RchiOBHm_Chr3g0478761

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006586
Physical Location & Seq
Forward (+)
24433327 .. 24434638
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44392

Sequence Viewer

Length: 222 bp
ATGCTTCCATCCTTTTATAATCATGATTGTGATCCAAATGGCCACATTATATGGATAGAGAATGCAGATGCGAGATTGAAGGCCCTTCGTGATGTGGATGAAGGGGAAGAGCTCCGGATCTGCTATATTGATGCAAGTATGGATCATGATGCTCGGCAGAGTTTCCTGTCACAAGGGTTTGGTTTTCAGTGCAATTGTCCCCGGTGTTTGTCTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

73

Amino Acids

8.32

Weight (kDa)

4.6

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 4 - 42 1.4e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 114
AclWI GGATC 3 cut(s) 26, 125, 150
AcoI YGGCCR 1 cut(s) 40
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 3 cut(s) 26, 125, 150
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 2 cut(s) 40, 81
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 202
BalI TGGCCA 1 cut(s) 42
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 3 cut(s) 58, 121, 139
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 8, 103
BseJI GATNNNNATC 1 cut(s) 30
BshFI GGCC 2 cut(s) 42, 83
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 115, 202
BslFI GGGAC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 42, 83
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 31, 117, 142
BspANI GGCC 2 cut(s) 42, 83
BspEI TCCGGA 1 cut(s) 114
BspHI TCATGA 2 cut(s) 22, 145
BspPI GGATC 3 cut(s) 26, 125, 150
BspQI GCTCTTC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 31, 117, 142
Bst6I CTCTTC 1 cut(s) 102
BstF5I GGATG 2 cut(s) 8, 103
BstKTI GATC 3 cut(s) 34, 120, 145
BstMBI GATC 3 cut(s) 31, 117, 142
BstSCI CCNGG 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 2 cut(s) 42, 83
BtsCI GGATG 2 cut(s) 8, 103
BtsIMutI CAGTG 1 cut(s) 194
CciI TCATGA 2 cut(s) 22, 145
Cfr13I GGNCC 1 cut(s) 82
CviAII CATG 2 cut(s) 23, 146
CviJI RGCY 3 cut(s) 42, 83, 112
CviKI_1 RGCY 3 cut(s) 42, 83, 112
DpnI GATC 3 cut(s) 33, 119, 144
DpnII GATC 3 cut(s) 31, 117, 142
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 2 cut(s) 26, 149
FaiI YATR 7 cut(s) 18, 24, 50, 52, 126, 140, 147
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 22, 145
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 42, 83
HapII CCGG 2 cut(s) 115, 202
Hin1II CATG 2 cut(s) 26, 149
HpaII CCGG 2 cut(s) 115, 202
Hpy188III TCNNGA 4 cut(s) 23, 89, 115, 146
HpyAV CCTTC 3 cut(s) 73, 95, 95
HpyCH4V TGCA 3 cut(s) 65, 134, 192
Hsp92II CATG 2 cut(s) 26, 149
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 31, 117, 142
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 128, 179, 198, 215
LweI GCATC 3 cut(s) 58, 121, 139
MaeIII GTNAC 1 cut(s) 168
MalI GATC 3 cut(s) 33, 119, 144
MboI GATC 3 cut(s) 31, 117, 142
MboII GAAGA 1 cut(s) 119
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 42
MroI TCCGGA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 2 cut(s) 115, 202
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 202
NdeII GATC 3 cut(s) 31, 117, 142
NlaIII CATG 2 cut(s) 26, 149
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 168
PagI TCATGA 2 cut(s) 22, 145
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 220
Sau3AI GATC 3 cut(s) 31, 117, 142
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 114
SetI ASST 1 cut(s) 114
SfaNI GCATC 3 cut(s) 58, 121, 139
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 193
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 200
TasI AATT 1 cut(s) 193
Tru1I TTAA 1 cut(s) 220
Tru9I TTAA 1 cut(s) 220
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.