Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002569

Physical Location & Seq

Genomic Coordinates Forward (+)

61908772 .. 61912194

Gene Structure 3423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAACGCCCTCGCCGCAACAAGCCGTAACTTCAAGAACGCGGCACGACTTCTTGGGCTGGATGCTAAGATTGAGAAGAGTCTTTTGATCCCCTTCAGGGAGATCAAGGTGGAGTGCACGATTCCTAAGGATGATGGGACCTTGGTTTCGTACGTTGGATTTAGGGTGCAGCATGATAATGCACGTGGGCCCATGAAGGGAGGGATCAGATATCATCCTGAGGTTGATCCAGATGAAGTAAATGCCCTGGCTCAACTTATGACATGGAAGACTGCTGTGGCAGACATTCCATATGGTGGAGCAAAGGGTGGAATTGGATGCACCCCAAGGGAGTTGAGTAAGAGTGAGTTGGAGCGCCTGACTCGTGTCTTCACTCAGAAAATCCATGATCTCATTGGAATTCACACTGATGTTCCTGCACCTGATATGGGCACCAACGCTCAAACTATGGCATGGATTTTAGATGAGTACTCCAAATTTCATGGTCACTCACCAGCTGTTGTCACTGGAAAACCAATTGATCTTGGAGGATCTCTAGGTAGGGAGGCCGCAACTGGACGCGGTGTTGTTTTTGGAACAGAAGCTTTGCTAGCAGAACATGGGAAGTCAGTGAAAGGCTTGACTTTTGTTATTCAGGGTTTTGGAAATGTGGGATCCTGGGCAGCAAGGCTCTTGCATGAGAGAGGCGGGAAGGTTATTGCTGTTAGTGACATCACTGGTGCAGTTACTAACCCCAATGGACTAGATATCCCTGCGTTGGTTAAGCATAAAGAGGACACTGGGAGTTTGTTAAACTTCAGTGGTGGAGATATGATGAACCCTACTGAACTGCTTACAAAGGAATGTGATGTCCTTATCCCTTCTGCTCTGGGTGGGGTTCTGAACAGGTCTGAGCTTTTCCAAACTCACTGCTTTCATCGTTGTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

310

Amino Acids

33.3

Weight (kDa)

6.83

Isoelectric Point (pI)

18.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 159	1.2e-50	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	176 - 298	7.6e-35	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07440 AT5G07440 AT5G07440
fragaria_vesca	FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_7g26540 FvH4_7g26540
malus_domestica	MD01G1174400.v1.1 MD04G1055700.v1.1 MD07G1241100.v1.1
prunus_persica	Prupe.2G269800_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1
pyrus_communis	pycom01g18610 pycom04g04900 pycom07g21730
rosa_chinensis	RchiOBHm_Chr1g0373211 RchiOBHm_Chr7g0205521
rosa_laevigata	RLG00000003372 RLG00000026843
rosa_multiflora	Rmu_sc0000170.1_g000011 Rmu_sc0002237.1_g000014
rosa_roxburghii	Rroxscaffold_3G00252160 Rroxscaffold_4G00284390
rosa_rugosa	Rorug01G0376700 Rorug07G0092000
rosa_samantha	Rh1AG385300 Rh1BG349300 Rh1CG362600 Rh1DG380200 Rh7AG222500 Rh7BG217900 Rh7CG234900 Rh7DG228900
rosa_wichuraiana	Rw1G033990 Rw7G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccII	CGCG	2 cut(s)	41, 561
AciI	CCGC	5 cut(s)	15, 41, 549, 561, 687
AclWI	GGATC	6 cut(s)	82, 212, 221, 538, 648, 661
AcsI	RAATTY	2 cut(s)	399, 476
AcuI	CTGAAG	2 cut(s)	79, 781
AcvI	CACGTG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	152, 470
AfiI	CCNNNNNNNGG	5 cut(s)	97, 197, 296, 428, 757
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	246, 656
AluBI	AGCT	3 cut(s)	497, 584, 895
AluI	AGCT	3 cut(s)	497, 584, 895
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	929
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	6 cut(s)	82, 212, 221, 538, 648, 661
AoxI	GGCC	2 cut(s)	188, 546
ApaI	GGGCCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	169, 662
ApoI	RAATTY	2 cut(s)	399, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	3 cut(s)	138, 188, 189
AsuHPI	GGTGA	1 cut(s)	483
AsuNHI	GCTAGC	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	2 cut(s)	126, 219
BaeGI	GKGCMC	3 cut(s)	119, 192, 434
BamHI	GGATCC	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	275, 361
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	181, 674
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	248, 658
BcoDI	GTCTC	1 cut(s)	929
BfaI	CTAG	3 cut(s)	536, 590, 743
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	5 cut(s)	15, 42, 170, 549, 663
BlsI	GCNGC	5 cut(s)	16, 43, 171, 550, 664
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	248, 658
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	138, 188, 189
BmiI	GGNNCC	4 cut(s)	139, 190, 433, 655
BmrFI	CCNGG	2 cut(s)	248, 658
BmrI	ACTGGG	1 cut(s)	789
BmsI	GCATC	2 cut(s)	52, 308
BmtI	GCTAGC	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	789
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	275, 361
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	141, 246, 326, 657
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 197, 296, 428, 757
Bse1I	ACTGG	4 cut(s)	511, 559, 721, 784
Bse21I	CCTNAGG	2 cut(s)	126, 219
BseBI	CCWGG	2 cut(s)	248, 658
BseDI	CCNNGG	4 cut(s)	141, 246, 326, 657
BseGI	GGATG	4 cut(s)	67, 136, 214, 323
BseLI	CCNNNNNNNGG	5 cut(s)	97, 197, 296, 428, 757
BseMII	CTCAG	3 cut(s)	210, 389, 882
BseNI	ACTGG	4 cut(s)	511, 559, 721, 784
BseSI	GKGCMC	3 cut(s)	119, 192, 434
BseXI	GCAGC	2 cut(s)	181, 674
BsgI	GTGCAG	3 cut(s)	188, 402, 741
Bsh1236I	CGCG	2 cut(s)	41, 561
BshFI	GGCC	2 cut(s)	190, 548
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	119
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	5 cut(s)	97, 197, 296, 428, 757
BsmAI	GTCTC	1 cut(s)	929
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	190, 548
Bsp120I	GGGCCC	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	119, 192, 434
Bsp143I	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
BspACI	CCGC	5 cut(s)	15, 41, 549, 561, 687
BspANI	GGCC	2 cut(s)	190, 548
BspCNI	CTCAG	3 cut(s)	211, 388, 883
BspFNI	CGCG	2 cut(s)	41, 561
BspLI	GGNNCC	4 cut(s)	139, 190, 433, 655
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	6 cut(s)	82, 212, 221, 538, 648, 661
BspT107I	GGYRCC	1 cut(s)	431
BsrI	ACTGG	4 cut(s)	511, 559, 721, 784
BssECI	CCNNGG	4 cut(s)	141, 246, 326, 657
BssMI	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	141, 326
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	248, 658
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	5 cut(s)	66, 126, 219, 375, 891
BstF5I	GGATG	4 cut(s)	67, 136, 214, 323
BstFNI	CGCG	2 cut(s)	41, 561
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	8 cut(s)	90, 105, 207, 229, 391, 523, 533, 656
BstMAI	GTCTC	1 cut(s)	929
BstMBI	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 590
BstNI	CCWGG	2 cut(s)	248, 658
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	246, 656
BstSLI	GKGCMC	3 cut(s)	119, 192, 434
BstUI	CGCG	2 cut(s)	41, 561
BstV1I	GCAGC	2 cut(s)	181, 674
BstV2I	GAAGAC	2 cut(s)	275, 361
BstX2I	RGATCY	2 cut(s)	530, 653
BstYI	RGATCY	2 cut(s)	530, 653
Bsu36I	CCTNAGG	2 cut(s)	126, 219
BsuRI	GGCC	2 cut(s)	190, 548
BtsCI	GGATG	4 cut(s)	67, 136, 214, 323
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	7 cut(s)	405, 504, 615, 714, 777, 805, 907
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	138, 188, 189
CseI	GACGC	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	151, 469
CviAII	CATG	8 cut(s)	173, 193, 264, 386, 453, 482, 599, 677
CviQI	GTAC	2 cut(s)	151, 469
DdeI	CTNAG	5 cut(s)	66, 126, 219, 375, 891
DpnI	GATC	8 cut(s)	89, 104, 206, 228, 390, 522, 532, 655
DpnII	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	141, 326
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	2 cut(s)	212, 748
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	79, 781
Eco72I	CACGTG	1 cut(s)	185
Eco81I	CCTNAGG	2 cut(s)	126, 219
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	246, 656
EcoRV	GATATC	2 cut(s)	212, 748
EcoT14I	CCWWGG	2 cut(s)	141, 326
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	141, 326
FaeI	CATG	8 cut(s)	176, 196, 267, 389, 456, 485, 602, 680
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	8 cut(s)	172, 192, 263, 385, 452, 481, 598, 676
FauI	CCCGC	1 cut(s)	680
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	15, 42, 170, 549, 663
FokI	GGATG	4 cut(s)	74, 143, 201, 330
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	5 cut(s)	15, 42, 170, 549, 663
FspBI	CTAG	3 cut(s)	536, 590, 743
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	5 cut(s)	15, 42, 170, 549, 663
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	190, 548
HgaI	GACGC	1 cut(s)	567
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	8 cut(s)	176, 196, 267, 389, 456, 485, 602, 680
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	79, 121, 361
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	4 cut(s)	209, 378, 882, 892
Hpy188III	TCNNGA	3 cut(s)	34, 218, 230
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	4 cut(s)	103, 190, 685, 870
HpyCH4IV	ACGT	2 cut(s)	153, 184
HpyCH4V	TGCA	7 cut(s)	117, 169, 182, 321, 419, 676, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 590
HpyF3I	CTNAG	5 cut(s)	66, 126, 219, 375, 891
HpySE526I	ACGT	2 cut(s)	153, 184
Hsp92II	CATG	8 cut(s)	176, 196, 267, 389, 456, 485, 602, 680
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
LmnI	GCTCC	2 cut(s)	299, 352
Lsp1109I	GCAGC	2 cut(s)	181, 674
LweI	GCATC	2 cut(s)	52, 308
MaeI	CTAG	3 cut(s)	536, 590, 743
MaeII	ACGT	2 cut(s)	153, 184
MaeIII	GTNAC	5 cut(s)	26, 485, 502, 707, 724
MalI	GATC	8 cut(s)	89, 104, 206, 228, 390, 522, 532, 655
MboI	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
MboII	GAAGA	3 cut(s)	88, 280, 361
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	2 cut(s)	530, 653
MhlI	GDGCHC	3 cut(s)	119, 192, 434
MluCI	AATT	4 cut(s)	312, 399, 476, 516
MlyI	GAGTC	2 cut(s)	88, 355
MmeI	TCCRAC	2 cut(s)	136, 330
MnlI	CCTC	7 cut(s)	20, 194, 214, 521, 538, 677, 766
MseI	TTAA	2 cut(s)	762, 791
MslI	CAYNNNNRTG	2 cut(s)	177, 408
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	248, 658
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	248, 658
MvnI	CGCG	2 cut(s)	41, 561
MwoI	GCNNNNNNNGC	2 cut(s)	14, 590
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	8 cut(s)	176, 196, 267, 389, 456, 485, 602, 680
NlaIV	GGNNCC	4 cut(s)	139, 190, 433, 655
NmuCI	GTSAC	3 cut(s)	485, 502, 707
PfeI	GAWTC	1 cut(s)	121
Pfl23II	CGTACG	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	16, 43, 171, 550, 664
PleI	GAGTC	2 cut(s)	87, 355
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	2 cut(s)	87, 355
Ppu21I	YACGTR	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	138
PshAI	GACNNNNGTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	246, 656
PspCI	CACGTG	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	246, 656
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	139, 190, 433, 655
PspOMI	GGGCCC	1 cut(s)	188
PspPI	GGNCC	3 cut(s)	138, 188, 189
PspPPI	RGGWCCY	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	530, 653
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	152, 470
RsaNI	GTAC	2 cut(s)	151, 469
RseI	CAYNNNNRTG	2 cut(s)	177, 408
SaqAI	TTAA	2 cut(s)	762, 791
SatI	GCNGC	5 cut(s)	15, 42, 170, 549, 663
Sau3AI	GATC	8 cut(s)	87, 102, 204, 226, 388, 520, 530, 653
Sau96I	GGNCC	3 cut(s)	138, 188, 189
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	2 cut(s)	88, 355
ScrFI	CCNGG	2 cut(s)	248, 658
SduI	GDGCHC	3 cut(s)	119, 192, 434
SfaNI	GCATC	2 cut(s)	52, 308
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	177, 408
Sse9I	AATT	4 cut(s)	312, 399, 476, 516
SsiI	CCGC	5 cut(s)	15, 41, 549, 561, 687
SspMI	CTAG	3 cut(s)	536, 590, 743
StyD4I	CCNGG	2 cut(s)	246, 656
StyI	CCWWGG	2 cut(s)	141, 326
TaiI	ACGT	2 cut(s)	156, 187
TasI	AATT	4 cut(s)	312, 399, 476, 516
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	3 cut(s)	17, 44, 551
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	762, 791
Tru9I	TTAA	2 cut(s)	762, 791
TscAI	CASTG	7 cut(s)	412, 511, 615, 721, 784, 805, 914
TseFI	GTSAC	3 cut(s)	485, 502, 707
TseI	GCWGC	2 cut(s)	169, 662
Tsp45I	GTSAC	3 cut(s)	485, 502, 707
TspDTI	ATGAA	6 cut(s)	17, 209, 249, 470, 830, 905
TspRI	CASTG	7 cut(s)	412, 511, 615, 721, 784, 805, 914
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	399, 476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	3 cut(s)	536, 590, 743
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.