AT5G07440

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2355759 .. 2358241
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07440.1

Sequence Viewer

Length: 1236 bp
ATGAATGCTTTAGCTGCAACAAACAGAAACTTCCGTCATGCATCTCGAATCCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGATCCCATTTAGAGAAATCAAGGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATACATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTAGTCCTCGTGACTTGAGTTTGAGCGAGCTTGAGAGGTTGACTCGTGTGTTTACACAGAAGATTCATGATCTTATCGGTATTCATACCGATGTGCCTGCTCCTGATATGGGCACTAACGCTCAAACCATGGCTTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTATTTGCCACCGAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGCGGTAAAGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAACGCTCTCATAAAACACAAGGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGCTATGAATTCAGATGAATTGCTCATTCATGAGTGTGATGTTCTCATTCCATGCGCTCTTGGTGGTGTCCTGAACAAGGAAAATGCTGGAGATGTGAAGGCAAAGTTTATAGTAGAGGCAGCTAACCATCCAACAGATCCAGATGCTGATGAGATTCTGTCGAAGAAAGGAGTGATTATACTTCCAGATATCTACGCAAACGCAGGAGGAGTGACAGTGAGTTACTTCGAGTGGGTGCAGAACATTCAAGGATTCATGTGGGAAGAGGAAAAAGTGAACTTGGAGCTGCAAAAATACATGACTCGAGCCTTTCACAACATCAAGACAATGTGCCATACTCATTCTTGCAACCTCCGTATGGGAGCTTTCACTCTTGGAGTTAACCGAGTCGCTCGAGCCACCCAGTTGCGTGGTTGGGAAGCTTAA

Protein Analysis

411

Amino Acids

44.7

Weight (kDa)

6.07

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELFV_dehydrog_N PF02812 33 - 159 1.2e-49 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog PF00208 176 - 408 2.7e-83 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 296, 453
AciI CCGC 1 cut(s) 687
AclWI GGATC 4 cut(s) 82, 221, 667, 941
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 3 cut(s) 118, 470, 599
AfiI CCNNNNNNNGG 7 cut(s) 58, 197, 296, 428, 453, 886, 1168
AgsI TTSAA 4 cut(s) 170, 635, 799, 1058
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
Alw26I GTCTC 2 cut(s) 791, 801
AlwI GGATC 4 cut(s) 82, 221, 667, 941
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 2 cut(s) 1113, 1203
ApeKI GCWGC 5 cut(s) 14, 548, 662, 929, 1096
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 1 cut(s) 188
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 2 cut(s) 1113, 1203
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 434
BauI CACGAG 4 cut(s) 183, 327, 363, 677
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 4 cut(s) 535, 649, 941, 1083
BccI CCATC 2 cut(s) 128, 945
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 791, 801
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 5 cut(s) 15, 549, 663, 930, 1097
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 5 cut(s) 16, 550, 664, 931, 1098
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 2 cut(s) 1113, 1203
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 731
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 1207
BmsI GCATC 2 cut(s) 50, 943
BmuI ACTGGG 1 cut(s) 1207
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 346, 378
BpmI CTGGAG 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 355, 371
Bsa29I ATCGAT 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 52, 447
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 197, 296, 428, 453, 886, 1168
Bse1I ACTGG 4 cut(s) 511, 721, 784, 1213
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 52, 447
BseGI GGATG 3 cut(s) 214, 323, 937
BseLI CCNNNNNNNGG 7 cut(s) 58, 197, 296, 428, 453, 886, 1168
BseMII CTCAG 3 cut(s) 210, 266, 585
BseNI ACTGG 4 cut(s) 511, 721, 784, 1213
BseRI GAGGAG 1 cut(s) 1032
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 4 cut(s) 535, 649, 941, 1083
BsgI GTGCAG 1 cut(s) 1067
BshVI ATCGAT 1 cut(s) 608
BsiHKCI CYCGRG 2 cut(s) 1113, 1203
BslI CCNNNNNNNGG 7 cut(s) 58, 197, 296, 428, 453, 886, 1168
BsmAI GTCTC 2 cut(s) 791, 801
BsmBI CGTCTC 1 cut(s) 801
BsmI GAATGC 1 cut(s) 10
BsoBI CYCGRG 2 cut(s) 1113, 1203
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 1 cut(s) 687
BspCNI CTCAG 3 cut(s) 211, 265, 586
BspDI ATCGAT 1 cut(s) 608
BspHI TCATGA 2 cut(s) 385, 838
BspLI GGNNCC 2 cut(s) 190, 731
BspPI GGATC 4 cut(s) 82, 221, 667, 941
BspQI GCTCTTC 1 cut(s) 591
BspT104I TTCGAA 1 cut(s) 65
BsrI ACTGG 4 cut(s) 511, 721, 784, 1213
BssECI CCNNGG 2 cut(s) 52, 447
BssMI GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
BssSI CACGAG 4 cut(s) 183, 327, 363, 677
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 4 cut(s) 183, 327, 363, 677
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 1027
Bst6I CTCTTC 2 cut(s) 591, 1068
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 347, 417
BstDEI CTNAG 3 cut(s) 219, 252, 594
BstDSI CCRYGG 1 cut(s) 447
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 3 cut(s) 214, 323, 937
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 7 cut(s) 72, 90, 229, 391, 523, 675, 949
BstMAI GTCTC 2 cut(s) 791, 801
BstMBI GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
BstMWI GCNNNNNNNGC 3 cut(s) 14, 581, 590
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 4 cut(s) 535, 649, 941, 1083
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 1220
BstYI RGATCY 1 cut(s) 946
Bsu15I ATCGAT 1 cut(s) 608
Bsu36I CCTNAGG 1 cut(s) 219
BsuTUI ATCGAT 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 3 cut(s) 214, 323, 937
BtsIMutI CAGTG 2 cut(s) 504, 1032
Cac8I GCNNGC 2 cut(s) 347, 417
CaiI CAGNNNCTG 1 cut(s) 956
CciI TCATGA 2 cut(s) 385, 838
CfoI GCGC 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 608
CseI GACGC 2 cut(s) 782, 818
Csp6I GTAC 3 cut(s) 117, 469, 598
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviQI GTAC 3 cut(s) 117, 469, 598
DdeI CTNAG 3 cut(s) 219, 252, 594
DpnI GATC 7 cut(s) 71, 89, 228, 390, 522, 674, 948
DpnII GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
Eam1104I CTCTTC 2 cut(s) 591, 1068
EarI CTCTTC 2 cut(s) 591, 1068
Eco130I CCWWGG 1 cut(s) 447
Eco32I GATATC 2 cut(s) 212, 1000
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 2 cut(s) 1113, 1203
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 2 cut(s) 212, 1000
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 801
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 5 cut(s) 15, 549, 663, 930, 1097
FokI GGATG 3 cut(s) 201, 330, 924
Fsp4HI GCNGC 5 cut(s) 15, 549, 663, 930, 1097
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 865
GluI GCNGC 5 cut(s) 15, 549, 663, 930, 1097
GsuI CTGGAG 1 cut(s) 918
HgaI GACGC 2 cut(s) 782, 818
HhaI GCGC 1 cut(s) 866
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HincII GTYRAC 3 cut(s) 241, 360, 1192
HindII GTYRAC 3 cut(s) 241, 360, 1192
HindIII AAGCTT 1 cut(s) 1230
HpaI GTTAAC 2 cut(s) 241, 1192
Hpy166II GTNNAC 7 cut(s) 117, 188, 241, 360, 372, 1087, 1192
Hpy188I TCNGA 3 cut(s) 158, 209, 823
Hpy8I GTNNAC 7 cut(s) 117, 188, 241, 360, 372, 1087, 1192
HpyAV CCTTC 2 cut(s) 731, 901
HpyCH4III ACNGT 1 cut(s) 1027
HpyCH4V TGCA 7 cut(s) 17, 41, 701, 722, 1048, 1099, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 581, 590
HpyF3I CTNAG 3 cut(s) 219, 252, 594
HspAI GCGC 1 cut(s) 864
KspAI GTTAAC 2 cut(s) 241, 1192
Kzo9I GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 3 cut(s) 424, 1093, 1172
Lsp1109I GCAGC 4 cut(s) 535, 649, 941, 1083
LweI GCATC 2 cut(s) 50, 943
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 4 cut(s) 329, 502, 1021, 1031
MalI GATC 7 cut(s) 71, 89, 228, 390, 522, 674, 948
MboI GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
MboII GAAGA 6 cut(s) 79, 280, 391, 578, 985, 1085
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 3 cut(s) 312, 817, 827
MlyI GAGTC 3 cut(s) 355, 1105, 1206
MmeI TCCRAC 2 cut(s) 631, 965
MnlI CCTC 7 cut(s) 214, 336, 348, 919, 1010, 1069, 1172
Mph1103I ATGCAT 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 240, 1191, 1234
MslI CAYNNNNRTG 3 cut(s) 177, 408, 843
MspA1I CMGCKG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 14, 581, 590
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 292
NdeII GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
NlaIV GGNNCC 2 cut(s) 190, 731
NmuCI GTSAC 3 cut(s) 329, 502, 1021
NsiI ATGCAT 1 cut(s) 43
NspV TTCGAA 1 cut(s) 65
PaeR7I CTCGAG 2 cut(s) 1113, 1203
PagI TCATGA 2 cut(s) 385, 838
PciSI GCTCTTC 1 cut(s) 591
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 9 cut(s) 48, 62, 121, 204, 382, 457, 610, 964, 1062
PflMI CCANNNNNTGG 2 cut(s) 296, 453
PkrI GCNGC 5 cut(s) 16, 550, 664, 931, 1098
PleI GAGTC 3 cut(s) 355, 1105, 1205
PpsI GAGTC 3 cut(s) 355, 1105, 1205
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 190, 731
PspPI GGNCC 1 cut(s) 188
PspXI VCTCGAGB 2 cut(s) 1113, 1203
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 3 cut(s) 118, 470, 599
RsaNI GTAC 3 cut(s) 117, 469, 598
RseI CAYNNNNRTG 3 cut(s) 177, 408, 843
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 3 cut(s) 240, 1191, 1234
SatI GCNGC 5 cut(s) 15, 549, 663, 930, 1097
Sau3AI GATC 7 cut(s) 69, 87, 226, 388, 520, 672, 946
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 3 cut(s) 355, 1105, 1206
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 434
SfaNI GCATC 2 cut(s) 50, 943
SfcI CTRYAG 1 cut(s) 276
Sfr274I CTCGAG 2 cut(s) 1113, 1203
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 188
SlaI CTCGAG 2 cut(s) 1113, 1203
SmiMI CAYNNNNRTG 3 cut(s) 177, 408, 843
SmlI CTYRAG 4 cut(s) 334, 350, 1113, 1203
SmoI CTYRAG 4 cut(s) 334, 350, 1113, 1203
Sse9I AATT 3 cut(s) 312, 817, 827
SsiI CCGC 1 cut(s) 687
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 1027
TaqI TCGA 9 cut(s) 46, 65, 72, 608, 744, 971, 1038, 1114, 1204
TasI AATT 3 cut(s) 312, 817, 827
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 9 cut(s) 48, 62, 121, 204, 382, 457, 610, 964, 1062
Tru1I TTAA 3 cut(s) 240, 1191, 1234
Tru9I TTAA 3 cut(s) 240, 1191, 1234
TscAI CASTG 2 cut(s) 511, 1032
TseFI GTSAC 3 cut(s) 329, 502, 1021
TseI GCWGC 5 cut(s) 14, 548, 662, 929, 1096
Tsp45I GTSAC 3 cut(s) 329, 502, 1021
TspGWI ACGGA 2 cut(s) 23, 1154
TspRI CASTG 2 cut(s) 511, 1032
Van91I CCANNNNNTGG 2 cut(s) 296, 453
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 884
XapI RAATTY 1 cut(s) 817
XhoI CTCGAG 2 cut(s) 1113, 1203
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.