Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002569

Physical Location & Seq

Genomic Coordinates Reverse (-)

12008817 .. 12013092

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20340.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATGCTCTTGCAGCCACCAACCGCAATTTTCGCCATGCAGCTCGCATTCTTGGGCTAGATGAGAAGCTTGAGAAGAGTCTTTTGATTCCCTTTAGAGAAATCAAAGTTGAGTGTACTATTCCAAAAGATGATGGTACTCTTGTTTCCTATGTGGGATTTAGAGTCCAACATGACAATGCTCGTGGCCCGATGAAAGGAGGAATCCGTTACCATCCTGAGGTTGACCCGGATGAAGTGAATGCTCTAGCTCAGTTAATGACATGGAAGACAGCTGTGGCAAATATTCCTTATGGGGGAGCTAAGGGTGGGATTGGCTGCAACCCAAGGGACCTGAGTATCAGTGAGTTAGAACGTTTGACTCGTGTTTTTACTCAGAGGATACATGATCTCATTGGAATTCACAGGGATGTTCCTGCCCCTGACATGGGAACAAACGCCCAGACTATGGCTTGGATTCTTGATGAGTACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGAAAACCTATTGATCTTGGGGGTTCACTTGGAAGGGAGTCTGCAACTGGACTTGGAGTGGTTTTTGCGACAGAAGCTGTACTTGCTGAGTATGGGAAGTCAATTTCAGGCTTGAAGTTTGTTATACAGGGTTTTGGAAATGTGGGCTCATGGGCAGCCAAGTTGATTCATGATAGAGGGGGTCATATCGTTGCTGTTAGTGACATCAGTGGTGCAATTAGGAATACAAGTGGAATTGATATCCCAGCTCTACTGAAACACAAAGAGAGCAATGCGAATATGAAAGAATTCCAAGGTGCCGAGTCTATGGACCCAAATGACTTGCTTCTTCACGAATGTGATGTTCTCATTCCCTGTGCCTTGGGAGGGGTTATTAACAAGGACAATGCTGCAGATATTGAGGCAAAGTTCATTATAGAGGCTGCCAACCATCCCACTGACCCTGAAGCCGATGAGTTCTTCTTCCGCAGATATTGTGCAAGAAAGGAGTTGTTATTCTCCCTGACATATATGCCAATGCTGGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

346

Amino Acids

37.6

Weight (kDa)

5.95

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 159	1.8e-50	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	176 - 351	1e-62	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07440 AT5G07440 AT5G07440
fragaria_vesca	FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_5g20340 FvH4_7g26540 FvH4_7g26540
malus_domestica	MD01G1174400.v1.1 MD04G1055700.v1.1 MD07G1241100.v1.1
prunus_persica	Prupe.2G269800_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1 Prupe.5G056900_v2.0.a1
pyrus_communis	pycom01g18610 pycom04g04900 pycom07g21730
rosa_chinensis	RchiOBHm_Chr1g0373211 RchiOBHm_Chr7g0205521
rosa_laevigata	RLG00000003372 RLG00000026843
rosa_multiflora	Rmu_sc0000170.1_g000011 Rmu_sc0002237.1_g000014
rosa_roxburghii	Rroxscaffold_3G00252160 Rroxscaffold_4G00284390
rosa_rugosa	Rorug01G0376700 Rorug07G0092000
rosa_samantha	Rh1AG385300 Rh1BG349300 Rh1CG362600 Rh1DG380200 Rh7AG222500 Rh7BG217900 Rh7CG234900 Rh7DG228900
rosa_wichuraiana	Rw1G033990 Rw7G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	448
AciI	CCGC	2 cut(s)	25, 973
AclI	AACGTT	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	399, 794
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	4 cut(s)	118, 139, 470, 588
AfiI	CCNNNNNNNGG	7 cut(s)	197, 220, 296, 427, 428, 448, 873
AgsI	TTSAA	1 cut(s)	622
AleI	CACNNNNGTG	1 cut(s)	843
AluBI	AGCT	7 cut(s)	44, 70, 251, 275, 302, 584, 755
AluI	AGCT	7 cut(s)	44, 70, 251, 275, 302, 584, 755
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
ApoI	RAATTY	2 cut(s)	399, 794
Asp700I	GAANNNNTTC	1 cut(s)	794
AspS9I	GGNCC	3 cut(s)	188, 331, 817
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	331, 817
AxyI	CCTNAGG	1 cut(s)	219
BaeI	ACNNNNGTAYC	4 cut(s)	129, 162, 322, 355
BanI	GGYRCC	1 cut(s)	803
BanII	GRGCYC	1 cut(s)	656
BauI	CACGAG	2 cut(s)	183, 363
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BccI	CCATC	3 cut(s)	128, 222, 945
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	2 cut(s)	59, 248
BfmI	CTRYAG	2 cut(s)	495, 897
BfuAI	ACCTGC	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
BlsI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	331, 817
BmgT120I	GGNCC	3 cut(s)	188, 331, 817
BmiI	GGNNCC	3 cut(s)	332, 805, 819
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	326, 799, 867
Bsc4I	CCNNNNNNNGG	7 cut(s)	197, 220, 296, 427, 428, 448, 873
Bse1I	ACTGG	1 cut(s)	559
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	784
BseDI	CCNNGG	3 cut(s)	326, 799, 867
BseGI	GGATG	4 cut(s)	214, 238, 415, 937
BseLI	CCNNNNNNNGG	7 cut(s)	197, 220, 296, 427, 428, 448, 873
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	5 cut(s)	210, 266, 326, 389, 585
BseNI	ACTGG	1 cut(s)	559
BseXI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BseYI	CCCAGC	1 cut(s)	751
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	7 cut(s)	197, 220, 296, 427, 428, 448, 873
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	4 cut(s)	10, 48, 247, 487
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	2 cut(s)	388, 520
BspACI	CCGC	2 cut(s)	25, 973
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	5 cut(s)	211, 265, 327, 388, 586
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	332, 805, 819
BspMAI	CTGCAG	2 cut(s)	499, 901
BspMI	ACCTGC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	326, 799, 867
BssMI	GATC	2 cut(s)	388, 520
BssSI	CACGAG	2 cut(s)	183, 363
BssT1I	CCWWGG	3 cut(s)	326, 799, 867
Bst2BI	CACGAG	2 cut(s)	183, 363
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	6 cut(s)	219, 252, 303, 335, 375, 594
BstF5I	GGATG	4 cut(s)	214, 238, 415, 937
BstKTI	GATC	2 cut(s)	391, 523
BstMBI	GATC	2 cut(s)	388, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	495, 897
BstV1I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BstV2I	GAAGAC	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	214, 238, 415, 937
BtsIMutI	CAGTG	3 cut(s)	349, 721, 942
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	3 cut(s)	188, 331, 817
Csp6I	GTAC	4 cut(s)	117, 138, 469, 587
CspCI	CAANNNNNGTGG	3 cut(s)	166, 201, 1011
CviAII	CATG	8 cut(s)	38, 173, 264, 386, 427, 482, 657, 677
CviQI	GTAC	4 cut(s)	117, 138, 469, 587
DdeI	CTNAG	6 cut(s)	219, 252, 303, 335, 375, 594
DpnI	GATC	2 cut(s)	390, 522
DpnII	GATC	2 cut(s)	388, 520
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	3 cut(s)	326, 799, 867
Eco24I	GRGCYC	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	331, 817
Eco57I	CTGAAG	1 cut(s)	972
Eco81I	CCTNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	2 cut(s)	399, 794
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	3 cut(s)	326, 799, 867
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	3 cut(s)	326, 799, 867
FaeI	CATG	8 cut(s)	41, 176, 267, 389, 430, 485, 660, 680
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	8 cut(s)	37, 172, 263, 385, 426, 481, 656, 676
Fnu4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FokI	GGATG	4 cut(s)	201, 245, 422, 924
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FspBI	CTAG	2 cut(s)	59, 248
GluI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
GsaI	CCCAGC	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	8 cut(s)	41, 176, 267, 389, 430, 485, 660, 680
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	9 cut(s)	79, 88, 165, 204, 361, 457, 545, 673, 809
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	3 cut(s)	117, 226, 533
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	4 cut(s)	218, 461, 677, 839
Hpy8I	GTNNAC	3 cut(s)	117, 226, 533
HpyAV	CCTTC	1 cut(s)	534
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	8 cut(s)	14, 41, 321, 497, 551, 722, 899, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
HpyF3I	CTNAG	6 cut(s)	219, 252, 303, 335, 375, 594
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	8 cut(s)	41, 176, 267, 389, 430, 485, 660, 680
Kzo9I	GATC	2 cut(s)	388, 520
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
MaeI	CTAG	2 cut(s)	59, 248
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	209, 502, 707
MalI	GATC	2 cut(s)	390, 522
MboI	GATC	2 cut(s)	388, 520
MboII	GAAGA	5 cut(s)	88, 280, 827, 958, 961
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	6 cut(s)	28, 399, 609, 723, 741, 794
MlyI	GAGTC	5 cut(s)	88, 174, 355, 554, 818
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	7 cut(s)	194, 214, 372, 677, 866, 901, 919
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	2 cut(s)	257, 882
MslI	CAYNNNNRTG	3 cut(s)	177, 408, 843
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	4 cut(s)	10, 48, 247, 487
MwoI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	388, 520
NlaIII	CATG	8 cut(s)	41, 176, 267, 389, 430, 485, 660, 680
NlaIV	GGNNCC	3 cut(s)	332, 805, 819
NmeAIII	GCCGAG	1 cut(s)	832
NmuCI	GTSAC	2 cut(s)	502, 707
OliI	CACNNNNGTG	1 cut(s)	843
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PctI	GAATGC	4 cut(s)	10, 48, 247, 487
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	88, 204, 457, 673
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
PleI	GAGTC	5 cut(s)	87, 173, 355, 553, 817
PpsI	GAGTC	5 cut(s)	87, 173, 355, 553, 817
PpuMI	RGGWCCY	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	332, 805, 819
PspPI	GGNCC	3 cut(s)	188, 331, 817
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	499, 901
PstNI	CAGNNNCTG	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	118, 139, 470, 588
RsaNI	GTAC	4 cut(s)	117, 138, 469, 587
RseI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SaqAI	TTAA	2 cut(s)	257, 882
SatI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
Sau3AI	GATC	2 cut(s)	388, 520
Sau96I	GGNCC	3 cut(s)	188, 331, 817
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	5 cut(s)	88, 174, 355, 554, 818
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	656
SfcI	CTRYAG	2 cut(s)	495, 897
SinI	GGWCC	2 cut(s)	331, 817
SmiMI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	6 cut(s)	28, 399, 609, 723, 741, 794
SsiI	CCGC	2 cut(s)	25, 973
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	59, 248
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	3 cut(s)	326, 799, 867
TaiI	ACGT	1 cut(s)	358
TasI	AATT	6 cut(s)	28, 399, 609, 723, 741, 794
TatI	WGTACW	3 cut(s)	116, 468, 586
TfiI	GAWTC	4 cut(s)	88, 204, 457, 673
Tru1I	TTAA	2 cut(s)	257, 882
Tru9I	TTAA	2 cut(s)	257, 882
TscAI	CASTG	3 cut(s)	349, 721, 949
TseFI	GTSAC	2 cut(s)	502, 707
TseI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
Tsp45I	GTSAC	2 cut(s)	502, 707
TspDTI	ATGAA	7 cut(s)	17, 209, 249, 470, 665, 803, 907
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	3 cut(s)	349, 721, 949
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	331, 817
XapI	RAATTY	2 cut(s)	399, 794
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	2 cut(s)	59, 248
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.