Rroxscaffold_3G00252160

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
46215426 .. 46219142
3717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252160.1

Sequence Viewer

Length: 1236 bp
ATGAATGCTCTTGCAGCCACCAACCGGAATTTTCGCCATGCAGCTCGCATTCTTGGGCTGGATGAGAAGCTTGAGAAAAGTCTTTTAATTCCCTTCAGAGAGATCAAAGTTGAGTGTACTATTCCAAAAGATGATGGCAGTCTGGTTTCCTATGTGGGATTTAGAATCCAACATGACAATGCTCGTGGCCCAATGAAAGGAGGAATTCGTTACCATCCTGAGGTTGACCCGGATGAAGTGAATGCTCTAGCTCAACTAATGACATGGAAGACAGCTGTGGCAAATATTCCTTATGGGGGAGCTAAGGGTGGGATTGGCTGCAACCCCAGGGACCTGAGTATCAGCGAGTTAGAACGTTTGACTCGTGTTTTTACTCAGAGGATCCATGATCTCATCGGAATTCACAGGGATATTCCTGCCCCTGACATGGGAACAAATGCGCAGACAATGGCTTGGATTCTTGATGAGTACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGAAAACCTATTGATCTTGGGGGTTCACTTGGAAGGGAGTCTGCAACTGGACTTGGGGTGGTTTTTGCAACAGAAGCTGTACTTGCTGAGTATGGGAAGTCAATTTCTGGCTTGAAGTTTGTTATACAGGGCTTTGGAAATGTGGGCGCATGGGCAGCCAAGTTGATTCATGATAGAGGGGGTCATGTCATTGCTGTTAGTGACATCAGTGGTGCAATTAGGTGCACAAGTGGAATTGATATCCCAGCTCTACTGAAACACAAAGAGAGCAATGCAAATTTGAAGGAATTCCAAGGTGCAGAGGCTATGGACCCAAATGACTTGCTTCTTCATGAATGTGATGTTCTCATTCCATGTGCCTTAGGAGGGGTCATTAACAAGGATAATGCTGCTGATGTTAAGGCAAAGTTCATTATAGAGGCTGCAAACCACCCCACTGACCCTGAAGCTGATGAGATATTGTCCAAGAAGGGAGTTGTTATTCTCCCTGACATATATGCAAATGCTGGTGGTGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGCTTTATGTGGGAAGAAGAGAAAGTAAACTGTGAGCTTAAAAGGTACATGCAGAAAGCTTTCCTTGACATCAAGAGTATGTGTCAAACTCATGACTGCAACTTGCGAATGGGTGCTTTTACCCTTGGGGTGAACCGGGTTGCACGTGCTACCCTCTTGAGGGGCTGGGAAGCATGA

Protein Analysis

411

Amino Acids

44.81

Weight (kDa)

6.13

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELFV_dehydrog_N PF02812 33 - 159 6.3e-50 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog PF00208 176 - 408 2.1e-80 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc16I TGCGCA 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 502
AclI AACGTT 1 cut(s) 355
AclWI GGATC 2 cut(s) 376, 389
AcsI RAATTY 5 cut(s) 28, 204, 399, 784, 794
AcuI CTGAAG 2 cut(s) 79, 972
AcvI CACGTG 1 cut(s) 1205
AfaI GTAC 4 cut(s) 118, 470, 588, 1106
AfiI CCNNNNNNNGG 9 cut(s) 24, 197, 220, 296, 427, 428, 873, 1218, 1219
AgsI TTSAA 4 cut(s) 622, 790, 1040, 1058
AjnI CCWGG 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 734
Alw44I GTGCAC 1 cut(s) 730
AlwI GGATC 2 cut(s) 376, 389
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 730
ApeKI GCWGC 6 cut(s) 14, 41, 318, 662, 896, 929
ApoI RAATTY 5 cut(s) 28, 204, 399, 784, 794
Asp700I GAANNNNTTC 3 cut(s) 794, 1044, 1118
AspLEI GCGC 2 cut(s) 442, 656
AspS9I GGNCC 3 cut(s) 188, 331, 817
AsuC2I CCSGG 2 cut(s) 230, 1196
AsuHPI GGTGA 2 cut(s) 483, 1201
AvaII GGWCC 2 cut(s) 331, 817
AxyI CCTNAGG 2 cut(s) 219, 868
BaeGI GKGCMC 1 cut(s) 734
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BamHI GGATCC 1 cut(s) 381
BauI CACGAG 2 cut(s) 183, 363
BbrPI CACGTG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 6 cut(s) 26, 53, 305, 674, 883, 916
BccI CCATC 2 cut(s) 128, 222
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 2 cut(s) 230, 1196
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 6 cut(s) 15, 42, 319, 663, 897, 930
BlsI GCNGC 6 cut(s) 16, 43, 320, 664, 898, 931
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 230, 328, 1196
Bme18I GGWCC 2 cut(s) 331, 817
BmgT120I GGNCC 3 cut(s) 188, 331, 817
BmiI GGNNCC 3 cut(s) 332, 383, 819
BmrFI CCNGG 3 cut(s) 230, 328, 1196
BpiI GAAGAC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 230, 1196
BsaAI YACGTR 1 cut(s) 1205
BsaJI CCNNGG 4 cut(s) 326, 327, 799, 1183
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 9 cut(s) 24, 197, 220, 296, 427, 428, 873, 1218, 1219
Bse1I ACTGG 1 cut(s) 559
Bse21I CCTNAGG 2 cut(s) 219, 868
Bse3DI GCAATG 2 cut(s) 696, 784
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 4 cut(s) 326, 327, 799, 1183
BseGI GGATG 3 cut(s) 67, 214, 238
BseLI CCNNNNNNNGG 9 cut(s) 24, 197, 220, 296, 427, 428, 873, 1218, 1219
BseMI GCAATG 2 cut(s) 696, 784
BseMII CTCAG 4 cut(s) 210, 326, 389, 585
BseNI ACTGG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 6 cut(s) 26, 53, 305, 674, 883, 916
BseYI CCCAGC 2 cut(s) 751, 1224
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 734
BsiSI CCGG 3 cut(s) 25, 230, 1195
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 9 cut(s) 24, 197, 220, 296, 427, 428, 873, 1218, 1219
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 4 cut(s) 10, 48, 247, 487
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 4 cut(s) 102, 381, 388, 520
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 4 cut(s) 211, 327, 388, 586
BspHI TCATGA 3 cut(s) 676, 838, 1150
BspLI GGNNCC 3 cut(s) 332, 383, 819
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 376, 389
BsrDI GCAATG 2 cut(s) 696, 784
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 4 cut(s) 326, 327, 799, 1183
BssMI GATC 4 cut(s) 102, 381, 388, 520
BssSI CACGAG 2 cut(s) 183, 363
BssT1I CCWWGG 2 cut(s) 799, 1183
Bst2BI CACGAG 2 cut(s) 183, 363
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 1027, 1091
Bst6I CTCTTC 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 1205
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 6 cut(s) 219, 303, 335, 375, 594, 868
BstF5I GGATG 3 cut(s) 67, 214, 238
BstHHI GCGC 2 cut(s) 442, 656
BstKTI GATC 4 cut(s) 105, 384, 391, 523
BstMBI GATC 4 cut(s) 102, 381, 388, 520
BstMWI GCNNNNNNNGC 4 cut(s) 14, 581, 590, 662
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 3 cut(s) 228, 326, 1194
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 734
BstV1I GCAGC 6 cut(s) 26, 53, 305, 674, 883, 916
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
Bsu36I CCTNAGG 2 cut(s) 219, 868
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 67, 214, 238
BtsIMutI CAGTG 2 cut(s) 721, 942
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 3 cut(s) 676, 838, 1150
CfoI GCGC 2 cut(s) 442, 656
Cfr13I GGNCC 3 cut(s) 188, 331, 817
Csp6I GTAC 4 cut(s) 117, 469, 587, 1105
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviQI GTAC 4 cut(s) 117, 469, 587, 1105
DdeI CTNAG 6 cut(s) 219, 303, 335, 375, 594, 868
DpnI GATC 4 cut(s) 104, 383, 390, 522
DpnII GATC 4 cut(s) 102, 381, 388, 520
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Eco130I CCWWGG 2 cut(s) 799, 1183
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 331, 817
Eco57I CTGAAG 2 cut(s) 79, 972
Eco72I CACGTG 1 cut(s) 1205
Eco81I CCTNAGG 2 cut(s) 219, 868
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 3 cut(s) 204, 399, 794
EcoRII CCWGG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 799, 1183
ErhI CCWWGG 2 cut(s) 799, 1183
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 1107, 1139
FaqI GGGAC 1 cut(s) 344
Fnu4HI GCNGC 6 cut(s) 15, 42, 319, 663, 897, 930
FokI GGATG 3 cut(s) 74, 201, 245
Fsp4HI GCNGC 6 cut(s) 15, 42, 319, 663, 897, 930
FspBI CTAG 1 cut(s) 248
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 2 cut(s) 441, 655
GluI GCNGC 6 cut(s) 15, 42, 319, 663, 897, 930
GsaI CCCAGC 2 cut(s) 755, 1228
HaeIII GGCC 1 cut(s) 189
HapII CCGG 3 cut(s) 25, 230, 1195
HhaI GCGC 2 cut(s) 442, 656
Hin6I GCGC 2 cut(s) 440, 654
HinP1I GCGC 2 cut(s) 440, 654
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 2 cut(s) 68, 1116
HinfI GANTC 5 cut(s) 165, 361, 457, 545, 673
HpaII CCGG 3 cut(s) 25, 230, 1195
HphI GGTGA 2 cut(s) 483, 1201
Hpy166II GTNNAC 6 cut(s) 117, 226, 533, 732, 1087, 1192
Hpy188I TCNGA 4 cut(s) 98, 378, 398, 1050
Hpy188III TCNNGA 7 cut(s) 218, 461, 677, 839, 1132, 1151, 1216
Hpy8I GTNNAC 6 cut(s) 117, 226, 533, 732, 1087, 1192
HpyAV CCTTC 4 cut(s) 103, 534, 784, 970
HpyCH4III ACNGT 2 cut(s) 1027, 1091
HpyCH4IV ACGT 2 cut(s) 355, 1204
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 581, 590, 662
HpyF3I CTNAG 6 cut(s) 219, 303, 335, 375, 594, 868
HpySE526I ACGT 2 cut(s) 355, 1204
HspAI GCGC 2 cut(s) 440, 654
Kzo9I GATC 4 cut(s) 102, 381, 388, 520
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 6 cut(s) 26, 53, 305, 674, 883, 916
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 355, 1204
MaeIII GTNAC 4 cut(s) 209, 502, 707, 1021
MalI GATC 4 cut(s) 104, 383, 390, 522
MboI GATC 4 cut(s) 102, 381, 388, 520
MboII GAAGA 4 cut(s) 280, 827, 1085, 1088
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 9 cut(s) 28, 87, 204, 399, 609, 723, 741, 784, 794
MlyI GAGTC 2 cut(s) 355, 554
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 9 cut(s) 194, 214, 372, 677, 802, 866, 919, 1212, 1223
MroXI GAANNNNTTC 3 cut(s) 794, 1044, 1118
MseI TTAA 4 cut(s) 86, 882, 906, 1098
MslI CAYNNNNRTG 2 cut(s) 177, 843
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 25, 230, 1195
MspR9I CCNGG 3 cut(s) 230, 328, 1196
Mva1269I GAATGC 4 cut(s) 10, 48, 247, 487
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 4 cut(s) 14, 581, 590, 662
NciI CCSGG 2 cut(s) 230, 1196
NdeII GATC 4 cut(s) 102, 381, 388, 520
NlaIV GGNNCC 3 cut(s) 332, 383, 819
NmuCI GTSAC 3 cut(s) 502, 707, 1021
NsbI TGCGCA 1 cut(s) 441
NspI RCATGY 1 cut(s) 1111
PagI TCATGA 3 cut(s) 676, 838, 1150
PaqCI CACCTGC 1 cut(s) 502
PasI CCCWGGG 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PctI GAATGC 4 cut(s) 10, 48, 247, 487
PdmI GAANNNNTTC 3 cut(s) 794, 1044, 1118
PfeI GAWTC 3 cut(s) 165, 457, 673
PkrI GCNGC 6 cut(s) 16, 43, 320, 664, 898, 931
PleI GAGTC 2 cut(s) 355, 553
PmaCI CACGTG 1 cut(s) 1205
PmlI CACGTG 1 cut(s) 1205
PpsI GAGTC 2 cut(s) 355, 553
Ppu21I YACGTR 1 cut(s) 1205
PpuMI RGGWCCY 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 326
PspCI CACGTG 1 cut(s) 1205
PspFI CCCAGC 2 cut(s) 751, 1224
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 332, 383, 819
PspPI GGNCC 3 cut(s) 188, 331, 817
PspPPI RGGWCCY 1 cut(s) 331
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 4 cut(s) 118, 470, 588, 1106
RsaNI GTAC 4 cut(s) 117, 469, 587, 1105
RseI CAYNNNNRTG 2 cut(s) 177, 843
SaqAI TTAA 4 cut(s) 86, 882, 906, 1098
SatI GCNGC 6 cut(s) 15, 42, 319, 663, 897, 930
Sau3AI GATC 4 cut(s) 102, 381, 388, 520
Sau96I GGNCC 3 cut(s) 188, 331, 817
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 2 cut(s) 355, 554
ScrFI CCNGG 3 cut(s) 230, 328, 1196
SduI GDGCHC 1 cut(s) 734
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 2 cut(s) 331, 817
SmiMI CAYNNNNRTG 2 cut(s) 177, 843
SmlI CTYRAG 2 cut(s) 71, 1216
SmoI CTYRAG 2 cut(s) 71, 1216
Sse9I AATT 9 cut(s) 28, 87, 204, 399, 609, 723, 741, 784, 794
SspI AATATT 2 cut(s) 286, 1054
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 3 cut(s) 228, 326, 1194
StyI CCWWGG 2 cut(s) 799, 1183
TaaI ACNGT 2 cut(s) 1027, 1091
TaiI ACGT 2 cut(s) 358, 1207
TasI AATT 9 cut(s) 28, 87, 204, 399, 609, 723, 741, 784, 794
TatI WGTACW 3 cut(s) 116, 468, 586
TfiI GAWTC 3 cut(s) 165, 457, 673
Tru1I TTAA 4 cut(s) 86, 882, 906, 1098
Tru9I TTAA 4 cut(s) 86, 882, 906, 1098
TscAI CASTG 2 cut(s) 721, 949
TseFI GTSAC 3 cut(s) 502, 707, 1021
TseI GCWGC 6 cut(s) 14, 41, 318, 662, 896, 929
Tsp45I GTSAC 3 cut(s) 502, 707, 1021
TspDTI ATGAA 8 cut(s) 17, 209, 249, 470, 665, 827, 855, 907
TspRI CASTG 2 cut(s) 721, 949
VneI GTGCAC 1 cut(s) 730
VpaK11BI GGWCC 2 cut(s) 331, 817
XapI RAATTY 5 cut(s) 28, 204, 399, 784, 794
XceI RCATGY 1 cut(s) 1111
XmnI GAANNNNTTC 3 cut(s) 794, 1044, 1118
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.