Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

2625559 .. 2628205

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCTGTTCGTTTTCAGGATTGAACGCACTTTACGACGCCGTCAACGGTGGAGGTGACGTATGGATCAATGAGAATCGATTCAGGATCGTGAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTGGTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAAGTCAAGGATCCGGCTCATCTCTCCGCTGACGGAACTTATGCTATGAAGAAAGTTTTGATTCAGAACAAGGAGCAATTGGAATTGGTGCGTGAGGAGATCCGTGTTTCTTCATTGTTCAATCACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAGGGAGCTTGGAAACACGAGGCCTTCTTGCTGTTTCCTGTTCACTTGGATGGGACCTTGCTGGATAATTTCACTTTGATGAAGGCTAAAAAAGAAACTTTCTCAACAACTGATGTTTTGCACATATTCCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCCACCATATGCTCACAACGATGTCAAACCTGGCAACGTCCTTTTAACACGTAGAAAAGGACAGCCTCCTCTTGCGATATTGATGGACTTTGGAAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAAGAGGCCTTACAGTTACAGGAATGGACATCTGAGCATTGCTCAGCACCGTTTCGAGCTCCCGAGCTCTGGGATTGCCCAAGCCATGCTGATATTGATGAGAGAACAGATATCTGGTCACTAGGCTGCACATTATATGCAATAATGTATGGTGTGTCTCCATTCGAGTATGCGCTTGGAGAATCTGGTGGAAGTCTTCAGCTTGCAATCGTGAACGCTCAGATCAAATGGCCAAACACTGGACCAAAAGCTTCTTACCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAAGCTGCTGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAATTGATCGCTAAATTCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

347

Amino Acids

38.64

Weight (kDa)

6.67

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	59 - 337	6e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 334	2.1e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	1014
AccII	CGCG	1 cut(s)	988
AciI	CCGC	4 cut(s)	162, 165, 216, 986
AclWI	GGATC	5 cut(s)	74, 95, 194, 207, 283
AcoI	YGGCCR	2 cut(s)	364, 899
AcsI	RAATTY	1 cut(s)	1031
AcuI	CTGAAG	2 cut(s)	851, 951
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	673, 738, 908
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	25, 310
AjnI	CCWGG	1 cut(s)	568
Alw21I	GWGCWC	3 cut(s)	640, 730, 738
Alw26I	GTCTC	1 cut(s)	831
AlwI	GGATC	5 cut(s)	74, 95, 194, 207, 283
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	4 cut(s)	364, 390, 675, 899
ApeKI	GCWGC	4 cut(s)	97, 795, 961, 974
ApoI	RAATTY	1 cut(s)	1031
Asp700I	GAANNNNTTC	2 cut(s)	80, 936
AspLEI	GCGC	2 cut(s)	844, 990
AspS9I	GGNCC	2 cut(s)	423, 911
AsuHPI	GGTGA	4 cut(s)	68, 305, 932, 1027
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	423, 911
BalI	TGGCCA	1 cut(s)	901
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	730, 738
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	3 cut(s)	640, 730, 738
BbvI	GCAGC	4 cut(s)	109, 782, 948, 961
BccI	CCATC	4 cut(s)	413, 506, 616, 652
BceAI	ACGGC	2 cut(s)	26, 379
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	2 cut(s)	182, 791
BisI	GCNGC	5 cut(s)	98, 165, 796, 962, 975
BlpI	GCTNAGC	1 cut(s)	712
BlsI	GCNGC	5 cut(s)	99, 166, 797, 963, 976
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	2 cut(s)	423, 911
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	423, 911
BmiI	GGNNCC	3 cut(s)	201, 424, 540
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	2 cut(s)	176, 948
BpiI	GAAGAC	1 cut(s)	857
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	712
Bsa29I	ATCGAT	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 738, 908
Bse1I	ACTGG	2 cut(s)	913, 943
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	570
BseCI	ATCGAT	1 cut(s)	79
BseGI	GGATG	4 cut(s)	167, 424, 963, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	673, 738, 908
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	3 cut(s)	693, 726, 902
BseNI	ACTGG	2 cut(s)	913, 943
BseRI	GAGGAG	2 cut(s)	299, 597
BseXI	GCAGC	4 cut(s)	109, 782, 948, 961
BsgI	GTGCAG	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	988
Bsh1285I	CGRYCG	1 cut(s)	986
BshFI	GGCC	4 cut(s)	366, 392, 677, 901
BshVI	ATCGAT	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	986
BsiHKAI	GWGCWC	3 cut(s)	640, 730, 738
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	171, 203
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	673, 738, 908
BsmAI	GTCTC	1 cut(s)	831
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	366, 392, 677, 901
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	3 cut(s)	640, 730, 738
Bsp143I	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
Bsp1720I	GCTNAGC	1 cut(s)	712
BspACI	CCGC	4 cut(s)	162, 165, 216, 986
BspANI	GGCC	4 cut(s)	366, 392, 677, 901
BspCNI	CTCAG	3 cut(s)	694, 725, 901
BspDI	ATCGAT	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	988
BspLI	GGNNCC	3 cut(s)	201, 424, 540
BspPI	GGATC	5 cut(s)	74, 95, 194, 207, 283
BspQI	GCTCTTC	1 cut(s)	942
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	913, 943
BssMI	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	50, 684, 720
Bst6I	CTCTTC	1 cut(s)	942
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	640, 873
BstDEI	CTNAG	4 cut(s)	186, 702, 712, 888
BstF5I	GGATG	4 cut(s)	167, 424, 963, 1005
BstFNI	CGCG	1 cut(s)	988
BstHHI	GCGC	2 cut(s)	844, 990
BstKTI	GATC	7 cut(s)	69, 90, 202, 291, 340, 894, 1026
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
BstMCI	CGRYCG	1 cut(s)	986
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	4 cut(s)	109, 782, 948, 961
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	2 cut(s)	199, 288
BstYI	RGATCY	2 cut(s)	199, 288
Bsu15I	ATCGAT	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	366, 392, 677, 901
BsuTUI	ATCGAT	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	167, 424, 963, 1005
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	2 cut(s)	640, 873
CfoI	GCGC	2 cut(s)	844, 990
Cfr13I	GGNCC	2 cut(s)	423, 911
ClaI	ATCGAT	1 cut(s)	79
CseI	GACGC	2 cut(s)	47, 161
CviAII	CATG	4 cut(s)	341, 526, 755, 1010
DdeI	CTNAG	4 cut(s)	186, 702, 712, 888
DpnI	GATC	7 cut(s)	68, 89, 201, 290, 339, 893, 1025
DpnII	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
EaeI	YGGCCR	2 cut(s)	364, 899
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	2 cut(s)	728, 736
Eco147I	AGGCCT	2 cut(s)	392, 677
Eco24I	GRGCYC	2 cut(s)	730, 738
Eco32I	GATATC	2 cut(s)	781, 1000
Eco47I	GGWCC	2 cut(s)	423, 911
Eco53kI	GAGCTC	2 cut(s)	728, 736
Eco57I	CTGAAG	2 cut(s)	851, 951
Eco88I	CYCGRG	1 cut(s)	731
EcoICRI	GAGCTC	2 cut(s)	728, 736
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	568
EcoRV	GATATC	2 cut(s)	781, 1000
EcoT38I	GRGCYC	2 cut(s)	730, 738
FaeI	CATG	4 cut(s)	344, 529, 758, 1013
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	4 cut(s)	340, 525, 754, 1009
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	5 cut(s)	98, 165, 796, 962, 975
FokI	GGATG	4 cut(s)	154, 431, 970, 992
FriOI	GRGCYC	2 cut(s)	730, 738
Fsp4HI	GCNGC	5 cut(s)	98, 165, 796, 962, 975
FspBI	CTAG	2 cut(s)	182, 791
GlaI	GCGC	2 cut(s)	843, 989
GluI	GCNGC	5 cut(s)	98, 165, 796, 962, 975
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	4 cut(s)	366, 392, 677, 901
HapII	CCGG	2 cut(s)	171, 203
HgaI	GACGC	2 cut(s)	47, 161
HhaI	GCGC	2 cut(s)	844, 990
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	344, 529, 758, 1013
Hin6I	GCGC	2 cut(s)	842, 988
HinP1I	GCGC	2 cut(s)	842, 988
HincII	GTYRAC	2 cut(s)	46, 1015
HindII	GTYRAC	2 cut(s)	46, 1015
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	4 cut(s)	76, 81, 250, 851
HpaII	CCGG	2 cut(s)	171, 203
HphI	GGTGA	4 cut(s)	68, 305, 932, 1027
Hpy166II	GTNNAC	4 cut(s)	46, 412, 883, 1015
Hpy188I	TCNGA	3 cut(s)	255, 703, 891
Hpy188III	TCNNGA	7 cut(s)	18, 85, 91, 536, 671, 731, 880
Hpy8I	GTNNAC	4 cut(s)	46, 412, 883, 1015
Hpy99I	CGWCG	2 cut(s)	41, 155
HpyAV	CCTTC	3 cut(s)	101, 403, 445
HpyCH4III	ACNGT	3 cut(s)	50, 684, 720
HpyCH4IV	ACGT	3 cut(s)	60, 576, 589
HpyCH4V	TGCA	6 cut(s)	490, 529, 798, 809, 875, 964
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	4 cut(s)	186, 702, 712, 888
HpySE526I	ACGT	3 cut(s)	60, 576, 589
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	344, 529, 758, 1013
HspAI	GCGC	2 cut(s)	842, 988
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	4 cut(s)	262, 374, 538, 733
Lsp1109I	GCAGC	4 cut(s)	109, 782, 948, 961
LweI	GCATC	2 cut(s)	176, 948
MaeI	CTAG	2 cut(s)	182, 791
MaeII	ACGT	3 cut(s)	60, 576, 589
MaeIII	GTNAC	4 cut(s)	56, 684, 786, 949
MalI	GATC	7 cut(s)	68, 89, 201, 290, 339, 893, 1025
MboI	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
MboII	GAAGA	4 cut(s)	250, 291, 857, 929
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	2 cut(s)	199, 288
MhlI	GDGCHC	3 cut(s)	640, 730, 738
MlsI	TGGCCA	1 cut(s)	901
MluCI	AATT	7 cut(s)	141, 266, 272, 319, 436, 1019, 1031
MluNI	TGGCCA	1 cut(s)	901
Mox20I	TGGCCA	1 cut(s)	901
MroXI	GAANNNNTTC	2 cut(s)	80, 936
MscI	TGGCCA	1 cut(s)	901
MseI	TTAA	3 cut(s)	357, 519, 584
MslI	CAYNNNNRTG	3 cut(s)	417, 446, 558
Msp20I	TGGCCA	1 cut(s)	901
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	171, 203
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
NlaIII	CATG	4 cut(s)	344, 529, 758, 1013
NlaIV	GGNNCC	3 cut(s)	201, 424, 540
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	56, 786
NspI	RCATGY	1 cut(s)	529
PceI	AGGCCT	2 cut(s)	392, 677
PciSI	GCTCTTC	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	80, 936
PfeI	GAWTC	4 cut(s)	76, 81, 250, 851
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	5 cut(s)	99, 166, 797, 963, 976
Ppu21I	YACGTR	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	423
Psp124BI	GAGCTC	2 cut(s)	730, 738
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	201, 424, 540
PspPI	GGNCC	2 cut(s)	423, 911
PspPPI	RGGWCCY	1 cut(s)	423
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PsuI	RGATCY	2 cut(s)	199, 288
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	3 cut(s)	417, 446, 558
SacI	GAGCTC	2 cut(s)	730, 738
SalI	GTCGAC	1 cut(s)	1013
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	3 cut(s)	357, 519, 584
SatI	GCNGC	5 cut(s)	98, 165, 796, 962, 975
Sau3AI	GATC	7 cut(s)	66, 87, 199, 288, 337, 891, 1023
Sau96I	GGNCC	2 cut(s)	423, 911
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	3 cut(s)	640, 730, 738
SfaNI	GCATC	2 cut(s)	176, 948
SinI	GGWCC	2 cut(s)	423, 911
SmiMI	CAYNNNNRTG	3 cut(s)	417, 446, 558
Sse9I	AATT	7 cut(s)	141, 266, 272, 319, 436, 1019, 1031
SseBI	AGGCCT	2 cut(s)	392, 677
SsiI	CCGC	4 cut(s)	162, 165, 216, 986
SspMI	CTAG	2 cut(s)	182, 791
SstI	GAGCTC	2 cut(s)	730, 738
StuI	AGGCCT	2 cut(s)	392, 677
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	50, 684, 720
TaiI	ACGT	3 cut(s)	63, 579, 592
TaqI	TCGA	5 cut(s)	79, 724, 834, 982, 1014
TasI	AATT	7 cut(s)	141, 266, 272, 319, 436, 1019, 1031
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	76, 81, 250, 851
Tru1I	TTAA	3 cut(s)	357, 519, 584
Tru9I	TTAA	3 cut(s)	357, 519, 584
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	2 cut(s)	56, 786
TseI	GCWGC	4 cut(s)	97, 795, 961, 974
Tsp45I	GTSAC	2 cut(s)	56, 786
TspDTI	ATGAA	3 cut(s)	251, 291, 464
TspGWI	ACGGA	5 cut(s)	237, 281, 488, 650, 664
TspRI	CASTG	1 cut(s)	913
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	2 cut(s)	423, 911
XapI	RAATTY	1 cut(s)	1031
XceI	RCATGY	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	1014
XmnI	GAANNNNTTC	2 cut(s)	80, 936
XspI	CTAG	2 cut(s)	182, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.