Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004712.1

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Forward (+)

42309 .. 44537

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004712.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgattgttggttctggttctggttctgatgatggaacttatgccatgaaaaaagttctcattcagaatagcgaacagctggagttggtcaaggaggagatccgagtttcatcacttttcactcatcctaatctgcttccccttcttgatcatgccattatttccgttaagcctacacaagaccaatcttggaaacatgaagcatatttattatttccagttcatctcgatggaactttactggataatgcaaaggttatgaaaactaaaaaggagttctattcaaccacagatgttcttcaaatattccggcagctttgtgcaggactcaagcacatgcacaattttgaaccaccatatgcacataatgatatcaaacccggtaatgtcctgattactcatagaaaagggcaaccacctctagccatattgatggattttggcagtgctcgacctgcaaggaaacaaattcgcactcgttctgaggcactgcagttgcaggaatgggcatctgagcattgttctgcaccatttcgagctccagagttgtgggattgcccaagccaggcagatattgacgagagaacggatatatggtctttgggatgcactttgtatgccatactgtatggagtatctccatttgaatatgcgcttggtgaatctggaggaagcctacaattggcaatagtcaatgtgcagattaagtggccagctggacctaagcctccatatccagatgctcttcatcagtttattacatggatgcttcagccacaagctgcagtccgtccacgaattgacgatatcataatacatgtggacaagttgatttcaaagttctctcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

283

Amino Acids

31.87

Weight (kDa)

6.41

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	565, 682
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	5 cut(s)	285, 302, 350, 647, 837
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	5 cut(s)	79, 316, 539, 716, 782
AluI	AGCT	5 cut(s)	79, 316, 539, 716, 782
Alw21I	GWGCWC	2 cut(s)	451, 541
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	313, 782
ApoI	RAATTY	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	541
Bbv12I	GWGCWC	2 cut(s)	451, 541
BbvI	GCAGC	2 cut(s)	325, 769
BccI	CCATC	3 cut(s)	26, 224, 427
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	381
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	2 cut(s)	491, 783
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	314, 783
BlsI	GCNGC	2 cut(s)	315, 784
Bme1390I	CCNGG	2 cut(s)	381, 566
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	381, 566
BmsI	GCATC	4 cut(s)	518, 596, 730, 756
BpmI	CTGGAG	3 cut(s)	101, 525, 687
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 682
Bse1I	ACTGG	2 cut(s)	218, 246
BseBI	CCWGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	124, 611, 771
BseLI	CCNNNNNNNGG	2 cut(s)	565, 682
BseMII	CTCAG	2 cut(s)	474, 504
BseNI	ACTGG	2 cut(s)	218, 246
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	325, 769
BsgI	GTGCAG	3 cut(s)	342, 510, 719
BshFI	GGCC	1 cut(s)	712
BsiHKAI	GWGCWC	2 cut(s)	451, 541
BsiSI	CCGG	2 cut(s)	310, 381
BslI	CCNNNNNNNGG	2 cut(s)	565, 682
BsnI	GGCC	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	451, 541
Bsp143I	GATC	2 cut(s)	99, 148
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	2 cut(s)	475, 505
BspMAI	CTGCAG	2 cut(s)	495, 787
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	218, 246
BssMI	GATC	2 cut(s)	99, 148
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	3 cut(s)	483, 513, 723
BstF5I	GGATG	3 cut(s)	124, 611, 771
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	102, 151
BstMBI	GATC	2 cut(s)	99, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	2 cut(s)	340, 821
BstSCI	CCNGG	2 cut(s)	379, 564
BstSFI	CTRYAG	2 cut(s)	491, 783
BstV1I	GCAGC	2 cut(s)	325, 769
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	2 cut(s)	433, 549
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	124, 611, 771
BtsI	GCAGTG	2 cut(s)	451, 488
BtsIMutI	CAGTG	2 cut(s)	451, 488
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	714
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	719
CviAII	CATG	6 cut(s)	46, 152, 197, 337, 762, 818
DdeI	CTNAG	3 cut(s)	483, 513, 723
DpnI	GATC	2 cut(s)	101, 150
DpnII	GATC	2 cut(s)	99, 148
EaeI	YGGCCR	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	541
Eco32I	GATATC	2 cut(s)	373, 808
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	564
EcoRV	GATATC	2 cut(s)	373, 808
EcoT38I	GRGCYC	1 cut(s)	541
FaeI	CATG	6 cut(s)	49, 155, 200, 340, 765, 821
FatI	CATG	6 cut(s)	45, 151, 196, 336, 761, 817
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	314, 783
FokI	GGATG	3 cut(s)	111, 618, 778
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	2 cut(s)	314, 783
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	2 cut(s)	314, 783
GsuI	CTGGAG	3 cut(s)	101, 525, 687
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	2 cut(s)	310, 381
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	6 cut(s)	49, 155, 200, 340, 765, 821
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HinfI	GANTC	2 cut(s)	327, 662
HpaII	CCGG	2 cut(s)	310, 381
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	2 cut(s)	794, 823
Hpy188I	TCNGA	5 cut(s)	28, 66, 104, 484, 514
Hpy188III	TCNNGA	6 cut(s)	146, 227, 391, 542, 666, 737
Hpy8I	GTNNAC	2 cut(s)	794, 823
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	3 cut(s)	483, 513, 723
Hsp92II	CATG	6 cut(s)	49, 155, 200, 340, 765, 821
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	99, 148
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	2 cut(s)	325, 769
LweI	GCATC	4 cut(s)	518, 596, 730, 756
MaeI	CTAG	1 cut(s)	422
MalI	GATC	2 cut(s)	101, 150
MboI	GATC	2 cut(s)	99, 148
MboII	GAAGA	2 cut(s)	290, 737
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	451, 541
MlsI	TGGCCA	1 cut(s)	712
MluCI	AATT	4 cut(s)	343, 468, 680, 798
MluNI	TGGCCA	1 cut(s)	712
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	88, 429, 478, 662, 738
Mox20I	TGGCCA	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	2 cut(s)	168, 705
MslI	CAYNNNNRTG	2 cut(s)	228, 431
Msp20I	TGGCCA	1 cut(s)	712
MspA1I	CMGCKG	2 cut(s)	79, 716
MspI	CCGG	2 cut(s)	310, 381
MspR9I	CCNGG	2 cut(s)	381, 566
MunI	CAATTG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	99, 148
NlaIII	CATG	6 cut(s)	49, 155, 200, 340, 765, 821
NspI	RCATGY	2 cut(s)	340, 821
PciI	ACATGT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	315, 784
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PscI	ACATGT	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	719
PstI	CTGCAG	2 cut(s)	495, 787
PsuI	RGATCY	1 cut(s)	99
PvuII	CAGCTG	2 cut(s)	79, 716
RseI	CAYNNNNRTG	2 cut(s)	228, 431
SacI	GAGCTC	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	2 cut(s)	168, 705
SatI	GCNGC	2 cut(s)	314, 783
Sau3AI	GATC	2 cut(s)	99, 148
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	381, 566
SduI	GDGCHC	2 cut(s)	451, 541
SetI	ASST	9 cut(s)	81, 258, 318, 421, 457, 541, 718, 724, 784
SfaNI	GCATC	4 cut(s)	518, 596, 730, 756
SfcI	CTRYAG	2 cut(s)	491, 783
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	228, 431
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	343, 468, 680, 798
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	541
StyD4I	CCNGG	2 cut(s)	379, 564
TaaI	ACNGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	228, 451, 535
TasI	AATT	4 cut(s)	343, 468, 680, 798
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	168, 705
Tru9I	TTAA	2 cut(s)	168, 705
TscAI	CASTG	2 cut(s)	451, 495
TseI	GCWGC	2 cut(s)	313, 782
TspDTI	ATGAA	6 cut(s)	62, 99, 212, 213, 275, 737
TspGWI	ACGGA	3 cut(s)	154, 602, 779
TspRI	CASTG	2 cut(s)	451, 495
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	2 cut(s)	340, 821
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.