Rh3CG248500

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006586
Physical Location & Seq
Forward (+)
24057247 .. 24061164
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG248500.1

Sequence Viewer

Length: 990 bp
ATGGCGCGTGCCATAGTCCGTTATAGCCGTTGGGCTTCGCGCTCCTTAACATCGAATACCCAAAACGAGCCGTTTCTCTCTTCCGCTGCCGCCACCTTCTCCACCGCACCGGAAAATGCGAATCCGGGTCGACCCGGACCACCTCCGATCCGAGTTGCGCTCACCGAGTCATCCGGGCGAGGCGTCTTCGCGACCCGGAAAATCGAGACCGGTGAGCTCTTACACACCGCCAAACCCATTCTGTCTCACCCTTCTCTCTCCGCCCTCCATAAGGTCTGCTACTTCTGCCTCCGAAAGCTCAAAACCACCGACGCCTCTCAACCCCAAGGCGTTTCCTATTGCAGTGAGGAGTGTCGACAAGAAGCACAGGGATTTCATGATGTTGAGATGACGGCAGATTGGTCAGCTTATGATGACTATTGCCGGTCTAATGGTTTGAAATATCCTCTACTTGTAAAGCGGTTGGCTTGTATGGTTATGTCAGGAGCTACACCTGCCAACCTTCTTGACATACTCCAACCTGCCAGCTTATCTCCAGAGATGATTTCTGAGATGGAAGAGGGGTACGGCTTGCTAAGGAATGCCTACATAAACTCAAATATCACGGATGAACAGATGTCCTTTTTGACTAAACAATGGTACATCGGCATACTTTCCCGGATTCGTATTAATGCATTTCGTATTGAGTTGGCTGGGGGATACGATGATCTCCTGTCATCATTAGCAGCCTCTATAGAATCTGAAGCTGCTGTTGGGAATGGTGTTTATATGCTTCCATCCTTTTATAATCATGATTGTGATCCAAATGCCCACATTATATGGATAGAGAATGCAGATGCGAGATTGAAGGCCCTTCGTGATGTGGATGAAGGGGAAGAGCTCCGGATCTGCTATATTGATGCAAGTATGGATCATGATGCTCGGCAGAGTTTCCTGTCACAAGGGTTTGGTTTTCAGTGCAATTGTCCCCGGTGTTTGTCTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

329

Amino Acids

36.4

Weight (kDa)

5.35

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 59 - 298 2.1e-12 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 2 cut(s) 502, 529
AccI GTMKAC 2 cut(s) 130, 355
AccII CGCG 3 cut(s) 7, 40, 191
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 6 cut(s) 84, 90, 105, 228, 261, 460
AclWI GGATC 4 cut(s) 142, 794, 893, 918
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 2 cut(s) 183, 312
AfaI GTAC 2 cut(s) 566, 641
AfiI CCNNNNNNNGG 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 209
AgsI TTSAA 2 cut(s) 439, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AluBI AGCT 7 cut(s) 217, 298, 407, 488, 528, 746, 880
AluI AGCT 7 cut(s) 217, 298, 407, 488, 528, 746, 880
Alw21I GWGCWC 2 cut(s) 219, 882
Alw26I GTCTC 2 cut(s) 200, 249
AlwI GGATC 4 cut(s) 142, 794, 893, 918
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 3 cut(s) 86, 725, 746
AseI ATTAAT 1 cut(s) 669
AsiGI ACCGGT 1 cut(s) 209
AspLEI GCGC 3 cut(s) 7, 42, 160
AspS9I GGNCC 2 cut(s) 137, 850
AsuC2I CCSGG 6 cut(s) 126, 135, 175, 196, 658, 970
AsuHPI GGTGA 3 cut(s) 154, 224, 239
AvaII GGWCC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 219, 882
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 219, 882
BbvI GCAGC 3 cut(s) 73, 733, 737
BccI CCATC 2 cut(s) 547, 784
BceAI ACGGC 4 cut(s) 12, 55, 408, 583
BciVI GTATCC 1 cut(s) 692
BcnI CCSGG 6 cut(s) 126, 135, 175, 196, 658, 970
BcoDI GTCTC 2 cut(s) 200, 249
BfmI CTRYAG 1 cut(s) 732
BfuAI ACCTGC 2 cut(s) 502, 529
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 4 cut(s) 87, 90, 726, 747
BlsI GCNGC 4 cut(s) 88, 91, 727, 748
Bme1390I CCNGG 6 cut(s) 126, 135, 175, 196, 658, 970
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 850
BmrFI CCNGG 6 cut(s) 126, 135, 175, 196, 658, 970
BmsI GCATC 3 cut(s) 826, 889, 907
BpiI GAAGAC 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 575
BpuMI CCSGG 6 cut(s) 126, 135, 175, 196, 658, 970
BsaBI GATNNNNATC 1 cut(s) 798
BsaHI GRCGYC 2 cut(s) 183, 312
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 325, 968
BsaWI WCCGGW 3 cut(s) 109, 209, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 2 cut(s) 209, 423
Bse8I GATNNNNATC 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 325, 968
BseGI GGATG 4 cut(s) 170, 613, 776, 871
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 73, 733, 737
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 3 cut(s) 7, 40, 191
BshFI GGCC 1 cut(s) 851
BshTI ACCGGT 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 219, 882
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 200, 249
BsmFI GGGAC 1 cut(s) 951
BsmI GAATGC 2 cut(s) 586, 835
BsnI GGCC 1 cut(s) 851
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 219, 882
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 5 cut(s) 147, 706, 799, 885, 910
Bsp68I TCGCGA 1 cut(s) 191
BspACI CCGC 6 cut(s) 84, 90, 105, 228, 261, 460
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 882
BspFNI CGCG 3 cut(s) 7, 40, 191
BspHI TCATGA 3 cut(s) 376, 790, 913
BspMI ACCTGC 2 cut(s) 502, 529
BspPI GGATC 4 cut(s) 142, 794, 893, 918
BspQI GCTCTTC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 2 cut(s) 209, 423
BssAI RCCGGY 2 cut(s) 209, 423
BssECI CCNNGG 2 cut(s) 325, 968
BssMI GATC 5 cut(s) 147, 706, 799, 885, 910
BssNI GRCGYC 2 cut(s) 183, 312
BssT1I CCWWGG 1 cut(s) 325
Bst6I CTCTTC 3 cut(s) 85, 552, 870
BstACI GRCGYC 2 cut(s) 183, 312
BstC8I GCNNGC 3 cut(s) 9, 526, 572
BstDEI CTNAG 2 cut(s) 549, 575
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 4 cut(s) 170, 613, 776, 871
BstFNI CGCG 3 cut(s) 7, 40, 191
BstHHI GCGC 3 cut(s) 7, 42, 160
BstKTI GATC 5 cut(s) 150, 709, 802, 888, 913
BstMAI GTCTC 2 cut(s) 200, 249
BstMBI GATC 5 cut(s) 147, 706, 799, 885, 910
BstMWI GCNNNNNNNGC 2 cut(s) 285, 494
BstSCI CCNGG 6 cut(s) 124, 133, 173, 194, 656, 968
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 3 cut(s) 7, 40, 191
BstV1I GCAGC 3 cut(s) 73, 733, 737
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 885
BstYI RGATCY 1 cut(s) 885
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 1 cut(s) 851
BtsCI GGATG 4 cut(s) 170, 613, 776, 871
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 349, 962
BtuMI TCGCGA 1 cut(s) 191
BveI ACCTGC 2 cut(s) 502, 529
Cac8I GCNNGC 3 cut(s) 9, 526, 572
CciI TCATGA 3 cut(s) 376, 790, 913
CfoI GCGC 3 cut(s) 7, 42, 160
Cfr10I RCCGGY 2 cut(s) 209, 423
Cfr13I GGNCC 2 cut(s) 137, 850
CseI GACGC 2 cut(s) 172, 320
Csp6I GTAC 2 cut(s) 565, 640
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 3 cut(s) 377, 791, 914
CviQI GTAC 2 cut(s) 565, 640
DdeI CTNAG 2 cut(s) 549, 575
DpnI GATC 5 cut(s) 149, 708, 801, 887, 912
DpnII GATC 5 cut(s) 147, 706, 799, 885, 910
Eam1104I CTCTTC 3 cut(s) 85, 552, 870
EarI CTCTTC 3 cut(s) 85, 552, 870
EciI GGCGGA 1 cut(s) 250
Ecl136II GAGCTC 2 cut(s) 217, 880
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 219, 882
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 137
Eco53kI GAGCTC 2 cut(s) 217, 880
Eco57I CTGAAG 1 cut(s) 762
EcoICRI GAGCTC 2 cut(s) 217, 880
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 219, 882
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 3 cut(s) 380, 794, 917
FaqI GGGAC 1 cut(s) 951
FatI CATG 3 cut(s) 376, 790, 913
FblI GTMKAC 2 cut(s) 130, 355
Fnu4HI GCNGC 4 cut(s) 87, 90, 726, 747
FokI GGATG 4 cut(s) 157, 620, 763, 878
FriOI GRGCYC 2 cut(s) 219, 882
Fsp4HI GCNGC 4 cut(s) 87, 90, 726, 747
GlaI GCGC 3 cut(s) 6, 41, 159
GluI GCNGC 4 cut(s) 87, 90, 726, 747
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 851
HgaI GACGC 2 cut(s) 172, 320
HhaI GCGC 3 cut(s) 7, 42, 160
Hin1I GRCGYC 2 cut(s) 183, 312
Hin1II CATG 3 cut(s) 380, 794, 917
Hin6I GCGC 3 cut(s) 5, 40, 158
HinP1I GCGC 3 cut(s) 5, 40, 158
HincII GTYRAC 2 cut(s) 131, 356
HindII GTYRAC 2 cut(s) 131, 356
HinfI GANTC 4 cut(s) 121, 167, 661, 737
HphI GGTGA 3 cut(s) 154, 224, 239
Hpy166II GTNNAC 2 cut(s) 131, 356
Hpy188I TCNGA 5 cut(s) 147, 152, 293, 550, 742
Hpy8I GTNNAC 2 cut(s) 131, 356
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 6 cut(s) 106, 261, 512, 841, 863, 863
HpyCH4V TGCA 5 cut(s) 342, 674, 833, 902, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 494
HpyF3I CTNAG 2 cut(s) 549, 575
Hsp92I GRCGYC 2 cut(s) 183, 312
Hsp92II CATG 3 cut(s) 380, 794, 917
HspAI GCGC 3 cut(s) 5, 40, 158
Kpn2I TCCGGA 1 cut(s) 882
Kzo9I GATC 5 cut(s) 147, 706, 799, 885, 910
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 3 cut(s) 47, 485, 885
Lsp1109I GCAGC 3 cut(s) 73, 733, 737
LweI GCATC 3 cut(s) 826, 889, 907
MaeIII GTNAC 1 cut(s) 936
MalI GATC 5 cut(s) 149, 708, 801, 887, 912
MboI GATC 5 cut(s) 147, 706, 799, 885, 910
MboII GAAGA 4 cut(s) 72, 178, 569, 887
MfeI CAATTG 1 cut(s) 961
MflI RGATCY 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 219, 882
MluCI AATT 1 cut(s) 961
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 9 cut(s) 153, 173, 275, 299, 325, 340, 456, 553, 739
Mph1103I ATGCAT 1 cut(s) 676
MroI TCCGGA 1 cut(s) 882
MseI TTAA 3 cut(s) 47, 669, 988
MslI CAYNNNNRTG 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 6 cut(s) 126, 135, 175, 196, 658, 970
MunI CAATTG 1 cut(s) 961
Mva1269I GAATGC 2 cut(s) 586, 835
MvnI CGCG 3 cut(s) 7, 40, 191
MwoI GCNNNNNNNGC 2 cut(s) 285, 494
NciI CCSGG 6 cut(s) 126, 135, 175, 196, 658, 970
NdeII GATC 5 cut(s) 147, 706, 799, 885, 910
NlaIII CATG 3 cut(s) 380, 794, 917
NmeAIII GCCGAG 1 cut(s) 901
NmuCI GTSAC 1 cut(s) 936
NruI TCGCGA 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 676
PagI TCATGA 3 cut(s) 376, 790, 913
PaqCI CACCTGC 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 870
PctI GAATGC 2 cut(s) 586, 835
PfeI GAWTC 3 cut(s) 121, 661, 737
PfoI TCCNGGA 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 4 cut(s) 88, 91, 727, 748
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 669
PsiI TTATAA 1 cut(s) 786
Psp124BI GAGCTC 2 cut(s) 219, 882
PspFI CCCAGC 1 cut(s) 692
PspPI GGNCC 2 cut(s) 137, 850
PsuI RGATCY 1 cut(s) 885
RruI TCGCGA 1 cut(s) 191
RsaI GTAC 2 cut(s) 566, 641
RsaNI GTAC 2 cut(s) 565, 640
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 2 cut(s) 219, 882
SalI GTCGAC 2 cut(s) 129, 354
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 3 cut(s) 47, 669, 988
SatI GCNGC 4 cut(s) 87, 90, 726, 747
Sau3AI GATC 5 cut(s) 147, 706, 799, 885, 910
Sau96I GGNCC 2 cut(s) 137, 850
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 6 cut(s) 126, 135, 175, 196, 658, 970
SduI GDGCHC 2 cut(s) 219, 882
SfaNI GCATC 3 cut(s) 826, 889, 907
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 795
Sse9I AATT 1 cut(s) 961
SsiI CCGC 6 cut(s) 84, 90, 105, 228, 261, 460
SstI GAGCTC 2 cut(s) 219, 882
StyD4I CCNGG 6 cut(s) 124, 133, 173, 194, 656, 968
StyI CCWWGG 1 cut(s) 325
TaqI TCGA 4 cut(s) 53, 130, 204, 355
TasI AATT 1 cut(s) 961
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 121, 661, 737
Tru1I TTAA 3 cut(s) 47, 669, 988
Tru9I TTAA 3 cut(s) 47, 669, 988
TscAI CASTG 2 cut(s) 349, 962
TseFI GTSAC 1 cut(s) 936
TseI GCWGC 3 cut(s) 86, 725, 746
Tsp45I GTSAC 1 cut(s) 936
TspDTI ATGAA 3 cut(s) 365, 624, 882
TspGWI ACGGA 2 cut(s) 8, 620
TspRI CASTG 2 cut(s) 349, 962
VpaK11BI GGWCC 1 cut(s) 137
VspI ATTAAT 1 cut(s) 669
XagI CCTNNNNNAGG 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 130, 355
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.