Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

22256543 .. 22258506

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATCGATCATGCCATTATTGCCGTTAAGACTACACAAGAACAATCTTGGAACCATGAAGCATACTTGTTATTTCCCGTTCATCTGGATGGAACATTACTGGACAATGCCAAGACTATGAAAGCTAAAAAGGAGTTCTTTTCCACCTCAGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTCAAGCATATGCACACTTTCGATCGATCATATGCACATAATGATATCAAACCTGGTAACGTTCTGATAACCCATAGAAAAGGACAATCACCTCTTGCAATATTGATGGATTTTGGCAGTGCTCGACCTGCGAGGAGGCAAATTCGCTCTCGTACAGAGGCACTACAGTTGCAGGAATGGGCATCTGAGCATTGCTCGGCACCATTTCGAGCTCCAGAGTTGTGGGATTGCCCAAGCCAAGCCGATATTGATGAAAGAACTGATGTATGGTCATTAGGATGCACTTTGTATGCAATACTGTACGGAATGTCTCCTTTTGAATATGCACTCGGCGAATCTGGAGGAAGCCTACAATTGGCCATAGTCAATGTGCAGATAAAGTGGCCAGCCGGACCTAATCCTCCATATCCAGATGCTCTTCACCAGTTTATCACATGGATGCTTCAGCCGCAGGCTGCAGTCCGTCCTCGCATTGACGATATCCTAATTCACGTGGACAAGTTGATCGCCAAGTTCTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

237

Amino Acids

26.73

Weight (kDa)

6.79

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	385
AciI	CCGC	1 cut(s)	635
AclI	AACGTT	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	543, 569
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	614
AcvI	CACGTG	1 cut(s)	679
AfaI	GTAC	2 cut(s)	340, 488
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	2 cut(s)	161, 506
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	125, 175, 398
AluI	AGCT	3 cut(s)	125, 175, 398
Alw21I	GWGCWC	2 cut(s)	310, 400
Alw26I	GTCTC	1 cut(s)	501
AoxI	GGCC	2 cut(s)	543, 569
ApeKI	GCWGC	2 cut(s)	172, 641
ApoI	RAATTY	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	267, 599
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	2 cut(s)	545, 571
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	679
Bbv12I	GWGCWC	2 cut(s)	310, 400
BbvI	GCAGC	2 cut(s)	184, 628
BccI	CCATC	2 cut(s)	83, 286
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	350, 642
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	173, 635, 642
BlsI	GCNGC	3 cut(s)	174, 636, 643
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	53, 387
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	4 cut(s)	377, 455, 589, 615
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	2 cut(s)	384, 546
BpuEI	CTTGAG	1 cut(s)	173
Bsa29I	ATCGAT	2 cut(s)	6, 211
BsaAI	YACGTR	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	105, 610
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	2 cut(s)	6, 211
BseGI	GGATG	3 cut(s)	94, 470, 630
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	162, 363
BseNI	ACTGG	2 cut(s)	105, 610
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	184, 628
BsgI	GTGCAG	2 cut(s)	201, 578
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	545, 571
BshNI	GGYRCC	1 cut(s)	385
BshVI	ATCGAT	2 cut(s)	6, 211
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	310, 400
BsiSI	CCGG	2 cut(s)	169, 576
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	545, 571
Bsp1286I	GDGCHC	2 cut(s)	310, 400
Bsp143I	GATC	5 cut(s)	3, 7, 208, 212, 690
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	2 cut(s)	545, 571
BspCNI	CTCAG	2 cut(s)	161, 364
BspDI	ATCGAT	2 cut(s)	6, 211
BspLI	GGNNCC	2 cut(s)	53, 387
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	105, 610
BssMI	GATC	5 cut(s)	3, 7, 208, 212, 690
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	354, 486
Bst6I	CTCTTC	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	573, 639
BstDEI	CTNAG	2 cut(s)	148, 372
BstF5I	GGATG	3 cut(s)	94, 470, 630
BstKTI	GATC	5 cut(s)	6, 10, 211, 215, 693
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	5 cut(s)	3, 7, 208, 212, 690
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 314, 634
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	2 cut(s)	350, 642
BstV1I	GCAGC	2 cut(s)	184, 628
BstXI	CCANNNNNNTGG	1 cut(s)	408
Bsu15I	ATCGAT	2 cut(s)	6, 211
BsuRI	GGCC	2 cut(s)	545, 571
BsuTUI	ATCGAT	2 cut(s)	6, 211
BtsCI	GGATG	3 cut(s)	94, 470, 630
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	573, 639
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	2 cut(s)	6, 211
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	339, 487
CviAII	CATG	3 cut(s)	11, 56, 621
CviQI	GTAC	2 cut(s)	339, 487
DdeI	CTNAG	2 cut(s)	148, 372
DpnI	GATC	5 cut(s)	5, 9, 210, 214, 692
DpnII	GATC	5 cut(s)	3, 7, 208, 212, 690
EaeI	YGGCCR	2 cut(s)	543, 569
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	2 cut(s)	232, 667
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	614
Eco72I	CACGTG	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	2 cut(s)	232, 667
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	3 cut(s)	14, 59, 624
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	10, 55, 620
FauNDI	CATATG	2 cut(s)	195, 217
Fnu4HI	GCNGC	3 cut(s)	173, 635, 642
FokI	GGATG	3 cut(s)	101, 477, 637
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	173, 635, 642
GluI	GCNGC	3 cut(s)	173, 635, 642
GsuI	CTGGAG	2 cut(s)	384, 546
HaeIII	GGCC	2 cut(s)	545, 571
HapII	CCGG	2 cut(s)	169, 576
Hin1II	CATG	3 cut(s)	14, 59, 624
HinfI	GANTC	2 cut(s)	186, 521
HpaII	CCGG	2 cut(s)	169, 576
HphI	GGTGA	2 cut(s)	267, 599
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	3 cut(s)	151, 252, 373
Hpy188III	TCNNGA	4 cut(s)	86, 401, 525, 596
Hpy8I	GTNNAC	1 cut(s)	682
HpyCH4III	ACNGT	2 cut(s)	354, 486
HpyCH4IV	ACGT	2 cut(s)	246, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 314, 634
HpyF3I	CTNAG	2 cut(s)	148, 372
HpySE526I	ACGT	2 cut(s)	246, 678
Hsp92II	CATG	3 cut(s)	14, 59, 624
Kzo9I	GATC	5 cut(s)	3, 7, 208, 212, 690
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	184, 628
LweI	GCATC	4 cut(s)	377, 455, 589, 615
MabI	ACCWGGT	1 cut(s)	238
MaeII	ACGT	2 cut(s)	246, 678
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	5 cut(s)	5, 9, 210, 214, 692
MboI	GATC	5 cut(s)	3, 7, 208, 212, 690
MboII	GAAGA	2 cut(s)	149, 596
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	310, 400
MlsI	TGGCCA	2 cut(s)	545, 571
MluCI	AATT	3 cut(s)	327, 539, 672
MluNI	TGGCCA	2 cut(s)	545, 571
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	8 cut(s)	157, 288, 312, 315, 337, 521, 597, 663
Mox20I	TGGCCA	2 cut(s)	545, 571
MscI	TGGCCA	2 cut(s)	545, 571
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	3 cut(s)	87, 463, 623
Msp20I	TGGCCA	2 cut(s)	545, 571
MspI	CCGG	2 cut(s)	169, 576
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	20, 314, 634
NdeI	CATATG	2 cut(s)	195, 217
NdeII	GATC	5 cut(s)	3, 7, 208, 212, 690
NlaIII	CATG	3 cut(s)	14, 59, 624
NlaIV	GGNNCC	2 cut(s)	53, 387
NmeAIII	GCCGAG	2 cut(s)	362, 495
PciSI	GCTCTTC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	174, 636, 643
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	180
PmaCI	CACGTG	1 cut(s)	679
PmlI	CACGTG	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	180
Ppu21I	YACGTR	1 cut(s)	679
Psp124BI	GAGCTC	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	238
PspCI	CACGTG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	53, 387
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	646
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	340, 488
RsaNI	GTAC	2 cut(s)	339, 487
RseI	CAYNNNNRTG	3 cut(s)	87, 463, 623
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	3 cut(s)	173, 635, 642
Sau3AI	GATC	5 cut(s)	3, 7, 208, 212, 690
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	310, 400
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	4 cut(s)	377, 455, 589, 615
SfcI	CTRYAG	2 cut(s)	350, 642
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	87, 463, 623
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	327, 539, 672
SsiI	CCGC	1 cut(s)	635
SspI	AATATT	2 cut(s)	165, 288
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	354, 486
TaiI	ACGT	2 cut(s)	249, 681
TaqI	TCGA	5 cut(s)	6, 207, 211, 310, 394
TasI	AATT	3 cut(s)	327, 539, 672
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	172, 641
TspDTI	ATGAA	4 cut(s)	71, 72, 134, 453
TspGWI	ACGGA	2 cut(s)	504, 638
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.