Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

4486206 .. 4488925

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGTGTTCATTCTCTGGTCTGAACGCTCTGTACGACGCCGTTAACGGCGGAGGTGACGTGTGGATCAACGAGAACCGGTTCAAGATCGTCAGGCAGCTCGGCGAAGGTGGCTTCGCCTTTGTCTTTTTGGTCAAGGAGGTCGTCCCCGACTCCTCCTCCTCTACCTCTCTCGCCAAGAAACTCAAGGACCCTTCTCACCTTTCTGATGATGGAACTTATGCCATGAAAAAAGTTCTCATTCAGAATAGCGAACAGTTGGAGTTGGTCAAGGAGGAGATCCGAGTTTCATCACTTTTCACTCATCCTAATCTGCTTCCCCTTCTTGATCATGCCATTATTTCCGTTAAGCCTACACAAGACCAATCTTGGAACCATGAAGCATATTTATTATTTCCAGTTCATCTCGATGGAACTTTACTGGATAATGCGAAGGTTATGAAAACTAAAAAGGAGTTCTATTCAACCACAGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTCAAGCACATGCACAATTTTGAACCACCATATGCACATAATGATATCAAACCCGGTAATGTCCTGATTACTCATAGAAAAGGGCAACCACCTCTAGCCATATTGATGGATTTTGGCAGTGCTCGACCTGCAAGGAAACAAATTCGCACTCGTTCTGAGGCACTGCAGTTGCAGGAATGGGCATCTGAGCATTGTTCTGCACCATTTCGAGCTCCAGAGTTGTGGGATTGCCCAAGCCAGGCAGATATTGACGAGAGAACGGATATATGGTCTTTGGGATGCACTTTGTATGCCATACTGTATGGAGTATCTCCATTTGAATATGCGCTTGGTGAATCTGGAGGAAGCCTACAATTGGCAATAGTCAATGTGCAGATTAAGTGGCCAGCTGGACCTAAGCCTCCATATCCAGATGCTCTTCATCAGTTTATTACATGGATGCTTCAGCCACAAGCTGCAGTCCGTCCACGAATTGACGATATCATAATACATGTGGACAAGTTGATTTCAAAGTTCTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

343

Amino Acids

38.46

Weight (kDa)

6.31

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 331	8.8e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	68 - 333	1.7e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	74, 274
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	935
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	745, 862
AflIII	ACRYGT	2 cut(s)	60, 997
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	6 cut(s)	85, 465, 482, 530, 827, 1017
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	744
AjuI	GAANNNNNNNTTGG	2 cut(s)	819, 851
AluBI	AGCT	5 cut(s)	100, 496, 719, 896, 962
AluI	AGCT	5 cut(s)	100, 496, 719, 896, 962
Alw21I	GWGCWC	2 cut(s)	631, 721
AlwI	GGATC	2 cut(s)	74, 274
AoxI	GGCC	1 cut(s)	890
ApeKI	GCWGC	3 cut(s)	97, 493, 962
ApoI	RAATTY	1 cut(s)	648
AsiGI	ACCGGT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	190, 899
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	3 cut(s)	68, 191, 851
AvaII	GGWCC	2 cut(s)	190, 899
BalI	TGGCCA	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	721
Bbv12I	GWGCWC	2 cut(s)	631, 721
BbvI	GCAGC	3 cut(s)	109, 505, 949
BccI	CCATC	3 cut(s)	206, 404, 607
BceAI	ACGGC	2 cut(s)	26, 64
BciT130I	CCWGG	1 cut(s)	746
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	561
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	671, 963
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	3 cut(s)	98, 494, 963
BlsI	GCNGC	3 cut(s)	99, 495, 964
Bme1390I	CCNGG	2 cut(s)	561, 746
Bme18I	GGWCC	2 cut(s)	190, 899
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	190, 899
BmiI	GGNNCC	2 cut(s)	192, 374
BmrFI	CCNGG	2 cut(s)	561, 746
BmsI	GCATC	4 cut(s)	698, 776, 910, 936
BpmI	CTGGAG	2 cut(s)	705, 867
Bpu10I	CCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	170, 494
BpuMI	CCSGG	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 862
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	398, 426
BseBI	CCWGG	1 cut(s)	746
BseGI	GGATG	3 cut(s)	304, 791, 951
BseLI	CCNNNNNNNGG	2 cut(s)	745, 862
BseMII	CTCAG	2 cut(s)	654, 684
BseNI	ACTGG	2 cut(s)	398, 426
BseRI	GAGGAG	4 cut(s)	145, 148, 151, 290
BseXI	GCAGC	3 cut(s)	109, 505, 949
BsgI	GTGCAG	3 cut(s)	522, 690, 899
BshFI	GGCC	1 cut(s)	892
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	631, 721
BsiSI	CCGG	3 cut(s)	79, 490, 561
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	745, 862
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	892
Bsp1286I	GDGCHC	2 cut(s)	631, 721
Bsp143I	GATC	4 cut(s)	66, 87, 279, 328
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	892
BspCNI	CTCAG	2 cut(s)	655, 685
BspLI	GGNNCC	2 cut(s)	192, 374
BspMAI	CTGCAG	2 cut(s)	675, 967
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	74, 274
BspQI	GCTCTTC	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	398, 426
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	4 cut(s)	66, 87, 279, 328
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	2 cut(s)	258, 807
Bst6I	CTCTTC	1 cut(s)	930
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	3 cut(s)	663, 693, 903
BstF5I	GGATG	3 cut(s)	304, 791, 951
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	4 cut(s)	69, 90, 282, 331
BstMBI	GATC	4 cut(s)	66, 87, 279, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 635
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	2 cut(s)	520, 1001
BstSCI	CCNGG	2 cut(s)	559, 744
BstSFI	CTRYAG	2 cut(s)	671, 963
BstV1I	GCAGC	3 cut(s)	109, 505, 949
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	2 cut(s)	613, 729
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	892
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	304, 791, 951
BtsI	GCAGTG	2 cut(s)	631, 668
BtsIMutI	CAGTG	2 cut(s)	631, 668
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	894
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	190, 899
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	6 cut(s)	226, 332, 377, 517, 942, 998
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	663, 693, 903
DpnI	GATC	4 cut(s)	68, 89, 281, 330
DpnII	GATC	4 cut(s)	66, 87, 279, 328
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	721
Eco32I	GATATC	2 cut(s)	553, 988
Eco47I	GGWCC	2 cut(s)	190, 899
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	744
EcoRV	GATATC	2 cut(s)	553, 988
EcoT38I	GRGCYC	1 cut(s)	721
FaeI	CATG	6 cut(s)	229, 335, 380, 520, 945, 1001
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	225, 331, 376, 516, 941, 997
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	98, 494, 963
FokI	GGATG	3 cut(s)	291, 798, 958
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	3 cut(s)	98, 494, 963
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	3 cut(s)	98, 494, 963
GsuI	CTGGAG	2 cut(s)	705, 867
HaeIII	GGCC	1 cut(s)	892
HapII	CCGG	3 cut(s)	79, 490, 561
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	229, 335, 380, 520, 945, 1001
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	152, 507, 842
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	3 cut(s)	79, 490, 561
HphI	GGTGA	3 cut(s)	68, 191, 851
Hpy166II	GTNNAC	3 cut(s)	46, 974, 1003
Hpy188I	TCNGA	6 cut(s)	24, 208, 246, 284, 664, 694
Hpy188III	TCNNGA	7 cut(s)	85, 326, 407, 571, 722, 846, 917
Hpy8I	GTNNAC	3 cut(s)	46, 974, 1003
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	101, 204, 332, 427
HpyCH4III	ACNGT	2 cut(s)	258, 807
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 635
HpyF3I	CTNAG	3 cut(s)	663, 693, 903
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	6 cut(s)	229, 335, 380, 520, 945, 1001
HspAI	GCGC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	66, 87, 279, 328
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	3 cut(s)	109, 505, 949
LweI	GCATC	4 cut(s)	698, 776, 910, 936
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	68, 89, 281, 330
MboI	GATC	4 cut(s)	66, 87, 279, 328
MboII	GAAGA	2 cut(s)	470, 917
MfeI	CAATTG	1 cut(s)	860
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	2 cut(s)	631, 721
MlsI	TGGCCA	1 cut(s)	892
MluCI	AATT	4 cut(s)	523, 648, 860, 978
MluNI	TGGCCA	1 cut(s)	892
MlyI	GAGTC	2 cut(s)	146, 501
MmeI	TCCRAC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	892
MseI	TTAA	3 cut(s)	45, 348, 885
MslI	CAYNNNNRTG	2 cut(s)	408, 611
Msp20I	TGGCCA	1 cut(s)	892
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	3 cut(s)	79, 490, 561
MspR9I	CCNGG	2 cut(s)	561, 746
MunI	CAATTG	1 cut(s)	860
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	111, 635
NciI	CCSGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	4 cut(s)	66, 87, 279, 328
NlaIII	CATG	6 cut(s)	229, 335, 380, 520, 945, 1001
NlaIV	GGNNCC	2 cut(s)	192, 374
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	520, 1001
PciI	ACATGT	1 cut(s)	997
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	842
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	99, 495, 964
PleI	GAGTC	2 cut(s)	146, 501
PpsI	GAGTC	2 cut(s)	146, 501
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	1 cut(s)	997
Psp124BI	GAGCTC	1 cut(s)	721
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	192, 374
PspPI	GGNCC	2 cut(s)	190, 899
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	2 cut(s)	675, 967
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	408, 611
SacI	GAGCTC	1 cut(s)	721
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	45, 348, 885
SatI	GCNGC	3 cut(s)	98, 494, 963
Sau3AI	GATC	4 cut(s)	66, 87, 279, 328
Sau96I	GGNCC	2 cut(s)	190, 899
SchI	GAGTC	2 cut(s)	146, 501
ScrFI	CCNGG	2 cut(s)	561, 746
SduI	GDGCHC	2 cut(s)	631, 721
SfaNI	GCATC	4 cut(s)	698, 776, 910, 936
SfcI	CTRYAG	2 cut(s)	671, 963
SinI	GGWCC	2 cut(s)	190, 899
SmiMI	CAYNNNNRTG	2 cut(s)	408, 611
SmlI	CTYRAG	2 cut(s)	185, 509
SmoI	CTYRAG	2 cut(s)	185, 509
Sse9I	AATT	4 cut(s)	523, 648, 860, 978
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	559, 744
TaaI	ACNGT	2 cut(s)	258, 807
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	408, 631, 715
TasI	AATT	4 cut(s)	523, 648, 860, 978
TfiI	GAWTC	1 cut(s)	842
Tru1I	TTAA	3 cut(s)	45, 348, 885
Tru9I	TTAA	3 cut(s)	45, 348, 885
TscAI	CASTG	2 cut(s)	631, 675
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	97, 493, 962
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	242, 279, 392, 393, 455, 917
TspGWI	ACGGA	3 cut(s)	334, 782, 959
TspRI	CASTG	2 cut(s)	631, 675
VpaK11BI	GGWCC	2 cut(s)	190, 899
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	2 cut(s)	520, 1001
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.