Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001519.1

Orthogroup ID

OG0006586

Physical Location & Seq

Genomic Coordinates Reverse (-)

42768 .. 46679

Gene Structure 3912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001519.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggcgcgtgccatagtccgttatagccgttgggcttcgcgctccttaacatcgaatacccaaaacgagccgtttctctcttccgctgccgccaccttttccaccgcaccggaaaatgcgaatccgggtcgacccggaccacctccgatccgagttgcgctcaccgagtcatccgggcgaggcgtcttcgcgacccggaaaatcgagaccggtgagctcttacacaccgccaaacccattctgtctcacccttctctctccgccctccataaggtctgctacttctgcctccgaaagctcaaaaccaccgacgcccctcaaccccaaggcgtttcctattgcagtgaggagtgtcgacaagaagcacagggatttcatgatgttgagatgacggcagattggtcagcttatgatgactattgccggtctaatcgtttgaaatatcctctacttgtaaagcggttggcttgtatggttatgtcaggagctacacctgccaaccttcttgacatactccaacctgccagcttatctccagagatgatttctgagatggaagaggggtacggcttgctaaggaatgcctacataaactcaaatatcacggatgaacagatgtcctttttgactaaacaatggtacatcggcatactttcccggattcgtattaatgcatttcgtattgagttggctgggggatacgatgatctcctgtcatcattagcagcctctatagaatctgaagctgctgttgggaatgctgtttatatgcttccatccttttataatcatgattgtgatccaaatgcccacattatatggatagagaatgcagatgcgagattgaaggcccttcgtgatgtggatgaaggggaagagctccggatctgctatattgatgcaagtatggatcatgatgctcggcagagtttcctgtcacaagggtttggttttcagtgcaattgtccccggtgtttgtctggtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

329

Amino Acids

36.53

Weight (kDa)

5.46

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06620 AT5G06620
fragaria_vesca	FvH4_6g21530 FvH4_6g21530 FvH4_6g21530 FvH4_6g21530 FvH4_6g21530
malus_domestica	MD12G1052100.v1.1
prunus_persica	Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1 Prupe.7G085000_v2.0.a1
pyrus_communis	pycom12g04590
rosa_chinensis	RchiOBHm_Chr3g0478741 RchiOBHm_Chr3g0478761
rosa_laevigata	RLG00000023628
rosa_multiflora	Rmu_sc0001519.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403110
rosa_rugosa	Rorug03G0167600 Rorug03G0167700 Rorug03G0167800
rosa_samantha	Rh3AG219700 Rh3BG251500 Rh3CG248500 Rh3DG244700
rosa_wichuraiana	Rw3G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	2 cut(s)	502, 529
AccI	GTMKAC	2 cut(s)	130, 355
AccII	CGCG	3 cut(s)	7, 40, 191
AccIII	TCCGGA	1 cut(s)	882
AciI	CCGC	6 cut(s)	84, 90, 105, 228, 261, 460
AclWI	GGATC	4 cut(s)	142, 794, 893, 918
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	2 cut(s)	183, 312
AfaI	GTAC	2 cut(s)	566, 641
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	439, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AluBI	AGCT	7 cut(s)	217, 298, 407, 488, 528, 746, 880
AluI	AGCT	7 cut(s)	217, 298, 407, 488, 528, 746, 880
Alw21I	GWGCWC	2 cut(s)	219, 882
Alw26I	GTCTC	2 cut(s)	200, 249
AlwI	GGATC	4 cut(s)	142, 794, 893, 918
Aor13HI	TCCGGA	1 cut(s)	882
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	3 cut(s)	86, 725, 746
AseI	ATTAAT	1 cut(s)	669
AsiGI	ACCGGT	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	7, 42, 160
AspS9I	GGNCC	2 cut(s)	137, 850
AsuC2I	CCSGG	6 cut(s)	126, 135, 175, 196, 658, 970
AsuHPI	GGTGA	3 cut(s)	154, 224, 239
AvaII	GGWCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	219, 882
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	219, 882
BbvI	GCAGC	3 cut(s)	73, 733, 737
BccI	CCATC	2 cut(s)	547, 784
BceAI	ACGGC	4 cut(s)	12, 55, 408, 583
BciVI	GTATCC	1 cut(s)	692
BcnI	CCSGG	6 cut(s)	126, 135, 175, 196, 658, 970
BcoDI	GTCTC	2 cut(s)	200, 249
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	2 cut(s)	502, 529
BfuI	GTATCC	1 cut(s)	692
BisI	GCNGC	4 cut(s)	87, 90, 726, 747
BlsI	GCNGC	4 cut(s)	88, 91, 727, 748
Bme1390I	CCNGG	6 cut(s)	126, 135, 175, 196, 658, 970
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 850
BmrFI	CCNGG	6 cut(s)	126, 135, 175, 196, 658, 970
BmsI	GCATC	3 cut(s)	826, 889, 907
BpiI	GAAGAC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	575
BpuMI	CCSGG	6 cut(s)	126, 135, 175, 196, 658, 970
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	2 cut(s)	183, 312
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	325, 968
BsaWI	WCCGGW	3 cut(s)	109, 209, 882
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	2 cut(s)	209, 423
Bse8I	GATNNNNATC	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	325, 968
BseGI	GGATG	4 cut(s)	170, 613, 776, 871
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	73, 733, 737
BseYI	CCCAGC	1 cut(s)	692
Bsh1236I	CGCG	3 cut(s)	7, 40, 191
BshFI	GGCC	1 cut(s)	851
BshTI	ACCGGT	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	219, 882
BslFI	GGGAC	1 cut(s)	951
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	200, 249
BsmFI	GGGAC	1 cut(s)	951
BsmI	GAATGC	3 cut(s)	586, 763, 835
BsnI	GGCC	1 cut(s)	851
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	219, 882
Bsp13I	TCCGGA	1 cut(s)	882
Bsp143I	GATC	5 cut(s)	147, 706, 799, 885, 910
Bsp68I	TCGCGA	1 cut(s)	191
BspACI	CCGC	6 cut(s)	84, 90, 105, 228, 261, 460
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	882
BspFNI	CGCG	3 cut(s)	7, 40, 191
BspHI	TCATGA	3 cut(s)	376, 790, 913
BspMI	ACCTGC	2 cut(s)	502, 529
BspPI	GGATC	4 cut(s)	142, 794, 893, 918
BspQI	GCTCTTC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	209, 423
BssAI	RCCGGY	2 cut(s)	209, 423
BssECI	CCNNGG	2 cut(s)	325, 968
BssMI	GATC	5 cut(s)	147, 706, 799, 885, 910
BssNI	GRCGYC	2 cut(s)	183, 312
BssT1I	CCWWGG	1 cut(s)	325
Bst6I	CTCTTC	3 cut(s)	85, 552, 870
BstACI	GRCGYC	2 cut(s)	183, 312
BstC8I	GCNNGC	3 cut(s)	9, 526, 572
BstDEI	CTNAG	2 cut(s)	549, 575
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	170, 613, 776, 871
BstFNI	CGCG	3 cut(s)	7, 40, 191
BstHHI	GCGC	3 cut(s)	7, 42, 160
BstKTI	GATC	5 cut(s)	150, 709, 802, 888, 913
BstMAI	GTCTC	2 cut(s)	200, 249
BstMBI	GATC	5 cut(s)	147, 706, 799, 885, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 494
BstSCI	CCNGG	6 cut(s)	124, 133, 173, 194, 656, 968
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	3 cut(s)	7, 40, 191
BstV1I	GCAGC	3 cut(s)	73, 733, 737
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	885
BstYI	RGATCY	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	851
BtsCI	GGATG	4 cut(s)	170, 613, 776, 871
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	349, 962
BtuMI	TCGCGA	1 cut(s)	191
BveI	ACCTGC	2 cut(s)	502, 529
Cac8I	GCNNGC	3 cut(s)	9, 526, 572
CciI	TCATGA	3 cut(s)	376, 790, 913
CfoI	GCGC	3 cut(s)	7, 42, 160
Cfr10I	RCCGGY	2 cut(s)	209, 423
Cfr13I	GGNCC	2 cut(s)	137, 850
CseI	GACGC	2 cut(s)	172, 320
Csp6I	GTAC	2 cut(s)	565, 640
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	3 cut(s)	377, 791, 914
CviQI	GTAC	2 cut(s)	565, 640
DdeI	CTNAG	2 cut(s)	549, 575
DpnI	GATC	5 cut(s)	149, 708, 801, 887, 912
DpnII	GATC	5 cut(s)	147, 706, 799, 885, 910
Eam1104I	CTCTTC	3 cut(s)	85, 552, 870
EarI	CTCTTC	3 cut(s)	85, 552, 870
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	2 cut(s)	217, 880
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	219, 882
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	137
Eco53kI	GAGCTC	2 cut(s)	217, 880
Eco57I	CTGAAG	1 cut(s)	762
EcoICRI	GAGCTC	2 cut(s)	217, 880
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	219, 882
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	380, 794, 917
FaqI	GGGAC	1 cut(s)	951
FatI	CATG	3 cut(s)	376, 790, 913
FblI	GTMKAC	2 cut(s)	130, 355
Fnu4HI	GCNGC	4 cut(s)	87, 90, 726, 747
FokI	GGATG	4 cut(s)	157, 620, 763, 878
FriOI	GRGCYC	2 cut(s)	219, 882
Fsp4HI	GCNGC	4 cut(s)	87, 90, 726, 747
GlaI	GCGC	3 cut(s)	6, 41, 159
GluI	GCNGC	4 cut(s)	87, 90, 726, 747
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	851
HgaI	GACGC	2 cut(s)	172, 320
HhaI	GCGC	3 cut(s)	7, 42, 160
Hin1I	GRCGYC	2 cut(s)	183, 312
Hin1II	CATG	3 cut(s)	380, 794, 917
Hin6I	GCGC	3 cut(s)	5, 40, 158
HinP1I	GCGC	3 cut(s)	5, 40, 158
HincII	GTYRAC	2 cut(s)	131, 356
HindII	GTYRAC	2 cut(s)	131, 356
HinfI	GANTC	4 cut(s)	121, 167, 661, 737
HphI	GGTGA	3 cut(s)	154, 224, 239
Hpy166II	GTNNAC	2 cut(s)	131, 356
Hpy188I	TCNGA	5 cut(s)	147, 152, 293, 550, 742
Hpy8I	GTNNAC	2 cut(s)	131, 356
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	5 cut(s)	261, 512, 841, 863, 863
HpyCH4V	TGCA	5 cut(s)	342, 674, 833, 902, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 494
HpyF3I	CTNAG	2 cut(s)	549, 575
Hsp92I	GRCGYC	2 cut(s)	183, 312
Hsp92II	CATG	3 cut(s)	380, 794, 917
HspAI	GCGC	3 cut(s)	5, 40, 158
Kpn2I	TCCGGA	1 cut(s)	882
Kzo9I	GATC	5 cut(s)	147, 706, 799, 885, 910
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	3 cut(s)	47, 485, 885
Lsp1109I	GCAGC	3 cut(s)	73, 733, 737
LweI	GCATC	3 cut(s)	826, 889, 907
MaeIII	GTNAC	1 cut(s)	936
MalI	GATC	5 cut(s)	149, 708, 801, 887, 912
MboI	GATC	5 cut(s)	147, 706, 799, 885, 910
MboII	GAAGA	4 cut(s)	72, 178, 569, 887
MfeI	CAATTG	1 cut(s)	961
MflI	RGATCY	1 cut(s)	885
MhlI	GDGCHC	2 cut(s)	219, 882
MluCI	AATT	1 cut(s)	961
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	9 cut(s)	153, 173, 275, 299, 327, 340, 456, 553, 739
Mph1103I	ATGCAT	1 cut(s)	676
MroI	TCCGGA	1 cut(s)	882
MseI	TTAA	3 cut(s)	47, 669, 988
MslI	CAYNNNNRTG	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	6 cut(s)	126, 135, 175, 196, 658, 970
MunI	CAATTG	1 cut(s)	961
Mva1269I	GAATGC	3 cut(s)	586, 763, 835
MvnI	CGCG	3 cut(s)	7, 40, 191
MwoI	GCNNNNNNNGC	2 cut(s)	285, 494
NciI	CCSGG	6 cut(s)	126, 135, 175, 196, 658, 970
NdeII	GATC	5 cut(s)	147, 706, 799, 885, 910
NlaIII	CATG	3 cut(s)	380, 794, 917
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	936
NruI	TCGCGA	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	676
PagI	TCATGA	3 cut(s)	376, 790, 913
PaqCI	CACCTGC	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	3 cut(s)	586, 763, 835
PfeI	GAWTC	3 cut(s)	121, 661, 737
PfoI	TCCNGGA	1 cut(s)	656
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	88, 91, 727, 748
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	786
Psp124BI	GAGCTC	2 cut(s)	219, 882
PspFI	CCCAGC	1 cut(s)	692
PspPI	GGNCC	2 cut(s)	137, 850
PsuI	RGATCY	1 cut(s)	885
RruI	TCGCGA	1 cut(s)	191
RsaI	GTAC	2 cut(s)	566, 641
RsaNI	GTAC	2 cut(s)	565, 640
RseI	CAYNNNNRTG	1 cut(s)	795
SacI	GAGCTC	2 cut(s)	219, 882
SalI	GTCGAC	2 cut(s)	129, 354
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	3 cut(s)	47, 669, 988
SatI	GCNGC	4 cut(s)	87, 90, 726, 747
Sau3AI	GATC	5 cut(s)	147, 706, 799, 885, 910
Sau96I	GGNCC	2 cut(s)	137, 850
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	6 cut(s)	126, 135, 175, 196, 658, 970
SduI	GDGCHC	2 cut(s)	219, 882
SfaNI	GCATC	3 cut(s)	826, 889, 907
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	795
Sse9I	AATT	1 cut(s)	961
SsiI	CCGC	6 cut(s)	84, 90, 105, 228, 261, 460
SstI	GAGCTC	2 cut(s)	219, 882
StyD4I	CCNGG	6 cut(s)	124, 133, 173, 194, 656, 968
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	4 cut(s)	53, 130, 204, 355
TasI	AATT	1 cut(s)	961
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	121, 661, 737
Tru1I	TTAA	3 cut(s)	47, 669, 988
Tru9I	TTAA	3 cut(s)	47, 669, 988
TscAI	CASTG	2 cut(s)	349, 962
TseFI	GTSAC	1 cut(s)	936
TseI	GCWGC	3 cut(s)	86, 725, 746
Tsp45I	GTSAC	1 cut(s)	936
TspDTI	ATGAA	3 cut(s)	365, 624, 882
TspGWI	ACGGA	2 cut(s)	8, 620
TspRI	CASTG	2 cut(s)	349, 962
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	669
XagI	CCTNNNNNAGG	1 cut(s)	269
XmiI	GTMKAC	2 cut(s)	130, 355
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.