RchiOBHm_Chr1g0373211

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
61567736 .. 61571257
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59711

Sequence Viewer

Length: 1236 bp
ATGAACGCCCTCGCCGCAACAAGCCGTAACTTCAAGAACGCCGCACGACTTCTTGGGCTGGATGCTAAGATTGAGAAGAGTCTTTTGATCCCCTTCAGGGAGATCAAGGTGGAGTGCACGATTCCCAAGGATGATGGAACCTTGGTTTCGTACGTTGGATTTAGGGTGCAGCATGATAATGCACGTGGGCCCATGAAGGGAGGGATCAGATATCATCCTGAGGTTGATCCAGATGAAGTAAATGCCCTGGCTCAACTTATGACATGGAAGACTGCTGTGGCAGACATTCCATATGGTGGAGCAAAGGGTGGAATTGGATGCACCCCAAGGGAGTTGAGTAAGAGTGAGTTGGAGCGCCTGACTCGTGTCTTCACTCAGAAAATCCATGATCTCATTGGAATTCACACTGATGTTCCTGCACCTGATATGGGCACCAACGCTCAAACTATGGCATGGATTTTAGATGAGTACTCCAAATTTCATGGTCACTCACCAGCTGTTGTCACTGGAAAACCAATTGATCTTGGAGGATCTCTAGGTAGGGAGGCCGCAACTGGACGCGGTGTTGTTTTTGGAACAGAAGCTTTGCTAGCAGAACATGGGAAGTCAGTGAAAGGCTTGACTTTTGTTATTCAGGGTTTTGGAAATGTGGGATCCTGGGCAGCAAGGCTCTTGCATGAGAGAGGCGGGAAGGTTATTGCTGTTAGTGACATCACTGGTGCAGTTACTAACCCCAATGGATTAGATATCCCTGCGTTGGTTAAGCATAAAGAGGACACTGGGAGTTTGTTAAACTTCAGTGGTGGAGATATGATGAACCCTACTGAACTGCTTACAAAGGAATGTGATGTCCTTATCCCTTCTGCTCTGGGTGGGGTTCTGAACAGGGATAATGCTTCATCAGTGAGAGCCAAGTTCATAGTTGAGGCAGCAAATCATCCTACTGATCCTGAAGCAGATGAGATTTTATCTAAGAAAGGAGTCATCATTCTCCCAGATATATATGCAAATGCTGGTGGTGTGACTGTCAGCTACTTTGAGTGGGTTCAGAATATTCAAGGTTTCATGTGGGAAGAAGAGAAGGTGAATAACGAGCTTCAGAGGTACATGACTCGGGCCTTCCATAACATCAAGAACATGTGCAAGACTCATGATTGTAATCTCAGAATGGGTGCCTTCACATTGGGTGTAAACCGGGTAGCCCGCGCAACTCTCTTGAGGGGTTGGGAAGCATGA

Protein Analysis

411

Amino Acids

44.61

Weight (kDa)

6.65

Isoelectric Point (pI)

22.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELFV_dehydrog_N PF02812 33 - 159 2.2e-50 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog PF00208 176 - 408 4e-82 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 431, 1172
AccB7I CCANNNNNTGG 1 cut(s) 296
AccII CGCG 2 cut(s) 561, 1206
AciI CCGC 6 cut(s) 15, 42, 549, 561, 687, 1204
AclWI GGATC 7 cut(s) 82, 212, 221, 538, 648, 661, 941
AcsI RAATTY 2 cut(s) 399, 476
AcuI CTGAAG 4 cut(s) 79, 781, 972, 1082
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 3 cut(s) 152, 470, 1106
AfiI CCNNNNNNNGG 5 cut(s) 97, 197, 296, 428, 757
AflIII ACRYGT 1 cut(s) 1137
AgsI TTSAA 2 cut(s) 34, 1058
AjnI CCWGG 2 cut(s) 246, 656
AluBI AGCT 4 cut(s) 497, 584, 1032, 1096
AluI AGCT 4 cut(s) 497, 584, 1032, 1096
Alw21I GWGCWC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 7 cut(s) 82, 212, 221, 538, 648, 661, 941
Ama87I CYCGRG 1 cut(s) 1113
AoxI GGCC 3 cut(s) 188, 546, 1116
ApaI GGGCCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 169, 662, 929
ApoI RAATTY 2 cut(s) 399, 476
AspLEI GCGC 2 cut(s) 357, 1208
AspS9I GGNCC 3 cut(s) 188, 189, 1116
AsuC2I CCSGG 1 cut(s) 1196
AsuHPI GGTGA 2 cut(s) 483, 1096
AsuNHI GCTAGC 1 cut(s) 589
AvaI CYCGRG 1 cut(s) 1113
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 3 cut(s) 119, 192, 434
BamHI GGATCC 1 cut(s) 653
BanI GGYRCC 2 cut(s) 431, 1172
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 275, 361
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 181, 674, 941
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 248, 658
BcnI CCSGG 1 cut(s) 1196
BfaI CTAG 2 cut(s) 536, 590
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 6 cut(s) 15, 42, 170, 549, 663, 930
BlsI GCNGC 6 cut(s) 16, 43, 171, 550, 664, 931
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 248, 658, 1196
BmeT110I CYCGRG 1 cut(s) 1113
BmgT120I GGNCC 3 cut(s) 188, 189, 1116
BmiI GGNNCC 5 cut(s) 139, 190, 433, 655, 1174
BmrFI CCNGG 3 cut(s) 248, 658, 1196
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 2 cut(s) 52, 308
BmtI GCTAGC 1 cut(s) 593
BmuI ACTGGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 275, 361
BpuMI CCSGG 1 cut(s) 1196
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 1158
BsaJI CCNNGG 5 cut(s) 126, 141, 246, 326, 657
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 197, 296, 428, 757
Bse1I ACTGG 4 cut(s) 511, 559, 721, 784
Bse21I CCTNAGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 2 cut(s) 248, 658
BseDI CCNNGG 5 cut(s) 126, 141, 246, 326, 657
BseGI GGATG 5 cut(s) 67, 136, 214, 323, 937
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 5 cut(s) 97, 197, 296, 428, 757
BseMII CTCAG 3 cut(s) 210, 389, 1177
BseNI ACTGG 4 cut(s) 511, 559, 721, 784
BseSI GKGCMC 3 cut(s) 119, 192, 434
BseXI GCAGC 3 cut(s) 181, 674, 941
BsgI GTGCAG 3 cut(s) 188, 402, 741
Bsh1236I CGCG 2 cut(s) 561, 1206
BshFI GGCC 3 cut(s) 190, 548, 1118
BshNI GGYRCC 2 cut(s) 431, 1172
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 1113
BsiSI CCGG 1 cut(s) 1195
BsiWI CGTACG 1 cut(s) 150
BslI CCNNNNNNNGG 5 cut(s) 97, 197, 296, 428, 757
BsnI GGCC 3 cut(s) 190, 548, 1118
BsoBI CYCGRG 1 cut(s) 1113
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 119, 192, 434
Bsp143I GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
BspACI CCGC 6 cut(s) 15, 42, 549, 561, 687, 1204
BspANI GGCC 3 cut(s) 190, 548, 1118
BspCNI CTCAG 3 cut(s) 211, 388, 1176
BspFNI CGCG 2 cut(s) 561, 1206
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 5 cut(s) 139, 190, 433, 655, 1174
BspOI GCTAGC 1 cut(s) 593
BspPI GGATC 7 cut(s) 82, 212, 221, 538, 648, 661, 941
BspT107I GGYRCC 2 cut(s) 431, 1172
BsrI ACTGG 4 cut(s) 511, 559, 721, 784
BssECI CCNNGG 5 cut(s) 126, 141, 246, 326, 657
BssMI GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 3 cut(s) 126, 141, 326
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 248, 658
Bst4CI ACNGT 1 cut(s) 1027
Bst6I CTCTTC 2 cut(s) 71, 1071
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 591, 1204
BstDEI CTNAG 5 cut(s) 66, 219, 375, 972, 1163
BstF5I GGATG 5 cut(s) 67, 136, 214, 323, 937
BstFNI CGCG 2 cut(s) 561, 1206
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 2 cut(s) 357, 1208
BstKTI GATC 9 cut(s) 90, 105, 207, 229, 391, 523, 533, 656, 949
BstMBI GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
BstMWI GCNNNNNNNGC 2 cut(s) 14, 590
BstNI CCWGG 2 cut(s) 248, 658
BstNSI RCATGY 1 cut(s) 1141
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 246, 656, 1194
BstSLI GKGCMC 3 cut(s) 119, 192, 434
BstUI CGCG 2 cut(s) 561, 1206
BstV1I GCAGC 3 cut(s) 181, 674, 941
BstV2I GAAGAC 2 cut(s) 275, 361
BstX2I RGATCY 2 cut(s) 530, 653
BstYI RGATCY 2 cut(s) 530, 653
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 190, 548, 1118
BtsCI GGATG 5 cut(s) 67, 136, 214, 323, 937
BtsIMutI CAGTG 7 cut(s) 405, 504, 615, 714, 777, 805, 909
Cac8I GCNNGC 2 cut(s) 591, 1204
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 2 cut(s) 357, 1208
Cfr13I GGNCC 3 cut(s) 188, 189, 1116
CseI GACGC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 151, 469, 1105
CviQI GTAC 3 cut(s) 151, 469, 1105
DdeI CTNAG 5 cut(s) 66, 219, 375, 972, 1163
DpnI GATC 9 cut(s) 89, 104, 206, 228, 390, 522, 532, 655, 948
DpnII GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
Eam1104I CTCTTC 2 cut(s) 71, 1071
EarI CTCTTC 2 cut(s) 71, 1071
Eco130I CCWWGG 3 cut(s) 126, 141, 326
Eco24I GRGCYC 1 cut(s) 192
Eco32I GATATC 2 cut(s) 212, 748
Eco57I CTGAAG 4 cut(s) 79, 781, 972, 1082
Eco72I CACGTG 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 1113
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 246, 656
EcoRV GATATC 2 cut(s) 212, 748
EcoT14I CCWWGG 3 cut(s) 126, 141, 326
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 126, 141, 326
FauI CCCGC 2 cut(s) 680, 1211
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 15, 42, 170, 549, 663, 930
FokI GGATG 5 cut(s) 74, 143, 201, 330, 924
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 6 cut(s) 15, 42, 170, 549, 663, 930
FspBI CTAG 2 cut(s) 536, 590
GlaI GCGC 2 cut(s) 356, 1207
GluI GCNGC 6 cut(s) 15, 42, 170, 549, 663, 930
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 3 cut(s) 190, 548, 1118
HapII CCGG 1 cut(s) 1195
HgaI GACGC 1 cut(s) 567
HhaI GCGC 2 cut(s) 357, 1208
Hin6I GCGC 2 cut(s) 355, 1206
HinP1I GCGC 2 cut(s) 355, 1206
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 6 cut(s) 79, 121, 361, 981, 1111, 1147
HpaII CCGG 1 cut(s) 1195
HphI GGTGA 2 cut(s) 483, 1096
Hpy166II GTNNAC 2 cut(s) 117, 1192
Hpy188I TCNGA 6 cut(s) 209, 378, 882, 1050, 1101, 1166
Hpy188III TCNNGA 7 cut(s) 34, 218, 230, 950, 1132, 1151, 1216
Hpy8I GTNNAC 2 cut(s) 117, 1192
HpyAV CCTTC 7 cut(s) 103, 190, 685, 870, 1075, 1129, 1186
HpyCH4III ACNGT 1 cut(s) 1027
HpyCH4IV ACGT 2 cut(s) 153, 184
HpyCH4V TGCA 9 cut(s) 117, 169, 182, 321, 419, 676, 722, 1007, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 590
HpyF3I CTNAG 5 cut(s) 66, 219, 375, 972, 1163
HpySE526I ACGT 2 cut(s) 153, 184
HspAI GCGC 2 cut(s) 355, 1206
Kzo9I GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
LmnI GCTCC 2 cut(s) 299, 352
Lsp1109I GCAGC 3 cut(s) 181, 674, 941
LweI GCATC 2 cut(s) 52, 308
MaeI CTAG 2 cut(s) 536, 590
MaeII ACGT 2 cut(s) 153, 184
MaeIII GTNAC 6 cut(s) 26, 485, 502, 707, 724, 1021
MalI GATC 9 cut(s) 89, 104, 206, 228, 390, 522, 532, 655, 948
MboI GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
MboII GAAGA 5 cut(s) 88, 280, 361, 1085, 1088
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 2 cut(s) 530, 653
MhlI GDGCHC 3 cut(s) 119, 192, 434
MluCI AATT 4 cut(s) 312, 399, 476, 516
MlyI GAGTC 5 cut(s) 88, 355, 990, 1105, 1141
MmeI TCCRAC 2 cut(s) 136, 330
MseI TTAA 2 cut(s) 762, 791
MslI CAYNNNNRTG 2 cut(s) 177, 408
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 1195
MspR9I CCNGG 3 cut(s) 248, 658, 1196
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 2 cut(s) 248, 658
MvnI CGCG 2 cut(s) 561, 1206
MwoI GCNNNNNNNGC 2 cut(s) 14, 590
NciI CCSGG 1 cut(s) 1196
NdeI CATATG 1 cut(s) 292
NdeII GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
NheI GCTAGC 1 cut(s) 589
NlaIV GGNNCC 5 cut(s) 139, 190, 433, 655, 1174
NmuCI GTSAC 4 cut(s) 485, 502, 707, 1021
NspI RCATGY 1 cut(s) 1141
PagI TCATGA 1 cut(s) 1150
PciI ACATGT 1 cut(s) 1137
PfeI GAWTC 1 cut(s) 121
Pfl23II CGTACG 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 6 cut(s) 16, 43, 171, 550, 664, 931
PleI GAGTC 5 cut(s) 87, 355, 989, 1105, 1141
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 5 cut(s) 87, 355, 989, 1105, 1141
Ppu21I YACGTR 1 cut(s) 185
PscI ACATGT 1 cut(s) 1137
PshAI GACNNNNGTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 246, 656
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 2 cut(s) 246, 656
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 5 cut(s) 139, 190, 433, 655, 1174
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 188, 189, 1116
PsuI RGATCY 2 cut(s) 530, 653
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 152, 470, 1106
RsaNI GTAC 3 cut(s) 151, 469, 1105
RseI CAYNNNNRTG 2 cut(s) 177, 408
SaqAI TTAA 2 cut(s) 762, 791
SatI GCNGC 6 cut(s) 15, 42, 170, 549, 663, 930
Sau3AI GATC 9 cut(s) 87, 102, 204, 226, 388, 520, 530, 653, 946
Sau96I GGNCC 3 cut(s) 188, 189, 1116
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 5 cut(s) 88, 355, 990, 1105, 1141
ScrFI CCNGG 3 cut(s) 248, 658, 1196
SduI GDGCHC 3 cut(s) 119, 192, 434
SfaNI GCATC 2 cut(s) 52, 308
SmiMI CAYNNNNRTG 2 cut(s) 177, 408
SmlI CTYRAG 1 cut(s) 1216
SmoI CTYRAG 1 cut(s) 1216
Sse9I AATT 4 cut(s) 312, 399, 476, 516
SsiI CCGC 6 cut(s) 15, 42, 549, 561, 687, 1204
SspI AATATT 1 cut(s) 1054
SspMI CTAG 2 cut(s) 536, 590
StyD4I CCNGG 3 cut(s) 246, 656, 1194
StyI CCWWGG 3 cut(s) 126, 141, 326
TaaI ACNGT 1 cut(s) 1027
TaiI ACGT 2 cut(s) 156, 187
TasI AATT 4 cut(s) 312, 399, 476, 516
TatI WGTACW 1 cut(s) 468
TauI GCSGC 3 cut(s) 17, 44, 551
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 762, 791
Tru9I TTAA 2 cut(s) 762, 791
TscAI CASTG 7 cut(s) 412, 511, 615, 721, 784, 805, 909
TseFI GTSAC 4 cut(s) 485, 502, 707, 1021
TseI GCWGC 3 cut(s) 169, 662, 929
Tsp45I GTSAC 4 cut(s) 485, 502, 707, 1021
TspDTI ATGAA 8 cut(s) 17, 209, 249, 470, 830, 888, 907, 1054
TspRI CASTG 7 cut(s) 412, 511, 615, 721, 784, 805, 909
Van91I CCANNNNNTGG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 115
XapI RAATTY 2 cut(s) 399, 476
XceI RCATGY 1 cut(s) 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XspI CTAG 2 cut(s) 536, 590
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.