Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007533.1

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

52242 .. 54038

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007533.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgccattaattcatctatcctatctactttggcagcctacacaagaccaatcttggaaacatgaagcatatttattatttccagttcatctcgatggaactttactggataatgcaaaggttatgaaaactaaaaaggagttctattcaaccacagatgttcttcaaatattccggcagctttgtgcaggactcaagcacatgcacaattttgaaccaccatatgcacataatgatatcaaacccggtaatgtcctgattactcatagaaaagggcaaccacctctagccatattgatggattttggcagtgctcgacctgcaaggaaacaaattcgcactcgttctgaggcactgcagttgcagttgcaggaatgggcatctgagcattgttctgcaccatttcgagctccagagttgtgggattgcccaagccaggcagatattgacgagagaacggatatatggtctttgggatgcactttgtatgccatactgtatggagtatctccatttgaatatgcgcttggtgaatctggaggaagcctacaattggcaatagtcaatgtgcagattaagtggccagctggacctaagcctccatatccagatgctcttcatcagtttattacatggatgcttcagccacaagctgcagtccgtccacgaattgacgatatcataatacatgtggacaagttgatttcaaagttctctcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

27.41

Weight (kDa)

6.79

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	581
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	436, 553
AflIII	ACRYGT	1 cut(s)	688
AgsI	TTSAA	5 cut(s)	150, 167, 215, 518, 708
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	4 cut(s)	181, 410, 587, 653
AluI	AGCT	4 cut(s)	181, 410, 587, 653
Alw21I	GWGCWC	2 cut(s)	316, 412
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	3 cut(s)	34, 178, 653
ApoI	RAATTY	1 cut(s)	333
AseI	ATTAAT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	316, 412
BbvI	GCAGC	3 cut(s)	46, 190, 640
BccI	CCATC	2 cut(s)	89, 292
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	356, 654
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	35, 179, 654
BlsI	GCNGC	3 cut(s)	36, 180, 655
Bme1390I	CCNGG	2 cut(s)	246, 437
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	246, 437
BmsI	GCATC	4 cut(s)	389, 467, 601, 627
BpmI	CTGGAG	2 cut(s)	396, 558
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 553
Bse1I	ACTGG	2 cut(s)	83, 111
BseBI	CCWGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	482, 642
BseLI	CCNNNNNNNGG	2 cut(s)	436, 553
BseMII	CTCAG	2 cut(s)	339, 375
BseNI	ACTGG	2 cut(s)	83, 111
BseXI	GCAGC	3 cut(s)	46, 190, 640
BsgI	GTGCAG	3 cut(s)	207, 381, 590
BshFI	GGCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	316, 412
BsiSI	CCGG	2 cut(s)	175, 246
BslI	CCNNNNNNNGG	2 cut(s)	436, 553
BsnI	GGCC	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	316, 412
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	2 cut(s)	340, 376
BspMAI	CTGCAG	2 cut(s)	360, 658
BspMI	ACCTGC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	83, 111
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	3 cut(s)	348, 384, 594
BstF5I	GGATG	2 cut(s)	482, 642
BstHHI	GCGC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	205, 692
BstSCI	CCNGG	2 cut(s)	244, 435
BstSFI	CTRYAG	2 cut(s)	356, 654
BstV1I	GCAGC	3 cut(s)	46, 190, 640
BstXI	CCANNNNNNTGG	2 cut(s)	298, 420
BsuRI	GGCC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	482, 642
BtsI	GCAGTG	2 cut(s)	316, 353
BtsIMutI	CAGTG	2 cut(s)	316, 353
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	590
CviAII	CATG	4 cut(s)	62, 202, 633, 689
DdeI	CTNAG	3 cut(s)	348, 384, 594
EaeI	YGGCCR	1 cut(s)	581
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	412
Eco32I	GATATC	2 cut(s)	238, 679
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	2 cut(s)	238, 679
EcoT38I	GRGCYC	1 cut(s)	412
FaeI	CATG	4 cut(s)	65, 205, 636, 692
FatI	CATG	4 cut(s)	61, 201, 632, 688
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	35, 179, 654
FokI	GGATG	2 cut(s)	489, 649
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	35, 179, 654
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	3 cut(s)	35, 179, 654
GsuI	CTGGAG	2 cut(s)	396, 558
HaeIII	GGCC	1 cut(s)	583
HapII	CCGG	2 cut(s)	175, 246
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	65, 205, 636, 692
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	2 cut(s)	192, 533
HpaII	CCGG	2 cut(s)	175, 246
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	2 cut(s)	665, 694
Hpy188I	TCNGA	2 cut(s)	349, 385
Hpy188III	TCNNGA	5 cut(s)	92, 256, 413, 537, 608
Hpy8I	GTNNAC	2 cut(s)	665, 694
HpyCH4III	ACNGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	348, 384, 594
Hsp92II	CATG	4 cut(s)	65, 205, 636, 692
HspAI	GCGC	1 cut(s)	524
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	46, 190, 640
LweI	GCATC	4 cut(s)	389, 467, 601, 627
MaeI	CTAG	1 cut(s)	287
MboII	GAAGA	2 cut(s)	155, 608
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	316, 412
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	5 cut(s)	9, 208, 333, 551, 669
MluNI	TGGCCA	1 cut(s)	583
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	294, 343, 533, 609
Mox20I	TGGCCA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	2 cut(s)	8, 576
MslI	CAYNNNNRTG	2 cut(s)	93, 296
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	2 cut(s)	175, 246
MspR9I	CCNGG	2 cut(s)	246, 437
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	223
NlaIII	CATG	4 cut(s)	65, 205, 636, 692
NspI	RCATGY	2 cut(s)	205, 692
PciI	ACATGT	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	621
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	36, 180, 655
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PscI	ACATGT	1 cut(s)	688
PshBI	ATTAAT	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	360, 658
PvuII	CAGCTG	1 cut(s)	587
RseI	CAYNNNNRTG	2 cut(s)	93, 296
SacI	GAGCTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	8, 576
SatI	GCNGC	3 cut(s)	35, 179, 654
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	246, 437
SduI	GDGCHC	2 cut(s)	316, 412
SetI	ASST	8 cut(s)	123, 183, 286, 322, 412, 589, 595, 655
SfaNI	GCATC	4 cut(s)	389, 467, 601, 627
SfcI	CTRYAG	2 cut(s)	356, 654
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	2 cut(s)	93, 296
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	9, 208, 333, 551, 669
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	244, 435
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	3 cut(s)	93, 316, 406
TasI	AATT	5 cut(s)	9, 208, 333, 551, 669
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	8, 576
Tru9I	TTAA	2 cut(s)	8, 576
TscAI	CASTG	2 cut(s)	316, 360
TseI	GCWGC	3 cut(s)	34, 178, 653
TspDTI	ATGAA	4 cut(s)	77, 78, 140, 608
TspGWI	ACGGA	2 cut(s)	473, 650
TspRI	CASTG	2 cut(s)	316, 360
VpaK11BI	GGWCC	1 cut(s)	590
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	2 cut(s)	205, 692
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.