Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002569

Physical Location & Seq

Genomic Coordinates Forward (+)

7203525 .. 7206426

Gene Structure 2902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGCAAGGATTCTTGCCAACTTGCTTGTGGTTGGCTCAGGAGTGTTGGCCAGGGCTTTTGTTCAAGCATACCGCCAGGCACTTACAAATGCCTCGAAAACTGGCGTTGCTCATGAAGCAGCACAGAGTATTAGGAGAGCAAGCAAAACTATGGCTGAAGGAGAGGCAAGGCAGGTATTAGGTGTCACTGAGCATGCATCATGGGAGGAGATTGTGCAGAGATATGACACCATGTTCGAGCGGAATGCGAAAAACGGAAGCTTTTATCTCCAGTCAAAGGTCCATAGAGCTAAAGAATGCTTAGAAGACGTTTACGGAAAGAAGGCTGAGGGGATTACTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

116

Amino Acids

12.74

Weight (kDa)

9.16

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 105	2.9e-19	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07440 AT5G07440 AT5G07440
fragaria_vesca	FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_7g26540 FvH4_7g26540
malus_domestica	MD01G1174400.v1.1 MD04G1055700.v1.1 MD07G1241100.v1.1
prunus_persica	Prupe.2G269800_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1
pyrus_communis	pycom01g18610 pycom04g04900 pycom07g21730
rosa_chinensis	RchiOBHm_Chr1g0373211 RchiOBHm_Chr7g0205521
rosa_laevigata	RLG00000003372 RLG00000026843
rosa_multiflora	Rmu_sc0000170.1_g000011 Rmu_sc0002237.1_g000014
rosa_roxburghii	Rroxscaffold_3G00252160 Rroxscaffold_4G00284390
rosa_rugosa	Rorug01G0376700 Rorug07G0092000
rosa_samantha	Rh1AG385300 Rh1BG349300 Rh1CG362600 Rh1DG380200 Rh7AG222500 Rh7BG217900 Rh7CG234900 Rh7DG228900
rosa_wichuraiana	Rw1G033990 Rw7G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	2 cut(s)	76, 244
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	53, 78
AluBI	AGCT	2 cut(s)	264, 293
AluI	AGCT	2 cut(s)	264, 293
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	5, 122
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	55, 80
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	6, 123
BlsI	GCNGC	2 cut(s)	7, 124
Bme1390I	CCNGG	2 cut(s)	55, 80
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	55, 80
BmsI	GCATC	2 cut(s)	209, 334
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	2 cut(s)	40, 330
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	109, 274
BseBI	CCWGG	2 cut(s)	55, 80
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	54, 183, 321
BseNI	ACTGG	2 cut(s)	109, 274
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmI	GAATGC	2 cut(s)	253, 305
BsnI	GGCC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	76, 244
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	53, 184, 322
BspHI	TCATGA	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	109, 274
BssECI	CCNNGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	55, 80
BstC8I	GCNNGC	2 cut(s)	145, 198
BstDEI	CTNAG	4 cut(s)	40, 192, 304, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	55, 80
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	53, 78
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	145, 198
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	4 cut(s)	116, 197, 204, 235
CviJI	RGCY	8 cut(s)	5, 39, 53, 59, 158, 264, 293, 329
CviKI_1	RGCY	8 cut(s)	5, 39, 53, 59, 158, 264, 293, 329
DdeI	CTNAG	4 cut(s)	40, 192, 304, 330
EaeI	YGGCCR	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	53, 78
EcoT22I	ATGCAT	2 cut(s)	202, 349
FaeI	CATG	4 cut(s)	119, 200, 207, 238
FaiI	YATR	9 cut(s)	73, 117, 155, 198, 205, 228, 236, 288, 349
FatI	CATG	4 cut(s)	115, 196, 203, 234
Fnu4HI	GCNGC	2 cut(s)	6, 123
Fsp4HI	GCNGC	2 cut(s)	6, 123
GluI	GCNGC	2 cut(s)	6, 123
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	119, 200, 207, 238
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	42, 116
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	155, 319
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	8, 200, 220, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	40, 192, 304, 330
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	119, 200, 207, 238
LpnPI	CCDG	8 cut(s)	27, 40, 65, 67, 90, 92, 161, 287
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	2 cut(s)	209, 334
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	187
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	4 cut(s)	106, 160, 202, 325
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	2 cut(s)	202, 349
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	55, 80
Mva1269I	GAATGC	2 cut(s)	253, 305
MvaI	CCWGG	2 cut(s)	55, 80
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	4 cut(s)	119, 200, 207, 238
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	2 cut(s)	202, 349
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	2 cut(s)	253, 305
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	7, 124
Psp6I	CCWGG	2 cut(s)	53, 78
PspGI	CCWGG	2 cut(s)	53, 78
PspPI	GGNCC	1 cut(s)	283
SatI	GCNGC	2 cut(s)	6, 123
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	55, 80
SetI	ASST	6 cut(s)	180, 187, 266, 285, 295, 315
SfaNI	GCATC	2 cut(s)	209, 334
SinI	GGWCC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	200
SsiI	CCGC	2 cut(s)	76, 244
StyD4I	CCNGG	2 cut(s)	53, 78
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	98, 240
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	5, 122
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	2 cut(s)	273, 333
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
Zsp2I	ATGCAT	2 cut(s)	202, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.