pycom01g18610

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
17527463 .. 17529881
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18610.5

Sequence Viewer

Length: 1221 bp
ATGAACGCCCTCGCCGCAACAAGCCGCAATTTCAAAAACGCCGCGCGTATTCTCGGACTCGATGCGAAGATTGAGAAGAGTCTCTTGATCCCCTTCAGAGAGATCAAGGTGGAGTGCACAATTCCTAAGGACGATGGAAGCTTGGTGTCGTACGTTGGATTCAGAGTGCAACATGATAATGCACGTGGACCAATGAAGGGAGGGATCAGATATCATCCTGAGGTTGATCCGGATGAAGTGAATGCCCTGGCTCAGCTGATGACCTGGAAGACTGCTGTGGCAGACATTCCATATGGTGGAGCCAAGGGTGGAATTGGATGCACCCCGAGGGACTTAAGTATGAGCGAGTTGGAGCGTCTGACTCGCGTCTTCACTCAGAAAATCCATGATCTCATTGGAATTCATACTGATGTTCCCGCACCCGATATGGGCACCAATGCACAGACCATGGCATGGATTTTGGATGAGTACTCCAAATTTCATGGTCACTCACCAGCTGTTGTCACTGGAAAGCCCATAGTAAGTAGGGAGGCTGCAACTGGTCGCGGTGTTGTTTTTGGAACAGAAGCTTTACTTGCAGAATATGGGAAGTCATGCAAGGGCTTGACTTTTGTTATTCAGGGTTTCGGAAATGTGGGATCCTGGGCAGCAAAGCTTATACATGAGAAAGGTGGTAAGGTCATTGCTGTAAGTGACATTAGTGGTGCAGTTAAGAACCCGAATGGGCTTGATATCATTGAGTTGGTTAAGCACAAGGAAAGCACTGGGAGTCTGTTAAATTTCAGTGGCGGAGATAACATGGATCCTAATGAGATACTTATACACGAATGCGATGTTCTCATCCCTTCTGCTTTAGGTGGAGTTCTGAACAGGGAAAATGCTTCATCTGTGAGAGCAAAATTCATTGTTGAGGCAGCAAATCACCCTACCGATCCAGAAGCTGATGAGATTTTATCCAAGAAAGGGATTATCATACTGCCAGACATATACGCAAATGCTGGTGGTGTGACTGTTAGCTACTTTGAGTGGGTTCAGAACATTCAAGGGTTTATGTGGGAGGAAGAGAAAGTGAATAACGAGCTTCAGAGGTACATGACTCGGGCGTTTCATAACATCAAGAGCATGTGCAAGACCTATGATTGTAATCTCAGAATGGGTGCCTTCACATTGGGTGTAAACCGGGTTGCGCGCGCCACCAACTTAAGGGGTTGGGAAGCATAA

Protein Analysis

407

Amino Acids

44.25

Weight (kDa)

6.43

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 431, 1157
AccB7I CCANNNNNTGG 2 cut(s) 296, 453
AccII CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 6 cut(s) 15, 25, 42, 417, 546, 789
AclWI GGATC 8 cut(s) 82, 212, 221, 633, 646, 797, 810, 926
AcsI RAATTY 4 cut(s) 399, 476, 778, 899
AcuI CTGAAG 2 cut(s) 79, 1067
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 3 cut(s) 152, 470, 1091
AfiI CCNNNNNNNGG 6 cut(s) 197, 296, 428, 453, 963, 1203
AflII CTTAAG 2 cut(s) 334, 1201
AgsI TTSAA 2 cut(s) 34, 1043
AjnI CCWGG 3 cut(s) 246, 263, 641
AluBI AGCT 8 cut(s) 141, 256, 497, 569, 655, 941, 1017, 1081
AluI AGCT 8 cut(s) 141, 256, 497, 569, 655, 941, 1017, 1081
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 8 cut(s) 82, 212, 221, 633, 646, 797, 810, 926
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 2 cut(s) 325, 1098
Aor13HI TCCGGA 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 533, 647, 914
ApoI RAATTY 4 cut(s) 399, 476, 778, 899
AspLEI GCGC 4 cut(s) 46, 1189, 1191, 1193
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 1181
AsuHPI GGTGA 2 cut(s) 483, 914
AvaI CYCGRG 2 cut(s) 325, 1098
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 2 cut(s) 126, 219
BaeGI GKGCMC 2 cut(s) 119, 434
BamHI GGATCC 2 cut(s) 638, 802
BanI GGYRCC 2 cut(s) 431, 1157
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 275, 361
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 520, 659, 926
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 3 cut(s) 248, 265, 643
BcnI CCSGG 1 cut(s) 1181
BcoDI GTCTC 1 cut(s) 86
BfrI CTTAAG 2 cut(s) 334, 1201
BisI GCNGC 6 cut(s) 15, 25, 42, 534, 648, 915
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 6 cut(s) 16, 26, 43, 535, 649, 916
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 4 cut(s) 248, 265, 643, 1181
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 2 cut(s) 325, 1098
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 5 cut(s) 301, 433, 640, 804, 1159
BmrFI CCNGG 4 cut(s) 248, 265, 643, 1181
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 52, 308
BmuI ACTGGG 1 cut(s) 774
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 275, 361
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 1181
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 1143
BsaJI CCNNGG 5 cut(s) 246, 303, 326, 447, 642
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 296, 428, 453, 963, 1203
Bse1I ACTGG 3 cut(s) 511, 544, 769
Bse21I CCTNAGG 2 cut(s) 126, 219
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 1143
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 3 cut(s) 248, 265, 643
BseDI CCNNGG 5 cut(s) 246, 303, 326, 447, 642
BseGI GGATG 5 cut(s) 214, 238, 323, 469, 840
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 6 cut(s) 197, 296, 428, 453, 963, 1203
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 4 cut(s) 210, 266, 389, 1162
BseNI ACTGG 3 cut(s) 511, 544, 769
BsePI GCGCGC 2 cut(s) 1187, 1189
BseSI GKGCMC 2 cut(s) 119, 434
BseXI GCAGC 3 cut(s) 520, 659, 926
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
BshNI GGYRCC 2 cut(s) 431, 1157
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 325, 1098
BsiSI CCGG 2 cut(s) 230, 1180
BsiWI CGTACG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 6 cut(s) 197, 296, 428, 453, 963, 1203
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 247, 833
BsoBI CYCGRG 2 cut(s) 325, 1098
Bsp1286I GDGCHC 2 cut(s) 119, 434
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 6 cut(s) 15, 25, 42, 417, 546, 789
BspCNI CTCAG 4 cut(s) 211, 265, 388, 1161
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
BspLI GGNNCC 5 cut(s) 301, 433, 640, 804, 1159
BspPI GGATC 8 cut(s) 82, 212, 221, 633, 646, 797, 810, 926
BspT107I GGYRCC 2 cut(s) 431, 1157
BspTI CTTAAG 2 cut(s) 334, 1201
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 3 cut(s) 511, 544, 769
BssECI CCNNGG 5 cut(s) 246, 303, 326, 447, 642
BssHII GCGCGC 2 cut(s) 1187, 1189
BssMI GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
BssT1I CCWWGG 2 cut(s) 303, 447
Bst2UI CCWGG 3 cut(s) 248, 265, 643
Bst4CI ACNGT 1 cut(s) 1012
Bst6I CTCTTC 2 cut(s) 71, 1056
BstAFI CTTAAG 2 cut(s) 334, 1201
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 1189, 1191
BstDEI CTNAG 5 cut(s) 126, 219, 252, 375, 1148
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 5 cut(s) 214, 238, 323, 469, 840
BstFNI CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
BstHHI GCGC 4 cut(s) 46, 1189, 1191, 1193
BstKTI GATC 8 cut(s) 90, 105, 207, 229, 391, 641, 805, 934
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
BstMWI GCNNNNNNNGC 2 cut(s) 14, 575
BstNI CCWGG 3 cut(s) 248, 265, 643
BstNSI RCATGY 1 cut(s) 1126
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 4 cut(s) 246, 263, 641, 1179
BstSLI GKGCMC 2 cut(s) 119, 434
BstUI CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
BstV1I GCAGC 3 cut(s) 520, 659, 926
BstV2I GAAGAC 2 cut(s) 275, 361
BstX2I RGATCY 2 cut(s) 638, 802
BstYI RGATCY 2 cut(s) 638, 802
Bsu36I CCTNAGG 2 cut(s) 126, 219
BtgI CCRYGG 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 846
BtsCI GGATG 5 cut(s) 214, 238, 323, 469, 840
BtsIMutI CAGTG 3 cut(s) 504, 762, 790
Cac8I GCNNGC 2 cut(s) 1189, 1191
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 4 cut(s) 46, 1189, 1191, 1193
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 2 cut(s) 344, 355
Csp6I GTAC 3 cut(s) 151, 469, 1090
CviQI GTAC 3 cut(s) 151, 469, 1090
DdeI CTNAG 5 cut(s) 126, 219, 252, 375, 1148
DpnI GATC 8 cut(s) 89, 104, 206, 228, 390, 640, 804, 933
DpnII GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
Eam1104I CTCTTC 2 cut(s) 71, 1056
EarI CTCTTC 2 cut(s) 71, 1056
EciI GGCGGA 1 cut(s) 804
Eco130I CCWWGG 2 cut(s) 303, 447
Eco32I GATATC 2 cut(s) 212, 733
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 79, 1067
Eco72I CACGTG 1 cut(s) 185
Eco81I CCTNAGG 2 cut(s) 126, 219
Eco88I CYCGRG 2 cut(s) 325, 1098
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 246, 263, 641
EcoRV GATATC 2 cut(s) 212, 733
EcoT14I CCWWGG 2 cut(s) 303, 447
ErhI CCWWGG 2 cut(s) 303, 447
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 558, 590
FaqI GGGAC 1 cut(s) 344
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 15, 25, 42, 534, 648, 915
FokI GGATG 5 cut(s) 201, 245, 330, 476, 827
Fsp4HI GCNGC 6 cut(s) 15, 25, 42, 534, 648, 915
GlaI GCGC 4 cut(s) 45, 1188, 1190, 1192
GluI GCNGC 6 cut(s) 15, 25, 42, 534, 648, 915
HapII CCGG 2 cut(s) 230, 1180
HgaI GACGC 2 cut(s) 344, 355
HhaI GCGC 4 cut(s) 46, 1189, 1191, 1193
Hin6I GCGC 4 cut(s) 44, 1187, 1189, 1191
HinP1I GCGC 4 cut(s) 44, 1187, 1189, 1191
HindIII AAGCTT 3 cut(s) 139, 567, 653
HinfI GANTC 6 cut(s) 57, 79, 159, 361, 769, 1096
HpaII CCGG 2 cut(s) 230, 1180
HphI GGTGA 2 cut(s) 483, 914
Hpy166II GTNNAC 3 cut(s) 117, 188, 1177
Hpy188III TCNNGA 5 cut(s) 85, 218, 230, 935, 1117
Hpy8I GTNNAC 3 cut(s) 117, 188, 1177
HpyAV CCTTC 4 cut(s) 103, 190, 855, 1171
HpyCH4III ACNGT 1 cut(s) 1012
HpyCH4IV ACGT 2 cut(s) 153, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 575
HpyF3I CTNAG 5 cut(s) 126, 219, 252, 375, 1148
HpySE526I ACGT 2 cut(s) 153, 184
HspAI GCGC 4 cut(s) 44, 1187, 1189, 1191
Kpn2I TCCGGA 1 cut(s) 229
Kzo9I GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
LmnI GCTCC 2 cut(s) 299, 352
Lsp1109I GCAGC 3 cut(s) 520, 659, 926
LweI GCATC 2 cut(s) 52, 308
MaeII ACGT 2 cut(s) 153, 184
MaeIII GTNAC 4 cut(s) 485, 502, 692, 1006
MalI GATC 8 cut(s) 89, 104, 206, 228, 390, 640, 804, 933
MboI GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
MboII GAAGA 5 cut(s) 79, 88, 280, 361, 1073
MflI RGATCY 2 cut(s) 638, 802
MhlI GDGCHC 2 cut(s) 119, 434
MluCI AATT 7 cut(s) 28, 120, 312, 399, 476, 778, 899
MlyI GAGTC 5 cut(s) 51, 88, 355, 778, 1090
MmeI TCCRAC 2 cut(s) 136, 330
MnlI CCTC 8 cut(s) 20, 194, 214, 321, 523, 904, 1051, 1080
MroI TCCGGA 1 cut(s) 229
MseI TTAA 5 cut(s) 335, 711, 747, 776, 1202
MslI CAYNNNNRTG 2 cut(s) 177, 408
MspA1I CMGCKG 2 cut(s) 256, 497
MspCI CTTAAG 2 cut(s) 334, 1201
MspI CCGG 2 cut(s) 230, 1180
MspR9I CCNGG 4 cut(s) 248, 265, 643, 1181
Mva1269I GAATGC 2 cut(s) 247, 833
MvaI CCWGG 3 cut(s) 248, 265, 643
MvnI CGCG 6 cut(s) 44, 46, 366, 546, 1189, 1191
MwoI GCNNNNNNNGC 2 cut(s) 14, 575
NciI CCSGG 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 292
NdeII GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
NlaIV GGNNCC 5 cut(s) 301, 433, 640, 804, 1159
NmuCI GTSAC 4 cut(s) 485, 502, 692, 1006
NspI RCATGY 1 cut(s) 1126
PauI GCGCGC 2 cut(s) 1187, 1189
PctI GAATGC 2 cut(s) 247, 833
PfeI GAWTC 1 cut(s) 159
Pfl23II CGTACG 1 cut(s) 150
PflMI CCANNNNNTGG 2 cut(s) 296, 453
PkrI GCNGC 6 cut(s) 16, 26, 43, 535, 649, 916
PleI GAGTC 5 cut(s) 51, 87, 355, 777, 1090
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 5 cut(s) 51, 87, 355, 777, 1090
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 365
Psp6I CCWGG 3 cut(s) 246, 263, 641
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 3 cut(s) 246, 263, 641
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 5 cut(s) 301, 433, 640, 804, 1159
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 2 cut(s) 638, 802
PteI GCGCGC 2 cut(s) 1187, 1189
PvuII CAGCTG 2 cut(s) 256, 497
RsaI GTAC 3 cut(s) 152, 470, 1091
RsaNI GTAC 3 cut(s) 151, 469, 1090
RseI CAYNNNNRTG 2 cut(s) 177, 408
SaqAI TTAA 5 cut(s) 335, 711, 747, 776, 1202
SatI GCNGC 6 cut(s) 15, 25, 42, 534, 648, 915
Sau3AI GATC 8 cut(s) 87, 102, 204, 226, 388, 638, 802, 931
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 5 cut(s) 51, 88, 355, 778, 1090
ScrFI CCNGG 4 cut(s) 248, 265, 643, 1181
SduI GDGCHC 2 cut(s) 119, 434
SfaNI GCATC 2 cut(s) 52, 308
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 177, 408
SmlI CTYRAG 2 cut(s) 334, 1201
SmoI CTYRAG 2 cut(s) 334, 1201
Sse9I AATT 7 cut(s) 28, 120, 312, 399, 476, 778, 899
SsiI CCGC 6 cut(s) 15, 25, 42, 417, 546, 789
StyD4I CCNGG 4 cut(s) 246, 263, 641, 1179
StyI CCWWGG 2 cut(s) 303, 447
TaaI ACNGT 1 cut(s) 1012
TaiI ACGT 2 cut(s) 156, 187
TaqI TCGA 1 cut(s) 60
TasI AATT 7 cut(s) 28, 120, 312, 399, 476, 778, 899
TatI WGTACW 1 cut(s) 468
TauI GCSGC 3 cut(s) 17, 27, 44
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 5 cut(s) 335, 711, 747, 776, 1202
Tru9I TTAA 5 cut(s) 335, 711, 747, 776, 1202
TscAI CASTG 3 cut(s) 511, 769, 790
TseFI GTSAC 4 cut(s) 485, 502, 692, 1006
TseI GCWGC 3 cut(s) 533, 647, 914
Tsp45I GTSAC 4 cut(s) 485, 502, 692, 1006
TspDTI ATGAA 8 cut(s) 17, 209, 249, 392, 470, 873, 892, 1097
TspRI CASTG 3 cut(s) 511, 769, 790
Van91I CCANNNNNTGG 2 cut(s) 296, 453
Vha464I CTTAAG 2 cut(s) 334, 1201
VneI GTGCAC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 4 cut(s) 399, 476, 778, 899
XceI RCATGY 1 cut(s) 1126
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.