Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002569

Physical Location & Seq

Genomic Coordinates Reverse (-)

22563497 .. 22567975

Gene Structure 4479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG228900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAATGCTCTTGCAGCCACCAACCGCAATTTTCGCCATGCAGCTCGCATTCTTGGGCTGGATGAGAAGCTTGAGAAGAGTCTTTTGATTCCCTTCAGAGAAATCAAAGTTGAGTGTACTATTCCAAAAGATGATGGCAGTCTGGTTTCCTATGTGGGATTTAGAATCCAACATGACAATGCTCGTGGCCCAATGAAAGGAGGAATTCGTTACCATCCTGAGGTTGACCCGGATGAAGTGAATGCTCTAGCTCAACTAATGACATGGAAGACAGCTGTGGCAAATATTCCTTATGGGGGAGCTAAGGGTGGGATTGGCTGCAACCCAAGGGACCTGAGTATCAGCGAGTTAGAACGTTTGACTCGTGTTTTTACTCAGAGGATCCATGATCTCATCGGAATTCACAGGGATGTTCCTGCCCCTGACATGGGAACAAATGCGCAGACAATGGCTTGGATTCTTGATGAGTACTCAAAGTTTCATGGGCACTCACCTGCAGTTGTGACAGGAAAACCTATTGATCTTGGGGGTTCACTTGGAAGGGAGTCTGCAACTGGACTTGGGGTGGTTTTTGCAACAGAAGCTGTACTTGCTGAGTTTGGGAAGTCAATTTCTGGCTTGAAGTTTGTTATACAGGGCTTTGGAAACGTGGGCGCATGGGCAGCCAAGTTGATTCATGATAGAGGGGGTCATGTCATTGCTGTTAGTGACATCAGTGGTGCAATTAGGAACACAAGTGGAATTGATATCCCAGCTCTACTGAAACACAAAGAGAGCAATGCAAATTTGAAGGAATTCCAAGGTGCAGAGGCTATGGACCCAAATGACTTGCTTCTTCACGAATGTGATGTTCTCATTCCATGTGCCTTAGGAGGAGTCATTAACAAGGATAATGCTGCTGATGTTAAGGCAAAGTTCATTATAGAGGCTGCAAACCACCCCACTGACCCTGAAGCTGATGAGGTAATAAGCCTCTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

327

Amino Acids

35.13

Weight (kDa)

5.84

Isoelectric Point (pI)

19.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 159	4e-50	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	176 - 323	8.5e-46	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07440 AT5G07440 AT5G07440
fragaria_vesca	FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_7g26540 FvH4_7g26540
malus_domestica	MD01G1174400.v1.1 MD04G1055700.v1.1 MD07G1241100.v1.1
prunus_persica	Prupe.2G269800_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1
pyrus_communis	pycom01g18610 pycom04g04900 pycom07g21730
rosa_chinensis	RchiOBHm_Chr1g0373211 RchiOBHm_Chr7g0205521
rosa_laevigata	RLG00000003372 RLG00000026843
rosa_multiflora	Rmu_sc0000170.1_g000011 Rmu_sc0002237.1_g000014
rosa_roxburghii	Rroxscaffold_3G00252160 Rroxscaffold_4G00284390
rosa_rugosa	Rorug01G0376700 Rorug07G0092000
rosa_samantha	Rh1AG385300 Rh1BG349300 Rh1CG362600 Rh1DG380200 Rh7AG222500 Rh7BG217900 Rh7CG234900 Rh7DG228900
rosa_wichuraiana	Rw1G033990 Rw7G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	502
AciI	CCGC	1 cut(s)	25
AclI	AACGTT	1 cut(s)	355
AclWI	GGATC	2 cut(s)	376, 389
AcsI	RAATTY	4 cut(s)	204, 399, 784, 794
AcuI	CTGAAG	2 cut(s)	79, 972
AfaI	GTAC	3 cut(s)	118, 470, 588
AfiI	CCNNNNNNNGG	5 cut(s)	197, 220, 296, 427, 428
AgsI	TTSAA	2 cut(s)	622, 790
AleI	CACNNNNGTG	1 cut(s)	843
AluBI	AGCT	8 cut(s)	44, 70, 251, 275, 302, 584, 755, 956
AluI	AGCT	8 cut(s)	44, 70, 251, 275, 302, 584, 755, 956
AlwI	GGATC	2 cut(s)	376, 389
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
ApoI	RAATTY	4 cut(s)	204, 399, 784, 794
Asp700I	GAANNNNTTC	1 cut(s)	794
AspLEI	GCGC	2 cut(s)	442, 656
AspS9I	GGNCC	3 cut(s)	188, 331, 817
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	331, 817
AxyI	CCTNAGG	2 cut(s)	219, 868
BaeGI	GKGCMC	1 cut(s)	489
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BamHI	GGATCC	1 cut(s)	381
BauI	CACGAG	2 cut(s)	183, 363
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BccI	CCATC	2 cut(s)	128, 222
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
BlsI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	331, 817
BmgT120I	GGNCC	3 cut(s)	188, 331, 817
BmiI	GGNNCC	3 cut(s)	332, 383, 819
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	326, 799
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 220, 296, 427, 428
Bse1I	ACTGG	1 cut(s)	559
Bse21I	CCTNAGG	2 cut(s)	219, 868
Bse3DI	GCAATG	2 cut(s)	696, 784
BseDI	CCNNGG	2 cut(s)	326, 799
BseGI	GGATG	4 cut(s)	67, 214, 238, 415
BseLI	CCNNNNNNNGG	5 cut(s)	197, 220, 296, 427, 428
BseMI	GCAATG	2 cut(s)	696, 784
BseMII	CTCAG	4 cut(s)	210, 326, 389, 585
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	888
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	5 cut(s)	197, 220, 296, 427, 428
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	3 cut(s)	10, 48, 247
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	381, 388, 520
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	4 cut(s)	211, 327, 388, 586
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	332, 383, 819
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	2 cut(s)	376, 389
BsrDI	GCAATG	2 cut(s)	696, 784
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	326, 799
BssMI	GATC	3 cut(s)	381, 388, 520
BssSI	CACGAG	2 cut(s)	183, 363
BssT1I	CCWWGG	2 cut(s)	326, 799
Bst2BI	CACGAG	2 cut(s)	183, 363
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
BstF5I	GGATG	4 cut(s)	67, 214, 238, 415
BstHHI	GCGC	2 cut(s)	442, 656
BstKTI	GATC	3 cut(s)	384, 391, 523
BstMBI	GATC	3 cut(s)	381, 388, 520
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 33, 581, 590, 662
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
Bsu36I	CCTNAGG	2 cut(s)	219, 868
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	67, 214, 238, 415
BtsIMutI	CAGTG	2 cut(s)	721, 942
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	442, 656
Cfr13I	GGNCC	3 cut(s)	188, 331, 817
Csp6I	GTAC	3 cut(s)	117, 469, 587
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviQI	GTAC	3 cut(s)	117, 469, 587
DdeI	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
DpnI	GATC	3 cut(s)	383, 390, 522
DpnII	GATC	3 cut(s)	381, 388, 520
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	326, 799
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	331, 817
Eco57I	CTGAAG	2 cut(s)	79, 972
Eco81I	CCTNAGG	2 cut(s)	219, 868
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	3 cut(s)	204, 399, 794
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	326, 799
ErhI	CCWWGG	2 cut(s)	326, 799
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	344
Fnu4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FokI	GGATG	4 cut(s)	74, 201, 245, 422
Fsp4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FspBI	CTAG	1 cut(s)	248
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	2 cut(s)	441, 655
GluI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
GsaI	CCCAGC	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	2 cut(s)	442, 656
Hin6I	GCGC	2 cut(s)	440, 654
HinP1I	GCGC	2 cut(s)	440, 654
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	8 cut(s)	79, 88, 165, 361, 457, 545, 673, 876
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	3 cut(s)	117, 226, 533
Hpy188I	TCNGA	3 cut(s)	98, 378, 398
Hpy188III	TCNNGA	4 cut(s)	218, 461, 677, 839
Hpy8I	GTNNAC	3 cut(s)	117, 226, 533
HpyAV	CCTTC	3 cut(s)	103, 534, 784
HpyCH4IV	ACGT	2 cut(s)	355, 648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 33, 581, 590, 662
HpyF3I	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
HpySE526I	ACGT	2 cut(s)	355, 648
HspAI	GCGC	2 cut(s)	440, 654
Kzo9I	GATC	3 cut(s)	381, 388, 520
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	355, 648
MaeIII	GTNAC	3 cut(s)	209, 502, 707
MalI	GATC	3 cut(s)	383, 390, 522
MboI	GATC	3 cut(s)	381, 388, 520
MboII	GAAGA	3 cut(s)	88, 280, 827
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	8 cut(s)	28, 204, 399, 609, 723, 741, 784, 794
MlyI	GAGTC	4 cut(s)	88, 355, 554, 885
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	194, 214, 372, 677, 802, 866, 919, 955, 983
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	2 cut(s)	882, 906
MslI	CAYNNNNRTG	3 cut(s)	177, 408, 843
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	3 cut(s)	10, 48, 247
MwoI	GCNNNNNNNGC	5 cut(s)	14, 33, 581, 590, 662
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	381, 388, 520
NlaIV	GGNNCC	3 cut(s)	332, 383, 819
NmuCI	GTSAC	2 cut(s)	502, 707
NsbI	TGCGCA	1 cut(s)	441
OliI	CACNNNNGTG	1 cut(s)	843
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PctI	GAATGC	3 cut(s)	10, 48, 247
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	88, 165, 457, 673
PkrI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
PleI	GAGTC	4 cut(s)	87, 355, 553, 884
PpsI	GAGTC	4 cut(s)	87, 355, 553, 884
PpuMI	RGGWCCY	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	332, 383, 819
PspPI	GGNCC	3 cut(s)	188, 331, 817
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	3 cut(s)	118, 470, 588
RsaNI	GTAC	3 cut(s)	117, 469, 587
RseI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SaqAI	TTAA	2 cut(s)	882, 906
SatI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
Sau3AI	GATC	3 cut(s)	381, 388, 520
Sau96I	GGNCC	3 cut(s)	188, 331, 817
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	4 cut(s)	88, 355, 554, 885
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	2 cut(s)	331, 817
SmiMI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	8 cut(s)	28, 204, 399, 609, 723, 741, 784, 794
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	326, 799
TaiI	ACGT	2 cut(s)	358, 651
TasI	AATT	8 cut(s)	28, 204, 399, 609, 723, 741, 784, 794
TatI	WGTACW	3 cut(s)	116, 468, 586
TfiI	GAWTC	4 cut(s)	88, 165, 457, 673
Tru1I	TTAA	2 cut(s)	882, 906
Tru9I	TTAA	2 cut(s)	882, 906
TscAI	CASTG	2 cut(s)	721, 949
TseFI	GTSAC	2 cut(s)	502, 707
TseI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
Tsp45I	GTSAC	2 cut(s)	502, 707
TspDTI	ATGAA	6 cut(s)	17, 209, 249, 470, 665, 907
TspRI	CASTG	2 cut(s)	721, 949
VpaK11BI	GGWCC	2 cut(s)	331, 817
XapI	RAATTY	4 cut(s)	204, 399, 784, 794
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.