Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2594716 .. 2600192

Gene Structure 5477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3426 bp

ATGGAGAACGAGAGACGCAGCGGCGGAGGAGACAGTGTTCCGATCTCTGTCCGAAGCATTAACGGCGAATCGACGACCGTTCAGGTTTCCTCTGACGGGACAATTCGTGACCTAAAGAAAGCCCTAAAATCCTGTTTCCCTCCCGCTTCCTCTTCTTCCAATTTCCATCTGTATATCAAGGGTGAGAAATTGAAATTGGACACTAGAGTGGCTGCGATTACTATTAATGACGGTGATATCTTGGGTTTATTTCCGTTTAAGAAGAAGGAACTTCGACAGACTCCAAAACCTGATTTATCAAAACCTTCCTCCTTGAGTTCAAGAACCTCAACTATGAAAGATGAAAACGCTAAAAGAGCTGAGGATCATTGTGTTGGTGAGAAACGAAAACGGGATGAAGAAGCGTGTCCATATGGATTCTTTAATGATGATTTGGAGTCTGAGTGTAAAGATGCATTCAAGGGTCAGAACACAGAGAAGCTTGCTGAGGTTTTAAAGTCCAGGAATTGCTTGACATCTCCAGGTTCTACAAAATGCTTGATGTCATGGGATTCAAGTAGCTCTTTGTGTTCTTGTCCTGATTGGGAATCTCTTTCCCGGTTAGCTATGTCTGGAGTTCGTGTTCGTATACAAGACGTTAAGAATCTCTCTGTTATATGCCCCAAGGTTATCACTGATGACTATGAGGCTGTGAACTATGAGAACGCTATAGTTATAGCTGACTATCTGGAGATGGATGAAAAATCAGGTCGTAAAAAAATTCCTCTTGCAAAGCTCTTTAGTGCCATGAAAAAACGGGAGGCTTCCTTTAAGTCTGATTTCTGGGAGTCCATCAGATCGCTACTGAACAAAAATACAGGTGAGAGTGGAATAGCTATTTCCTTGGAGGGCTTGCTTAAATTTGCCAGTGAAGGAAGAGCTGATGGTGGAAACGAAGCTAGACAGGCTGGGAAAGGCACTTGTCCTACCTCTGGTTCTCGTAAATTCCAGACTTTGTGTCATGCCACAAATTCACTGCTACCATCGGAGATGGTTGAACATCTCAGGAATGGTATTGGATCTAAAGGACAGGTAGTTCACGTTGAAGTTATCAAGGCCAGAAAATCTGCCTACGTCGAAATGTCAGATAAGCTCTCGGAAACCACCAAGTCTGCCTTGAAACGAATTGGTCTCAACACATTATACAGCCATCAGGCTGAAGCAATTTCAGCAGCCTTGGCTGGAAAGAATGTTGCGGTTGCAACTATGACTTCCAGTGGAAAATCTCTTTGCTATAACGTGCCAGTCTTTGAGGAATTGTGCAAAGATACAAATTCTTGTGCCTTGTACTTATTTCCGACCAAGGCCTTAGCTCAGGATCAATTAAGAGCATTGTCTGATTTGATAAAAGGATTCGAAGCAAGCATAAACATGGGTGTATACGATGGTGATACTCCTTACAAGGATAGAACAAGGCTGAGGAGTAATGCTAGACTGCTGATCACAAATCCTGATATGTTACATATATCAATTTTGCGTCGCCATAAAGAACAATTCAGCCGGATTTTATCTAACCTTAGGTACATTGTGATTGATGAAGCCCATATTTACAAAGGACCATTTGGCTGCCACATGGCCCTTATATTGAGAAGACTTCGCCGCCTGTGCTCTCATGTATATGGTGTCAATCCTTCTTTCATATTTTGCACTGCAACTTCTGCTAATCCTCGAGAACATTGCATGGAGCTTGCAAACCTATCTGAGCTCGAGCTGGTAACAATAGATGGAAGTCCTTCCTCTGAAAAGCTTTTTGTCTTGTGGAATCCATCAGCTCCTCCAACAAGTAAATCTGAAAAAAGTTCAAAAGTCGTGAGTAGTAGTGAAGCTGCTGCAGATAAACCATCTGGAGCTGCTGTCGATACACTATCAGGCCCAGCTTCTGAAGTTTCACACCTTTTCGCAGAGATGGTTCAGCATGGATTACGTTGTATTGCTTTTTGTCCATCTCGCAAACTCTGTGAACTTGTTCTGTGTTTGACACGTGAAATTCTAGCTGAGACTGCCCCTCATCTGGTTGAAGCCATAACCTCATATCGTGGAGGCTACATTGCTGAGGACCGGAGGAAAATAGAGAGTGATTTATTTGGTGGAAAGCTTTGTGGCATTGCTGCAACAAACGCACTTGAGTTGGGGATTGATGTTGGTCACATCGATGTAACTCTTCATTTAGGTTTTCCCGGGAGTATTGCCAGTCTTTGGCAGCAAGCCGGTCGGTCTGGAAGGCGACAAAAGCCCTCTCTTGCTGTATATGTTGCCTTTCTCGGCCCGCTTGACCAATACTACATGAGCTTTCCGGACAAACTCTTTGGTAGCCCAATTGAGTGTTGCCATATTGATTCTCAAAATAAGCATGTCCTTATGCAACATTTGGCTTGTGCTGCTCTTGAGCATCCGTTGAGCTTACAATATGATCAACAGCACTTTGGTTCTGGCTTAAGCGACCCTCTTGCTGAGCTCAGGAACAAAGGATTCTTGAGTTTTGATCCATCCCGTGATTCTTCTTCTAGAATATGGAACTATATTGGTCGAGAGAAAAATCCTGCGAGGATAGTCTCTATACGGGCCATAGAGACAGTAAGATACAGAGTCATGGAAAAAAAAAGTAAAGATGTTCTCGATGAAATCGAGGAAAGCAAAGCGTTTTTCCACGTATATGAAGGAGCTATTTATATGAACCAAGGAAGGAACTACCTGGTCACGAGTCTGGATATAAAAGAAAAGGTAGCTCTGTGTGAACTAGTAAACGTGGATTACTACACCAGGACTCGGGATTACACTGATATCAAAGTAACTGGTGGTGACACTGCTTACCCGGTCAAGGCTCCAAAGAAGCCAACACCACAAACTCATGCATGTAGAGTGACAACAAAGTGGTTTGGATTTCTTCGTATCCGAAGAAGAAACAATGAAGTAATTGATGATGTTGAGCTTTCACTCCCAAGTTACACTTACCAATCACAGGCTGTTTGGATTCAAGTGCCGATGTCGGTAAAACTAGCAGTGGAGACGGCAAACTTGCCATTCCGTGCTGGTTTACACGCAGCTTGTCACGCCCTTGTCAACGTTGTTCCAACAAGAGTGACATGCAACTATTCAGACATAGCTCCAGAATGTCCAAATCCGCAAGAGCAACGGTATTTCCCAGCAAGAATCTTAGTATATGATCGTCATCCTGGAGGAACTGGCATATCCGCCAAGATCTGTCCGCTCTTCTTTGAGCTTCTAAAAGATGCTCGTGATCTCTTAAGGTCTTGCGAAAAATGCCCACCTGAAACTGGTTGCCCCAAGTGCGCTCAGACTTTTGGTTGCCGAGGGTACAATGAACTCCTACATAAGAAAGCAGCCATCATGATCATGCAGGGCGTTTTGGACGCGAAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000217 GO:0000405 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030554 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0034641 GO:0034644 GO:0035639 GO:0035861 GO:0036094 GO:0036297 GO:0042623 GO:0043138 GO:0043140 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0070914 GO:0071103 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0104004 GO:0140097 GO:0140098 GO:1901255 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF1998 Helicase_C

Protein Analysis

1141

Amino Acids

126.46

Weight (kDa)

8.57

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	393 - 530	9.3e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	396 - 567	3.5e-31	DEAD/DEAH box helicase
Helicase_C	PF00271	649 - 755	9.5e-11	Helicase conserved C-terminal domain
WHD_HRQ1	PF22982	791 - 869	7.7e-14	ATP-dependent helicase HRQ1, winged helix domain
MZB	PF09369	1028 - 1110	7.9e-17	MrfA Zn-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08110 AT5G08110 AT5G08110
fragaria_vesca	FvH4_5g13410 FvH4_5g13410
malus_domestica	MD14G1216300.v1.1
prunus_persica	Prupe.5G209300_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1 Prupe.5G209800_v2.0.a1
pyrus_communis	pycom14g17910
rosa_chinensis	RchiOBHm_Chr7g0183711
rosa_laevigata	RLG00000005031
rosa_multiflora	Rmu_sc0003610.1_g000027
rosa_roxburghii	Rroxscaffold_3G00270310
rosa_rugosa	Rorug06G0459500 Rorug06G0459500
rosa_samantha	Rh7AG060200 Rh7BG060400 Rh7CG062000 Rh7DG060300
rosa_wichuraiana	Rw7G005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2235
AccBSI	CCGCTC	1 cut(s)	3247
AccI	GTMKAC	2 cut(s)	628, 1419
AccII	CGCG	1 cut(s)	3413
AccIII	TCCGGA	1 cut(s)	2332
AciI	CCGC	9 cut(s)	21, 24, 144, 1235, 1639, 2306, 3161, 3231, 3245
AclI	AACGTT	1 cut(s)	3102
AclWI	GGATC	4 cut(s)	372, 1066, 1365, 2516
AcsI	RAATTY	6 cut(s)	759, 899, 983, 1009, 1312, 2025
AcuI	CTGAAG	2 cut(s)	1218, 1941
AcvI	CACGTG	1 cut(s)	2021
AfaI	GTAC	3 cut(s)	1328, 1562, 3356
AfiI	CCNNNNNNNGG	8 cut(s)	96, 971, 2050, 2235, 2805, 2857, 2998, 3314
AflII	CTTAAG	2 cut(s)	2473, 3283
AflIII	ACRYGT	1 cut(s)	2018
AhdI	GACNNNNNGTC	1 cut(s)	996
AhlI	ACTAGT	1 cut(s)	2776
AjnI	CCWGG	5 cut(s)	500, 520, 2730, 2798, 3211
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AleI	CACNNNNGTG	1 cut(s)	206
AloI	GAACNNNNNNTCC	6 cut(s)	21, 53, 606, 638, 1059, 1091
Alw21I	GWGCWC	3 cut(s)	1649, 1746, 2496
Alw26I	GTCTC	7 cut(s)	7, 24, 1175, 2030, 2596, 2603, 3038
AlwI	GGATC	4 cut(s)	372, 1066, 1365, 2516
AlwNI	CAGNNNCTG	1 cut(s)	1919
Ama87I	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
Aor13HI	TCCGGA	1 cut(s)	2332
AoxI	GGCC	6 cut(s)	1095, 1344, 1614, 1909, 2302, 2601
ApoI	RAATTY	6 cut(s)	759, 899, 983, 1009, 1312, 2025
ArsI	GACNNNNNNTTYG	2 cut(s)	2327, 2359
AseI	ATTAAT	1 cut(s)	225
Asp700I	GAANNNNTTC	2 cut(s)	1771, 2004
AspLEI	GCGC	1 cut(s)	3332
AspS9I	GGNCC	6 cut(s)	1595, 1615, 1910, 2095, 2303, 2601
AsuC2I	CCSGG	4 cut(s)	598, 2217, 2218, 2852
AsuHPI	GGTGA	6 cut(s)	194, 245, 389, 872, 1439, 2849
AsuII	TTCGAA	1 cut(s)	1395
AvaI	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
AvaII	GGWCC	2 cut(s)	1595, 2095
AxyI	CCTNAGG	1 cut(s)	1556
BanII	GRGCYC	2 cut(s)	1746, 2496
BauI	CACGAG	2 cut(s)	2737, 3273
BbrPI	CACGTG	1 cut(s)	2021
BbsI	GAAGAC	1 cut(s)	1636
Bbv12I	GWGCWC	3 cut(s)	1649, 1746, 2496
BbvCI	CCTCAGC	4 cut(s)	360, 486, 1457, 2091
BceAI	ACGGC	2 cut(s)	79, 3063
BcgI	CGANNNNNNTGC	6 cut(s)	1698, 1732, 2231, 2265, 2468, 2502
BciT130I	CCWGG	5 cut(s)	502, 522, 2732, 2800, 3213
BciVI	GTATCC	1 cut(s)	2939
BclI	TGATCA	3 cut(s)	1479, 2449, 3390
BcnI	CCSGG	4 cut(s)	598, 2217, 2218, 2852
BcoDI	GTCTC	7 cut(s)	7, 24, 1175, 2030, 2596, 2603, 3038
BcuI	ACTAGT	1 cut(s)	2776
BfaI	CTAG	7 cut(s)	204, 939, 1470, 2030, 2544, 2777, 3035
BfmI	CTRYAG	2 cut(s)	708, 1869
BfrI	CTTAAG	2 cut(s)	2473, 3283
BfuI	GTATCC	1 cut(s)	2939
BglII	AGATCT	1 cut(s)	3237
BlpI	GCTNAGC	1 cut(s)	2490
Bme1390I	CCNGG	9 cut(s)	502, 522, 598, 2217, 2218, 2732, 2800, 2852, 3213
Bme18I	GGWCC	2 cut(s)	1595, 2095
BmeRI	GACNNNNNGTC	1 cut(s)	996
BmeT110I	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
BmgT120I	GGNCC	6 cut(s)	1595, 1615, 1910, 2095, 2303, 2601
BmiI	GGNNCC	1 cut(s)	2862
BmrFI	CCNGG	9 cut(s)	502, 522, 598, 2217, 2218, 2732, 2800, 2852, 3213
BmsI	GCATC	3 cut(s)	442, 2437, 3259
BpiI	GAAGAC	1 cut(s)	1636
BpmI	CTGGAG	6 cut(s)	504, 633, 749, 1905, 3129, 3234
Bpu10I	CCTNAGC	7 cut(s)	360, 486, 1348, 1353, 1457, 2091, 2495
Bpu1102I	GCTNAGC	1 cut(s)	2490
Bpu14I	TTCGAA	1 cut(s)	1395
BpuEI	CTTGAG	4 cut(s)	334, 2183, 2444, 2533
BpuMI	CCSGG	4 cut(s)	598, 2217, 2218, 2852
Bsa29I	ATCGAT	1 cut(s)	2190
BsaAI	YACGTR	2 cut(s)	2021, 2689
BsaBI	GATNNNNATC	1 cut(s)	3207
BsaI	GGTCTC	1 cut(s)	1175
BsaJI	CCNNGG	7 cut(s)	663, 882, 1215, 1341, 2216, 2716, 3349
BsaWI	WCCGGW	2 cut(s)	2097, 2332
BsaXI	ACNNNNNCTCC	8 cut(s)	21, 51, 428, 458, 606, 636, 1878, 1908
Bsc4I	CCNNNNNNNGG	8 cut(s)	96, 971, 2050, 2235, 2805, 2857, 2998, 3314
Bse118I	RCCGGY	1 cut(s)	2246
Bse1I	ACTGG	7 cut(s)	906, 1254, 1283, 2229, 2836, 3226, 3319
Bse21I	CCTNAGG	1 cut(s)	1556
Bse3DI	GCAATG	3 cut(s)	1714, 2085, 2142
Bse8I	GATNNNNATC	1 cut(s)	3207
BseAI	TCCGGA	1 cut(s)	2332
BseBI	CCWGG	5 cut(s)	502, 522, 2732, 2800, 3213
BseCI	ATCGAT	1 cut(s)	2190
BseDI	CCNNGG	7 cut(s)	663, 882, 1215, 1341, 2216, 2716, 3349
BseGI	GGATG	5 cut(s)	400, 742, 2428, 2525, 3208
BseJI	GATNNNNATC	1 cut(s)	3207
BseLI	CCNNNNNNNGG	8 cut(s)	96, 971, 2050, 2235, 2805, 2857, 2998, 3314
BseMI	GCAATG	3 cut(s)	1714, 2085, 2142
BseNI	ACTGG	7 cut(s)	906, 1254, 1283, 2229, 2836, 3226, 3319
BseRI	GAGGAG	3 cut(s)	42, 1474, 1803
BseYI	CCCAGC	3 cut(s)	947, 1912, 3181
Bsh1236I	CGCG	1 cut(s)	3413
Bsh1285I	CGRYCG	2 cut(s)	78, 2251
BshFI	GGCC	6 cut(s)	1097, 1346, 1616, 1911, 2304, 2603
BshVI	ATCGAT	1 cut(s)	2190
BsiEI	CGRYCG	2 cut(s)	78, 2251
BsiHKAI	GWGCWC	3 cut(s)	1649, 1746, 2496
BsiHKCI	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
BsiSI	CCGG	7 cut(s)	598, 1540, 2098, 2217, 2247, 2333, 2852
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	8 cut(s)	96, 971, 2050, 2235, 2805, 2857, 2998, 3314
BsmAI	GTCTC	7 cut(s)	7, 24, 1175, 2030, 2596, 2603, 3038
BsmBI	CGTCTC	2 cut(s)	7, 3038
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	6 cut(s)	1097, 1346, 1616, 1911, 2304, 2603
Bso31I	GGTCTC	1 cut(s)	1175
BsoBI	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
Bsp119I	TTCGAA	1 cut(s)	1395
Bsp1286I	GDGCHC	3 cut(s)	1649, 1746, 2496
Bsp13I	TCCGGA	1 cut(s)	2332
Bsp1720I	GCTNAGC	1 cut(s)	2490
BspACI	CCGC	9 cut(s)	21, 24, 144, 1235, 1639, 2306, 3161, 3231, 3245
BspANI	GGCC	6 cut(s)	1097, 1346, 1616, 1911, 2304, 2603
BspDI	ATCGAT	1 cut(s)	2190
BspEI	TCCGGA	1 cut(s)	2332
BspFNI	CGCG	1 cut(s)	3413
BspHI	TCATGA	1 cut(s)	3387
BspLI	GGNNCC	1 cut(s)	2862
BspMAI	CTGCAG	1 cut(s)	1873
BspPI	GGATC	4 cut(s)	372, 1066, 1365, 2516
BspQI	GCTCTTC	2 cut(s)	910, 3254
BspT104I	TTCGAA	1 cut(s)	1395
BspTI	CTTAAG	2 cut(s)	2473, 3283
BspTNI	GGTCTC	1 cut(s)	1175
BsrBI	CCGCTC	1 cut(s)	3247
BsrDI	GCAATG	3 cut(s)	1714, 2085, 2142
BsrFI	RCCGGY	1 cut(s)	2246
BsrI	ACTGG	7 cut(s)	906, 1254, 1283, 2229, 2836, 3226, 3319
BssAI	RCCGGY	1 cut(s)	2246
BssECI	CCNNGG	7 cut(s)	663, 882, 1215, 1341, 2216, 2716, 3349
BssNAI	GTATAC	2 cut(s)	629, 1420
BssSI	CACGAG	2 cut(s)	2737, 3273
BssT1I	CCWWGG	5 cut(s)	663, 882, 1215, 1341, 2716
Bst1107I	GTATAC	2 cut(s)	629, 1420
Bst2BI	CACGAG	2 cut(s)	2737, 3273
Bst2UI	CCWGG	5 cut(s)	502, 522, 2732, 2800, 3213
Bst4CI	ACNGT	5 cut(s)	35, 79, 233, 2614, 3174
Bst6I	CTCTTC	4 cut(s)	157, 910, 2205, 3254
BstAFI	CTTAAG	2 cut(s)	2473, 3283
BstAPI	GCANNNNNTGC	1 cut(s)	1697
BstBAI	YACGTR	2 cut(s)	2021, 2689
BstBI	TTCGAA	1 cut(s)	1395
BstC8I	GCNNGC	6 cut(s)	483, 893, 1402, 1728, 2244, 2306
BstF5I	GGATG	5 cut(s)	400, 742, 2428, 2525, 3208
BstFNI	CGCG	1 cut(s)	3413
BstHHI	GCGC	1 cut(s)	3332
BstMAI	GTCTC	7 cut(s)	7, 24, 1175, 2030, 2596, 2603, 3038
BstMCI	CGRYCG	2 cut(s)	78, 2251
BstNI	CCWGG	5 cut(s)	502, 522, 2732, 2800, 3213
BstNSI	RCATGY	3 cut(s)	2393, 2895, 3126
BstSCI	CCNGG	9 cut(s)	500, 520, 596, 2215, 2216, 2730, 2798, 2850, 3211
BstSFI	CTRYAG	2 cut(s)	708, 1869
BstUI	CGCG	1 cut(s)	3413
BstV2I	GAAGAC	1 cut(s)	1636
BstX2I	RGATCY	2 cut(s)	1058, 3237
BstYI	RGATCY	2 cut(s)	1058, 3237
BstZ17I	GTATAC	2 cut(s)	629, 1420
Bsu15I	ATCGAT	1 cut(s)	2190
Bsu36I	CCTNAGG	1 cut(s)	1556
BsuI	GTATCC	1 cut(s)	2939
BsuRI	GGCC	6 cut(s)	1097, 1346, 1616, 1911, 2304, 2603
BsuTUI	ATCGAT	1 cut(s)	2190
BtsCI	GGATG	5 cut(s)	400, 742, 2428, 2525, 3208
BtsI	GCAGTG	4 cut(s)	1013, 1686, 2841, 3045
BtsIMutI	CAGTG	9 cut(s)	40, 672, 913, 1013, 1261, 1686, 2814, 2841, 3045
Cac8I	GCNNGC	6 cut(s)	483, 893, 1402, 1728, 2244, 2306
CaiI	CAGNNNCTG	1 cut(s)	1919
CciI	TCATGA	1 cut(s)	3387
CfoI	GCGC	1 cut(s)	3332
Cfr10I	RCCGGY	1 cut(s)	2246
Cfr13I	GGNCC	6 cut(s)	1595, 1615, 1910, 2095, 2303, 2601
Cfr9I	CCCGGG	1 cut(s)	2216
ClaI	ATCGAT	1 cut(s)	2190
CseI	GACGC	3 cut(s)	24, 1505, 3419
CsiI	ACCWGGT	1 cut(s)	2730
Csp6I	GTAC	3 cut(s)	1327, 1561, 3355
CviQI	GTAC	3 cut(s)	1327, 1561, 3355
DraI	TTTAAA	1 cut(s)	495
DriI	GACNNNNNGTC	1 cut(s)	996
Eam1104I	CTCTTC	4 cut(s)	157, 910, 2205, 3254
Eam1105I	GACNNNNNGTC	1 cut(s)	996
EarI	CTCTTC	4 cut(s)	157, 910, 2205, 3254
EciI	GGCGGA	2 cut(s)	39, 3220
Ecl136II	GAGCTC	2 cut(s)	1744, 2494
Eco130I	CCWWGG	5 cut(s)	663, 882, 1215, 1341, 2716
Eco147I	AGGCCT	1 cut(s)	1346
Eco24I	GRGCYC	2 cut(s)	1746, 2496
Eco31I	GGTCTC	1 cut(s)	1175
Eco32I	GATATC	2 cut(s)	238, 2821
Eco47I	GGWCC	2 cut(s)	1595, 2095
Eco53kI	GAGCTC	2 cut(s)	1744, 2494
Eco57I	CTGAAG	2 cut(s)	1218, 1941
Eco72I	CACGTG	1 cut(s)	2021
Eco81I	CCTNAGG	1 cut(s)	1556
Eco88I	CYCGRG	4 cut(s)	1707, 1745, 2216, 2805
EcoICRI	GAGCTC	2 cut(s)	1744, 2494
EcoRII	CCWGG	5 cut(s)	500, 520, 2730, 2798, 3211
EcoRV	GATATC	2 cut(s)	238, 2821
EcoT14I	CCWWGG	5 cut(s)	663, 882, 1215, 1341, 2716
EcoT22I	ATGCAT	2 cut(s)	457, 2893
EcoT38I	GRGCYC	2 cut(s)	1746, 2496
ErhI	CCWWGG	5 cut(s)	663, 882, 1215, 1341, 2716
Esp3I	CGTCTC	2 cut(s)	7, 3038
FalI	AAGNNNNNCTT	6 cut(s)	547, 579, 1139, 1171, 2971, 3003
FaqI	GGGAC	1 cut(s)	112
FauI	CCCGC	2 cut(s)	151, 2313
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	3 cut(s)	1479, 2449, 3390
FblI	GTMKAC	2 cut(s)	628, 1419
FokI	GGATG	5 cut(s)	407, 749, 2415, 2512, 3195
FriOI	GRGCYC	2 cut(s)	1746, 2496
FspBI	CTAG	7 cut(s)	204, 939, 1470, 2030, 2544, 2777, 3035
GlaI	GCGC	1 cut(s)	3331
GsaI	CCCAGC	3 cut(s)	951, 1916, 3185
GsuI	CTGGAG	6 cut(s)	504, 633, 749, 1905, 3129, 3234
HaeIII	GGCC	6 cut(s)	1097, 1346, 1616, 1911, 2304, 2603
HapII	CCGG	7 cut(s)	598, 1540, 2098, 2217, 2247, 2333, 2852
HgaI	GACGC	3 cut(s)	24, 1505, 3419
HhaI	GCGC	1 cut(s)	3332
Hin6I	GCGC	1 cut(s)	3330
HinP1I	GCGC	1 cut(s)	3330
HincII	GTYRAC	1 cut(s)	3100
HindII	GTYRAC	1 cut(s)	3100
HindIII	AAGCTT	3 cut(s)	479, 1784, 2132
HpaII	CCGG	7 cut(s)	598, 1540, 2098, 2217, 2247, 2333, 2852
HphI	GGTGA	6 cut(s)	194, 245, 389, 872, 1439, 2849
Hpy166II	GTNNAC	9 cut(s)	629, 694, 1078, 1420, 2000, 2774, 2782, 3074, 3100
Hpy8I	GTNNAC	9 cut(s)	629, 694, 1078, 1420, 2000, 2774, 2782, 3074, 3100
Hpy99I	CGWCG	3 cut(s)	76, 1118, 1521
HpyAV	CCTTC	9 cut(s)	259, 315, 905, 1680, 1782, 2253, 2690, 2715, 3409
HpyCH4III	ACNGT	5 cut(s)	35, 79, 233, 2614, 3174
HpyCH4IV	ACGT	9 cut(s)	636, 1080, 1113, 1278, 1963, 2020, 2688, 2784, 3102
HpySE526I	ACGT	9 cut(s)	636, 1080, 1113, 1278, 1963, 2020, 2688, 2784, 3102
HspAI	GCGC	1 cut(s)	3330
Kpn2I	TCCGGA	1 cut(s)	2332
Ksp22I	TGATCA	3 cut(s)	1479, 2449, 3390
LguI	GCTCTTC	2 cut(s)	910, 3254
LmnI	GCTCC	6 cut(s)	1723, 1816, 1886, 2699, 2866, 3148
LweI	GCATC	3 cut(s)	442, 2437, 3259
MabI	ACCWGGT	1 cut(s)	2730
MaeI	CTAG	7 cut(s)	204, 939, 1470, 2030, 2544, 2777, 3035
MaeII	ACGT	9 cut(s)	636, 1080, 1113, 1278, 1963, 2020, 2688, 2784, 3102
MbiI	CCGCTC	1 cut(s)	3247
MfeI	CAATTG	1 cut(s)	2355
MflI	RGATCY	2 cut(s)	1058, 3237
MhlI	GDGCHC	3 cut(s)	1649, 1746, 2496
MlyI	GAGTC	6 cut(s)	274, 446, 836, 2634, 2749, 2797
MmeI	TCCRAC	3 cut(s)	1361, 1841, 3134
Mph1103I	ATGCAT	2 cut(s)	457, 2893
MroI	TCCGGA	1 cut(s)	2332
MroXI	GAANNNNTTC	2 cut(s)	1771, 2004
MslI	CAYNNNNRTG	6 cut(s)	206, 1409, 1656, 2190, 2691, 3392
MspA1I	CMGCKG	1 cut(s)	21
MspCI	CTTAAG	2 cut(s)	2473, 3283
MspI	CCGG	7 cut(s)	598, 1540, 2098, 2217, 2247, 2333, 2852
MspR9I	CCNGG	9 cut(s)	502, 522, 598, 2217, 2218, 2732, 2800, 2852, 3213
MunI	CAATTG	1 cut(s)	2355
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	5 cut(s)	502, 522, 2732, 2800, 3213
MvnI	CGCG	1 cut(s)	3413
NciI	CCSGG	4 cut(s)	598, 2217, 2218, 2852
NdeI	CATATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	2862
NmeAIII	GCCGAG	2 cut(s)	2280, 3374
NmuCI	GTSAC	7 cut(s)	107, 2183, 2734, 2837, 2899, 3086, 3118
NsiI	ATGCAT	2 cut(s)	457, 2893
NspI	RCATGY	3 cut(s)	2393, 2895, 3126
NspV	TTCGAA	1 cut(s)	1395
OliI	CACNNNNGTG	1 cut(s)	206
PaeR7I	CTCGAG	2 cut(s)	1707, 1745
PagI	TCATGA	1 cut(s)	3387
PceI	AGGCCT	1 cut(s)	1346
PciSI	GCTCTTC	2 cut(s)	910, 3254
PcsI	WCGNNNNNNNCGW	1 cut(s)	2661
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	1771, 2004
PflMI	CCANNNNNTGG	1 cut(s)	2235
PfoI	TCCNGGA	2 cut(s)	500, 3211
PleI	GAGTC	6 cut(s)	274, 445, 835, 2633, 2748, 2797
PmaCI	CACGTG	1 cut(s)	2021
PmlI	CACGTG	1 cut(s)	2021
PpsI	GAGTC	6 cut(s)	274, 445, 835, 2633, 2748, 2797
Ppu21I	YACGTR	2 cut(s)	2021, 2689
PshBI	ATTAAT	1 cut(s)	225
Psp124BI	GAGCTC	2 cut(s)	1746, 2496
Psp1406I	AACGTT	1 cut(s)	3102
Psp6I	CCWGG	5 cut(s)	500, 520, 2730, 2798, 3211
PspCI	CACGTG	1 cut(s)	2021
PspFI	CCCAGC	3 cut(s)	947, 1912, 3181
PspGI	CCWGG	5 cut(s)	500, 520, 2730, 2798, 3211
PspN4I	GGNNCC	1 cut(s)	2862
PspPI	GGNCC	6 cut(s)	1595, 1615, 1910, 2095, 2303, 2601
PspXI	VCTCGAGB	1 cut(s)	1745
PstI	CTGCAG	1 cut(s)	1873
PstNI	CAGNNNCTG	1 cut(s)	1919
PsuI	RGATCY	2 cut(s)	1058, 3237
RsaI	GTAC	3 cut(s)	1328, 1562, 3356
RsaNI	GTAC	3 cut(s)	1327, 1561, 3355
RseI	CAYNNNNRTG	6 cut(s)	206, 1409, 1656, 2190, 2691, 3392
SacI	GAGCTC	2 cut(s)	1746, 2496
SapI	GCTCTTC	2 cut(s)	910, 3254
Sau96I	GGNCC	6 cut(s)	1595, 1615, 1910, 2095, 2303, 2601
SchI	GAGTC	6 cut(s)	274, 446, 836, 2634, 2749, 2797
ScrFI	CCNGG	9 cut(s)	502, 522, 598, 2217, 2218, 2732, 2800, 2852, 3213
SduI	GDGCHC	3 cut(s)	1649, 1746, 2496
SexAI	ACCWGGT	1 cut(s)	2730
SfaNI	GCATC	3 cut(s)	442, 2437, 3259
SfcI	CTRYAG	2 cut(s)	708, 1869
Sfr274I	CTCGAG	2 cut(s)	1707, 1745
SfuI	TTCGAA	1 cut(s)	1395
SinI	GGWCC	2 cut(s)	1595, 2095
SlaI	CTCGAG	2 cut(s)	1707, 1745
SmaI	CCCGGG	1 cut(s)	2218
SmiMI	CAYNNNNRTG	6 cut(s)	206, 1409, 1656, 2190, 2691, 3392
SmlI	CTYRAG	8 cut(s)	313, 1707, 1745, 2162, 2423, 2473, 2512, 3283
SmoI	CTYRAG	8 cut(s)	313, 1707, 1745, 2162, 2423, 2473, 2512, 3283
SpeI	ACTAGT	1 cut(s)	2776
SseBI	AGGCCT	1 cut(s)	1346
SsiI	CCGC	9 cut(s)	21, 24, 144, 1235, 1639, 2306, 3161, 3231, 3245
SspMI	CTAG	7 cut(s)	204, 939, 1470, 2030, 2544, 2777, 3035
SstI	GAGCTC	2 cut(s)	1746, 2496
StuI	AGGCCT	1 cut(s)	1346
StyD4I	CCNGG	9 cut(s)	500, 520, 596, 2215, 2216, 2730, 2798, 2850, 3211
StyI	CCWWGG	5 cut(s)	663, 882, 1215, 1341, 2716
TaaI	ACNGT	5 cut(s)	35, 79, 233, 2614, 3174
TaiI	ACGT	9 cut(s)	639, 1083, 1116, 1281, 1966, 2023, 2691, 2787, 3105
TaqII	GACCGA	1 cut(s)	2241
TatI	WGTACW	1 cut(s)	1326
TauI	GCSGC	2 cut(s)	24, 1641
TscAI	CASTG	9 cut(s)	40, 679, 913, 1020, 1261, 1693, 2821, 2848, 3045
TseFI	GTSAC	7 cut(s)	107, 2183, 2734, 2837, 2899, 3086, 3118
Tsp45I	GTSAC	7 cut(s)	107, 2183, 2734, 2837, 2899, 3086, 3118
TspGWI	ACGGA	3 cut(s)	243, 2421, 3053
TspMI	CCCGGG	1 cut(s)	2216
TspRI	CASTG	9 cut(s)	40, 679, 913, 1020, 1261, 1693, 2821, 2848, 3045
Van91I	CCANNNNNTGG	1 cut(s)	2235
Vha464I	CTTAAG	2 cut(s)	2473, 3283
VpaK11BI	GGWCC	2 cut(s)	1595, 2095
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	6 cut(s)	759, 899, 983, 1009, 1312, 2025
XbaI	TCTAGA	1 cut(s)	2543
XceI	RCATGY	3 cut(s)	2393, 2895, 3126
XhoI	CTCGAG	2 cut(s)	1707, 1745
XmaI	CCCGGG	1 cut(s)	2216
XmiI	GTMKAC	2 cut(s)	628, 1419
XmnI	GAANNNNTTC	2 cut(s)	1771, 2004
XspI	CTAG	7 cut(s)	204, 939, 1470, 2030, 2544, 2777, 3035
Zsp2I	ATGCAT	2 cut(s)	457, 2893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.