Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002569

Physical Location & Seq

Genomic Coordinates Forward (+)

6153389 .. 6157970

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G056900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGTCATTATTGGTCATATCCCAGCACCCATGAATGCTCTTGCAGCCACCAACCGCAACTTTCGTCATGCAGCTCGCATTCTTGGGCTGGATTCTAAGCTTGAGAAAAGCCTTTTGATTCCCTTTAGAGAAATCAAAGTTGAGTGTACAATTCCAAAAGATGATGGCACTCTGGTTTCTTATGTTGGGTTTAGAATCCAACATGACAATGCTCGTGGGCCGATGAAAGGAGGAATCCGTTACCACCCCGAGGTTGACCCAGATGAAGTGAATGCTCTAGCTCAACTAATGACATGGAAGACAGCTGTAGCAAACATTCCTTATGGTGGAGCTAAGGGTGGGATTGGGTGCAACCCAAGGGACTTGAGTATGAGTGAATTAGAACGGTTAACTCGTGTGTTTACTCAGAGGATCCATGATCTCATTGGAATTCACAGGGATGTTCCTGCCCCTGACATGGGAACCAATGCTCAGACAATGGCTTGGATTCTTGATGAGTACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACTGGAAAACCTATTGATCTCGGGGGTTCACTTGGAAGGGAGTCTGCGACTGGACTTGGGGTGGTTTTCGCAACAGAGTCTGTACTTGCTGAATATGGGAAGTCAATTTCTGGTATGAAGTTTGTTATCCAGGGTTTTGGAAATGTTGGATCATGGGCAGCCAAGTTGATCCATGATAGAGGGGGTAAGGTCGTTGCTGTCAGTGACATCACTGGTGCAATTAAAAATCCAGATGGAATTGATATCCCAGCTCTGCTGAGATACAAAGAGAGCAACACAAGTTTGAAGGAATTCCAAGGGACAGACGCTATGGACCCGAATGACTTGCTTGTTCATGAATGTGATGTTCTCATTCCATGTGCCCTAGGAGGGGTCATTAACAAGGAAAATGCAGCTGATGTGAAGGCAAAATTCATAATAGAGGCTGCAAATCATCCCACTGACCCTGAAGCAGATGAGATTTTGTCCAACAAGGGAGTTGTTATTCTCCCCGACATATATGCAAATGCCGGTGGTGTGACGGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGATTTATGTGGGAAGAAGAAAAAGTTAACTGTGAGCTTAAAAGGTACATGCACAAGGCTTTCCTTGACATCAAAGCAATGTGTCAAATTCATAACTGCAACTTGAGAATGGGAGCTTTTACTCTTGGGGTGAACCGGGTTGCGCGTGCTACGATCTTGAGGGGCTGGGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

422

Amino Acids

45.92

Weight (kDa)

6.24

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07440 AT5G07440 AT5G07440
fragaria_vesca	FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_7g26540 FvH4_7g26540
malus_domestica	MD01G1174400.v1.1 MD04G1055700.v1.1 MD07G1241100.v1.1
prunus_persica	Prupe.2G269800_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1
pyrus_communis	pycom01g18610 pycom04g04900 pycom07g21730
rosa_chinensis	RchiOBHm_Chr1g0373211 RchiOBHm_Chr7g0205521
rosa_laevigata	RLG00000003372 RLG00000026843
rosa_multiflora	Rmu_sc0000170.1_g000011 Rmu_sc0002237.1_g000014
rosa_roxburghii	Rroxscaffold_3G00252160 Rroxscaffold_4G00284390
rosa_rugosa	Rorug01G0376700 Rorug07G0092000
rosa_samantha	Rh1AG385300 Rh1BG349300 Rh1CG362600 Rh1DG380200 Rh7AG222500 Rh7BG217900 Rh7CG234900 Rh7DG228900
rosa_wichuraiana	Rw1G033990 Rw7G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccII	CGCG	1 cut(s)	1234
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	4 cut(s)	406, 419, 691, 697
AcsI	RAATTY	4 cut(s)	429, 824, 944, 1176
AcuI	CTGAAG	1 cut(s)	1002
AfaI	GTAC	4 cut(s)	148, 500, 618, 1136
AfiI	CCNNNNNNNGG	7 cut(s)	227, 250, 326, 457, 458, 903, 904
AgsI	TTSAA	3 cut(s)	820, 1070, 1088
AjnI	CCWGG	1 cut(s)	663
AlwI	GGATC	4 cut(s)	406, 419, 691, 697
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	2 cut(s)	248, 554
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	5 cut(s)	44, 71, 692, 926, 959
ApoI	RAATTY	4 cut(s)	429, 824, 944, 1176
Asp700I	GAANNNNTTC	2 cut(s)	824, 1074
AspA2I	CCTAGG	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	1234
AspS9I	GGNCC	2 cut(s)	218, 847
AsuC2I	CCSGG	1 cut(s)	1226
AsuHPI	GGTGA	3 cut(s)	513, 1069, 1231
AvaI	CYCGRG	2 cut(s)	248, 554
AvaII	GGWCC	1 cut(s)	847
AvrII	CCTAGG	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	898
BamHI	GGATCC	1 cut(s)	411
BauI	CACGAG	2 cut(s)	213, 393
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	5 cut(s)	56, 83, 704, 938, 946
BccI	CCATC	2 cut(s)	158, 761
BcgI	CGANNNNNNTGC	4 cut(s)	841, 875, 1016, 1050
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	1226
BfaI	CTAG	2 cut(s)	278, 899
BfmI	CTRYAG	2 cut(s)	306, 525
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	45, 72, 693, 927, 960
BlnI	CCTAGG	1 cut(s)	898
BlsI	GCNGC	5 cut(s)	46, 73, 694, 928, 961
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	665, 1226
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	2 cut(s)	248, 554
BmgT120I	GGNCC	2 cut(s)	218, 847
BmiI	GGNNCC	3 cut(s)	413, 463, 849
BmrFI	CCNGG	2 cut(s)	665, 1226
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	3 cut(s)	122, 385, 1213
BpuMI	CCSGG	1 cut(s)	1226
BsaJI	CCNNGG	5 cut(s)	249, 356, 664, 829, 898
Bsc4I	CCNNNNNNNGG	7 cut(s)	227, 250, 326, 457, 458, 903, 904
Bse118I	RCCGGY	1 cut(s)	1043
Bse1I	ACTGG	3 cut(s)	541, 589, 751
Bse3DI	GCAATG	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	5 cut(s)	249, 356, 664, 829, 898
BseGI	GGATG	2 cut(s)	445, 967
BseLI	CCNNNNNNNGG	7 cut(s)	227, 250, 326, 457, 458, 903, 904
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	3 cut(s)	419, 485, 782
BseNI	ACTGG	3 cut(s)	541, 589, 751
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	5 cut(s)	56, 83, 704, 938, 946
BseYI	CCCAGC	3 cut(s)	22, 781, 1254
Bsh1236I	CGCG	1 cut(s)	1234
BshFI	GGCC	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	248, 554
BsiSI	CCGG	2 cut(s)	1044, 1225
BslFI	GGGAC	2 cut(s)	374, 847
BslI	CCNNNNNNNGG	7 cut(s)	227, 250, 326, 457, 458, 903, 904
BsmFI	GGGAC	2 cut(s)	374, 847
BsmI	GAATGC	4 cut(s)	40, 78, 277, 517
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	2 cut(s)	248, 554
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp1407I	TGTACA	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	3 cut(s)	418, 484, 783
BspFNI	CGCG	1 cut(s)	1234
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	413, 463, 849
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	4 cut(s)	406, 419, 691, 697
BsrDI	GCAATG	1 cut(s)	1173
BsrFI	RCCGGY	1 cut(s)	1043
BsrGI	TGTACA	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	541, 589, 751
BssAI	RCCGGY	1 cut(s)	1043
BssECI	CCNNGG	5 cut(s)	249, 356, 664, 829, 898
BssMI	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
BssSI	CACGAG	2 cut(s)	213, 393
BssT1I	CCWWGG	3 cut(s)	356, 829, 898
Bst2BI	CACGAG	2 cut(s)	213, 393
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	387, 1057, 1121
BstAUI	TGTACA	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	76, 1236
BstDEI	CTNAG	5 cut(s)	96, 333, 405, 471, 791
BstF5I	GGATG	2 cut(s)	445, 967
BstFNI	CGCG	1 cut(s)	1234
BstHHI	GCGC	1 cut(s)	1234
BstKTI	GATC	6 cut(s)	414, 421, 553, 686, 705, 1245
BstMBI	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	2 cut(s)	663, 1224
BstSFI	CTRYAG	2 cut(s)	306, 525
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	1234
BstV1I	GCAGC	5 cut(s)	56, 83, 704, 938, 946
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	445, 967
BtsIMutI	CAGTG	3 cut(s)	742, 744, 972
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	76, 1236
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	1 cut(s)	1234
Cfr10I	RCCGGY	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	218, 847
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	4 cut(s)	147, 499, 617, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviQI	GTAC	4 cut(s)	147, 499, 617, 1135
DdeI	CTNAG	5 cut(s)	96, 333, 405, 471, 791
DpnI	GATC	6 cut(s)	413, 420, 552, 685, 704, 1244
DpnII	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
Eco130I	CCWWGG	3 cut(s)	356, 829, 898
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	1002
Eco88I	CYCGRG	2 cut(s)	248, 554
EcoRI	GAATTC	2 cut(s)	429, 824
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	3 cut(s)	356, 829, 898
ErhI	CCWWGG	3 cut(s)	356, 829, 898
FaqI	GGGAC	2 cut(s)	374, 847
Fnu4HI	GCNGC	5 cut(s)	45, 72, 693, 927, 960
FokI	GGATG	2 cut(s)	452, 954
Fsp4HI	GCNGC	5 cut(s)	45, 72, 693, 927, 960
FspBI	CTAG	2 cut(s)	278, 899
GlaI	GCGC	1 cut(s)	1233
GluI	GCNGC	5 cut(s)	45, 72, 693, 927, 960
GsaI	CCCAGC	3 cut(s)	26, 785, 1258
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	1044, 1225
HgaI	GACGC	1 cut(s)	848
HhaI	GCGC	1 cut(s)	1234
Hin6I	GCGC	1 cut(s)	1232
HinP1I	GCGC	1 cut(s)	1232
HincII	GTYRAC	3 cut(s)	256, 390, 1117
HindII	GTYRAC	3 cut(s)	256, 390, 1117
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	7 cut(s)	92, 118, 195, 234, 487, 575, 611
HpaI	GTTAAC	2 cut(s)	390, 1117
HpaII	CCGG	2 cut(s)	1044, 1225
HphI	GGTGA	3 cut(s)	513, 1069, 1231
Hpy166II	GTNNAC	7 cut(s)	147, 256, 390, 402, 563, 1117, 1222
Hpy188I	TCNGA	3 cut(s)	408, 474, 1080
Hpy188III	TCNNGA	4 cut(s)	491, 764, 869, 1246
Hpy8I	GTNNAC	7 cut(s)	147, 256, 390, 402, 563, 1117, 1222
HpyAV	CCTTC	3 cut(s)	564, 814, 931
HpyCH4III	ACNGT	3 cut(s)	387, 1057, 1121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	5 cut(s)	96, 333, 405, 471, 791
HspAI	GCGC	1 cut(s)	1232
KspAI	GTTAAC	2 cut(s)	390, 1117
Kzo9I	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
LmnI	GCTCC	2 cut(s)	329, 1202
Lsp1109I	GCAGC	5 cut(s)	56, 83, 704, 938, 946
MaeI	CTAG	2 cut(s)	278, 899
MaeIII	GTNAC	4 cut(s)	239, 532, 737, 1051
MalI	GATC	6 cut(s)	413, 420, 552, 685, 704, 1244
MboI	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
MboII	GAAGA	3 cut(s)	310, 1115, 1118
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	9 cut(s)	150, 377, 429, 639, 753, 771, 824, 944, 1176
MlyI	GAGTC	2 cut(s)	584, 620
MmeI	TCCRAC	3 cut(s)	223, 661, 1026
MnlI	CCTC	7 cut(s)	224, 244, 402, 707, 896, 949, 1242
MroXI	GAANNNNTTC	2 cut(s)	824, 1074
MseI	TTAA	5 cut(s)	389, 756, 912, 1116, 1128
MslI	CAYNNNNRTG	3 cut(s)	207, 438, 873
MspA1I	CMGCKG	2 cut(s)	305, 929
MspI	CCGG	2 cut(s)	1044, 1225
MspR9I	CCNGG	2 cut(s)	665, 1226
Mva1269I	GAATGC	4 cut(s)	40, 78, 277, 517
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	1234
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	1226
NdeII	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
NlaIV	GGNNCC	3 cut(s)	413, 463, 849
NmuCI	GTSAC	3 cut(s)	532, 737, 1051
NspI	RCATGY	1 cut(s)	1141
PagI	TCATGA	1 cut(s)	868
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	4 cut(s)	40, 78, 277, 517
PdmI	GAANNNNTTC	2 cut(s)	824, 1074
PfeI	GAWTC	5 cut(s)	92, 118, 195, 234, 487
PkrI	GCNGC	5 cut(s)	46, 73, 694, 928, 961
PleI	GAGTC	2 cut(s)	583, 619
PpsI	GAGTC	2 cut(s)	583, 619
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	3 cut(s)	22, 781, 1254
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	413, 463, 849
PspPI	GGNCC	2 cut(s)	218, 847
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	2 cut(s)	305, 929
RsaI	GTAC	4 cut(s)	148, 500, 618, 1136
RsaNI	GTAC	4 cut(s)	147, 499, 617, 1135
RseI	CAYNNNNRTG	3 cut(s)	207, 438, 873
SaqAI	TTAA	5 cut(s)	389, 756, 912, 1116, 1128
SatI	GCNGC	5 cut(s)	45, 72, 693, 927, 960
Sau3AI	GATC	6 cut(s)	411, 418, 550, 683, 702, 1242
Sau96I	GGNCC	2 cut(s)	218, 847
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	2 cut(s)	584, 620
ScrFI	CCNGG	2 cut(s)	665, 1226
SduI	GDGCHC	1 cut(s)	898
SfcI	CTRYAG	2 cut(s)	306, 525
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	3 cut(s)	207, 438, 873
SmlI	CTYRAG	4 cut(s)	101, 364, 1192, 1246
SmoI	CTYRAG	4 cut(s)	101, 364, 1192, 1246
Sse9I	AATT	9 cut(s)	150, 377, 429, 639, 753, 771, 824, 944, 1176
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	2 cut(s)	278, 899
StyD4I	CCNGG	2 cut(s)	663, 1224
StyI	CCWWGG	3 cut(s)	356, 829, 898
TaaI	ACNGT	3 cut(s)	387, 1057, 1121
TasI	AATT	9 cut(s)	150, 377, 429, 639, 753, 771, 824, 944, 1176
TatI	WGTACW	3 cut(s)	146, 498, 616
TfiI	GAWTC	5 cut(s)	92, 118, 195, 234, 487
Tru1I	TTAA	5 cut(s)	389, 756, 912, 1116, 1128
Tru9I	TTAA	5 cut(s)	389, 756, 912, 1116, 1128
TscAI	CASTG	3 cut(s)	742, 751, 979
TseFI	GTSAC	3 cut(s)	532, 737, 1051
TseI	GCWGC	5 cut(s)	44, 71, 692, 926, 959
Tsp45I	GTSAC	3 cut(s)	532, 737, 1051
TspDTI	ATGAA	9 cut(s)	47, 239, 279, 500, 665, 857, 885, 937, 1169
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	742, 751, 979
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	4 cut(s)	429, 824, 944, 1176
XceI	RCATGY	1 cut(s)	1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmaJI	CCTAGG	1 cut(s)	898
XmnI	GAANNNNTTC	2 cut(s)	824, 1074
XspI	CTAG	2 cut(s)	278, 899
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.