 327
BseAI TCCGGA 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 3 cut(s) 142, 305, 400
BseJI GATNNNNATC 1 cut(s) 327
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 262, 266
BseYI CCCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 3 cut(s) 187, 412, 499
BslFI GGGAC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 3 cut(s) 115, 292, 364
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 411
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 4 cut(s) 235, 328, 414, 439
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 411
BspHI TCATGA 2 cut(s) 319, 442
BspMI ACCTGC 2 cut(s) 31, 58
BspPI GGATC 3 cut(s) 323, 422, 447
BspQI GCTCTTC 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 4 cut(s) 235, 328, 414, 439
Bst6I CTCTTC 2 cut(s) 81, 399
BstC8I GCNNGC 2 cut(s) 55, 101
BstDEI CTNAG 2 cut(s) 78, 104
BstF5I GGATG 3 cut(s) 142, 305, 400
BstKTI GATC 4 cut(s) 238, 331, 417, 442
BstMBI GATC 4 cut(s) 235, 328, 414, 439
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 185, 497
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 262, 266
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BsuI GTATCC 2 cut(s) 86, 221
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 3 cut(s) 142, 305, 400
BtsIMutI CAGTG 1 cut(s) 491
BveI ACCTGC 2 cut(s) 31, 58
Cac8I GCNNGC 2 cut(s) 55, 101
CciI TCATGA 2 cut(s) 319, 442
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 320, 443
CviJI RGCY 8 cut(s) 17, 57, 99, 221, 257, 275, 380, 409
CviKI_1 RGCY 8 cut(s) 17, 57, 99, 221, 257, 275, 380, 409
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 78, 104
DpnI GATC 4 cut(s) 237, 330, 416, 441
DpnII GATC 4 cut(s) 235, 328, 414, 439
Eam1104I CTCTTC 2 cut(s) 81, 399
EarI CTCTTC 2 cut(s) 81, 399
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 2 cut(s) 323, 446
FaqI GGGAC 1 cut(s) 480
FatI CATG 2 cut(s) 319, 442
Fnu4HI GCNGC 2 cut(s) 255, 276
FokI GGATG 3 cut(s) 149, 292, 407
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 255, 276
GluI GCNGC 2 cut(s) 255, 276
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 380
HapII CCGG 3 cut(s) 187, 412, 499
Hin1II CATG 2 cut(s) 323, 446
HinfI GANTC 2 cut(s) 190, 266
HpaII CCGG 3 cut(s) 187, 412, 499
Hpy188I TCNGA 2 cut(s) 79, 271
Hpy188III TCNNGA 7 cut(s) 12, 35, 65, 320, 386, 412, 443
HpyAV CCTTC 4 cut(s) 41, 370, 392, 392
HpyCH4V TGCA 4 cut(s) 203, 362, 431, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 78, 104
Hsp92II CATG 2 cut(s) 323, 446
Kpn2I TCCGGA 1 cut(s) 411
Kzo9I GATC 4 cut(s) 235, 328, 414, 439
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 14, 414
Lsp1109I GCAGC 2 cut(s) 262, 266
LweI GCATC 2 cut(s) 418, 436
MaeIII GTNAC 1 cut(s) 465
MalI GATC 4 cut(s) 237, 330, 416, 441
MboI GATC 4 cut(s) 235, 328, 414, 439
MboII GAAGA 2 cut(s) 98, 416
MfeI CAATTG 1 cut(s) 490
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 82, 268
Mph1103I ATGCAT 1 cut(s) 205
MroI TCCGGA 1 cut(s) 411
MseI TTAA 2 cut(s) 198, 517
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 3 cut(s) 187, 412, 499
MspR9I CCNGG 2 cut(s) 187, 499
MunI CAATTG 1 cut(s) 490
Mva1269I GAATGC 3 cut(s) 115, 292, 364
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 2 cut(s) 187, 499
NdeII GATC 4 cut(s) 235, 328, 414, 439
NlaIII CATG 2 cut(s) 323, 446
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 465
NsiI ATGCAT 1 cut(s) 205
PagI TCATGA 2 cut(s) 319, 442
PaqCI CACCTGC 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 3 cut(s) 115, 292, 364
PfeI GAWTC 2 cut(s) 190, 266
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 2 cut(s) 256, 277
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 198, 517
SatI GCNGC 2 cut(s) 255, 276
Sau3AI GATC 4 cut(s) 235, 328, 414, 439
Sau96I GGNCC 1 cut(s) 379
ScrFI CCNGG 2 cut(s) 187, 499
SduI GDGCHC 1 cut(s) 411
SetI ASST 7 cut(s) 19, 25, 33, 52, 59, 277, 411
SfaNI GCATC 2 cut(s) 418, 436
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 1 cut(s) 490
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 185, 497
TasI AATT 1 cut(s) 490
TfiI GAWTC 2 cut(s) 190, 266
Tru1I TTAA 2 cut(s) 198, 517
Tru9I TTAA 2 cut(s) 198, 517
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 2 cut(s) 254, 275
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 2 cut(s) 153, 411
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 491
VspI ATTAAT 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.