Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

30127801 .. 30130959

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1217900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGGTGCACATTCTCTGGTTTGGGCGCGCTGTACGACGCCGTGAACGGCGGAGGCGACGTGTGGATTAACGAGAATCGGTTCAAGATCGTGAGGCAGCTCGGGGAAGGTGGGTTCGCTTATGTGTTTTTGGTCAAGGAGGTGGTCGCCGACTCCTCCGCCTCCGGCGGTGGGGGTCTCGCCAAGAAATTCAAGGATCCCTCTCATGTCTCAGATGATGGAACTTATGCTTTGAAAAAGGTTCTCATTCAGAATAGTGAGCAGTTGGAGTTGGTGAAGGAGGAGATCCGTGTTTCATCGCTGTTCAGTCATCCCAATCTGCTTCCACTTCTTGATCATGCCATTATTGCCGTTAAGACAACACAAGAACAATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATCTGGATGGAACTTTACTGGATAATGCTAAGACTATGAAAGCTAAAAAGGAGTTCTTTTCCACCTCAGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTCAAGCATATGCACACTTTGGATCCGCCATATGCACATAATGATATCAAACCTGGTAACGTTCTGATAACCCATAGAAAAGGACAATCACCTCTTGCAATATTGATGGATTTTGGCAGTGCTCGACCTGCGAGGAGGCAAATTCGCTCTCGTACAGAGGCACTACAGTTGCAGGAATGGGCGTCTGAGCATTGCTCAGCACCATTTCGAGCTCCAGAGTTGTGGGATTGCCCGAGCCAAGCCGATATTGACGAGAGGACTGATGTATGGTCCTTGGGATGCACTTTGTATGCAATACTGTACGGAATGTCTCCATTTGAATATGCACTCGGCGAATCTGGAGGAAGCCTACAATTGGCGATAGTCAACGTGCAGATAAAGTGGCCAGCTGGACCTAATCCTCCATATCCGGACGCTCTTCACCAGTTCATCACATGGATGCTTCAGCCGCAGGCTGCAGTCCGCCCTCGCATTGACGATATCCTGATCCATGTGGACAAGTTGATCTCCAAGTTCTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

346

Amino Acids

38.28

Weight (kDa)

6.18

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 332	7e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	69 - 335	3.3e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	6 cut(s)	51, 159, 168, 539, 962, 976
AclI	AACGTT	1 cut(s)	573
AclWI	GGATC	6 cut(s)	191, 204, 280, 530, 543, 994
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	2 cut(s)	188, 654
AcuI	CTGAAG	1 cut(s)	941
AcyI	GRCGYC	2 cut(s)	39, 695
AfaI	GTAC	3 cut(s)	35, 667, 815
AfiI	CCNNNNNNNGG	2 cut(s)	171, 868
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	5 cut(s)	85, 193, 235, 488, 833
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	100, 452, 502, 725, 902
AluI	AGCT	5 cut(s)	100, 452, 502, 725, 902
Alw21I	GWGCWC	3 cut(s)	11, 637, 727
Alw26I	GTCTC	3 cut(s)	182, 214, 828
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	6 cut(s)	191, 204, 280, 530, 543, 994
Ama87I	CYCGRG	2 cut(s)	101, 745
Aor13HI	TCCGGA	1 cut(s)	922
AoxI	GGCC	1 cut(s)	896
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	97, 499, 968
ApoI	RAATTY	2 cut(s)	188, 654
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	29, 31
AspS9I	GGNCC	2 cut(s)	783, 905
AsuHPI	GGTGA	3 cut(s)	286, 594, 926
AvaI	CYCGRG	2 cut(s)	101, 745
AvaII	GGWCC	2 cut(s)	783, 905
BaeGI	GKGCMC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	898
BamHI	GGATCC	2 cut(s)	196, 535
BanII	GRGCYC	1 cut(s)	727
Bbv12I	GWGCWC	3 cut(s)	11, 637, 727
BbvI	GCAGC	3 cut(s)	109, 511, 955
BccI	CCATC	3 cut(s)	212, 410, 613
BceAI	ACGGC	3 cut(s)	26, 64, 335
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	182, 214, 828
BfmI	CTRYAG	2 cut(s)	677, 969
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	98, 500, 962, 969
BlpI	GCTNAGC	1 cut(s)	709
BlsI	GCNGC	4 cut(s)	99, 501, 963, 970
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	2 cut(s)	783, 905
BmeT110I	CYCGRG	2 cut(s)	101, 745
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	783, 905
BmiI	GGNNCC	3 cut(s)	198, 380, 537
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	782, 942
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
BpmI	CTGGAG	3 cut(s)	711, 873, 1015
Bpu1102I	GCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	2 cut(s)	39, 695
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 868
Bse1I	ACTGG	4 cut(s)	404, 432, 937, 1032
Bse3DI	GCAATG	1 cut(s)	703
BseAI	TCCGGA	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	4 cut(s)	310, 421, 797, 957
BseLI	CCNNNNNNNGG	2 cut(s)	171, 868
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	4 cut(s)	225, 489, 690, 723
BseNI	ACTGG	4 cut(s)	404, 432, 937, 1032
BsePI	GCGCGC	1 cut(s)	27
BseRI	GAGGAG	3 cut(s)	145, 296, 661
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	109, 511, 955
BsgI	GTGCAG	2 cut(s)	528, 905
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	898
BsiHKAI	GWGCWC	3 cut(s)	11, 637, 727
BsiHKCI	CYCGRG	2 cut(s)	101, 745
BsiSI	CCGG	3 cut(s)	165, 496, 923
BslI	CCNNNNNNNGG	2 cut(s)	171, 868
BsmAI	GTCTC	3 cut(s)	182, 214, 828
BsnI	GGCC	1 cut(s)	898
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	101, 745
Bsp1286I	GDGCHC	3 cut(s)	11, 637, 727
Bsp13I	TCCGGA	1 cut(s)	922
Bsp143I	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
Bsp1720I	GCTNAGC	1 cut(s)	709
BspACI	CCGC	6 cut(s)	51, 159, 168, 539, 962, 976
BspANI	GGCC	1 cut(s)	898
BspCNI	CTCAG	4 cut(s)	224, 488, 691, 722
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	198, 380, 537
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	6 cut(s)	191, 204, 280, 530, 543, 994
BspQI	GCTCTTC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	4 cut(s)	404, 432, 937, 1032
BssECI	CCNNGG	1 cut(s)	786
BssHII	GCGCGC	1 cut(s)	27
BssMI	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
BssNI	GRCGYC	2 cut(s)	39, 695
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	681, 813
Bst6I	CTCTTC	1 cut(s)	936
BstACI	GRCGYC	2 cut(s)	39, 695
BstC8I	GCNNGC	3 cut(s)	29, 900, 966
BstDEI	CTNAG	5 cut(s)	211, 438, 475, 699, 709
BstF5I	GGATG	4 cut(s)	310, 421, 797, 957
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	29, 31
BstKTI	GATC	7 cut(s)	90, 199, 288, 337, 538, 1002, 1020
BstMAI	GTCTC	3 cut(s)	182, 214, 828
BstMBI	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 641, 961
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	677, 969
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	109, 511, 955
BstX2I	RGATCY	3 cut(s)	196, 285, 535
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstYI	RGATCY	3 cut(s)	196, 285, 535
BsuRI	GGCC	1 cut(s)	898
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	310, 421, 797, 957
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	3 cut(s)	29, 900, 966
CfoI	GCGC	2 cut(s)	29, 31
Cfr13I	GGNCC	2 cut(s)	783, 905
CseI	GACGC	3 cut(s)	47, 684, 935
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	34, 666, 814
CviAII	CATG	5 cut(s)	206, 338, 383, 948, 1004
CviQI	GTAC	3 cut(s)	34, 666, 814
DdeI	CTNAG	5 cut(s)	211, 438, 475, 699, 709
DpnI	GATC	7 cut(s)	89, 198, 287, 336, 537, 1001, 1019
DpnII	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
EciI	GGCGGA	4 cut(s)	66, 148, 528, 965
Ecl136II	GAGCTC	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	727
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	559, 994
Eco47I	GGWCC	2 cut(s)	783, 905
Eco53kI	GAGCTC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	941
Eco88I	CYCGRG	2 cut(s)	101, 745
EcoICRI	GAGCTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	2 cut(s)	559, 994
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	5 cut(s)	209, 341, 386, 951, 1007
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	5 cut(s)	205, 337, 382, 947, 1003
FauNDI	CATATG	2 cut(s)	522, 544
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	4 cut(s)	98, 500, 962, 969
FokI	GGATG	4 cut(s)	297, 428, 804, 964
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	4 cut(s)	98, 500, 962, 969
GlaI	GCGC	2 cut(s)	28, 30
GluI	GCNGC	4 cut(s)	98, 500, 962, 969
GsuI	CTGGAG	3 cut(s)	711, 873, 1015
HaeIII	GGCC	1 cut(s)	898
HapII	CCGG	3 cut(s)	165, 496, 923
HgaI	GACGC	3 cut(s)	47, 684, 935
HhaI	GCGC	2 cut(s)	29, 31
Hin1I	GRCGYC	2 cut(s)	39, 695
Hin1II	CATG	5 cut(s)	209, 341, 386, 951, 1007
Hin6I	GCGC	2 cut(s)	27, 29
HinP1I	GCGC	2 cut(s)	27, 29
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	4 cut(s)	76, 152, 513, 848
HpaII	CCGG	3 cut(s)	165, 496, 923
HphI	GGTGA	3 cut(s)	286, 594, 926
Hpy166II	GTNNAC	4 cut(s)	9, 46, 880, 1009
Hpy188I	TCNGA	5 cut(s)	214, 252, 478, 579, 700
Hpy188III	TCNNGA	8 cut(s)	85, 91, 332, 413, 728, 852, 923, 997
Hpy8I	GTNNAC	4 cut(s)	9, 46, 880, 1009
Hpy99I	CGWCG	2 cut(s)	41, 62
HpyAV	CCTTC	2 cut(s)	101, 271
HpyCH4III	ACNGT	2 cut(s)	681, 813
HpyCH4IV	ACGT	3 cut(s)	60, 573, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 641, 961
HpyF3I	CTNAG	5 cut(s)	211, 438, 475, 699, 709
HpySE526I	ACGT	3 cut(s)	60, 573, 882
Hsp92I	GRCGYC	2 cut(s)	39, 695
Hsp92II	CATG	5 cut(s)	209, 341, 386, 951, 1007
HspAI	GCGC	2 cut(s)	27, 29
Kpn2I	TCCGGA	1 cut(s)	922
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	3 cut(s)	109, 511, 955
LweI	GCATC	2 cut(s)	782, 942
MabI	ACCWGGT	1 cut(s)	565
MaeII	ACGT	3 cut(s)	60, 573, 882
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	7 cut(s)	89, 198, 287, 336, 537, 1001, 1019
MboI	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
MboII	GAAGA	2 cut(s)	476, 923
MfeI	CAATTG	1 cut(s)	866
MflI	RGATCY	3 cut(s)	196, 285, 535
MhlI	GDGCHC	3 cut(s)	11, 637, 727
MlsI	TGGCCA	1 cut(s)	898
MluCI	AATT	3 cut(s)	188, 654, 866
MluNI	TGGCCA	1 cut(s)	898
MlyI	GAGTC	2 cut(s)	146, 507
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	898
MroI	TCCGGA	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	898
MseI	TTAA	2 cut(s)	69, 354
MslI	CAYNNNNRTG	2 cut(s)	414, 950
Msp20I	TGGCCA	1 cut(s)	898
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	3 cut(s)	165, 496, 923
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	347, 641, 961
NdeI	CATATG	2 cut(s)	522, 544
NdeII	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
NlaIII	CATG	5 cut(s)	209, 341, 386, 951, 1007
NlaIV	GGNNCC	3 cut(s)	198, 380, 537
NmeAIII	GCCGAG	1 cut(s)	822
PauI	GCGCGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	76, 848
PkrI	GCNGC	4 cut(s)	99, 501, 963, 970
PleI	GAGTC	2 cut(s)	146, 507
PpsI	GAGTC	2 cut(s)	146, 507
Psp124BI	GAGCTC	1 cut(s)	727
Psp1406I	AACGTT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	198, 380, 537
PspPI	GGNCC	2 cut(s)	783, 905
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	3 cut(s)	196, 285, 535
PteI	GCGCGC	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	3 cut(s)	35, 667, 815
RsaNI	GTAC	3 cut(s)	34, 666, 814
RseI	CAYNNNNRTG	2 cut(s)	414, 950
SacI	GAGCTC	1 cut(s)	727
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	2 cut(s)	69, 354
SatI	GCNGC	4 cut(s)	98, 500, 962, 969
Sau3AI	GATC	7 cut(s)	87, 196, 285, 334, 535, 999, 1017
Sau96I	GGNCC	2 cut(s)	783, 905
SchI	GAGTC	2 cut(s)	146, 507
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	11, 637, 727
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	782, 942
SfcI	CTRYAG	2 cut(s)	677, 969
SinI	GGWCC	2 cut(s)	783, 905
SmiMI	CAYNNNNRTG	2 cut(s)	414, 950
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	188, 654, 866
SsiI	CCGC	6 cut(s)	51, 159, 168, 539, 962, 976
SspI	AATATT	2 cut(s)	492, 615
SstI	GAGCTC	1 cut(s)	727
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	681, 813
TaiI	ACGT	3 cut(s)	63, 576, 885
TaqI	TCGA	2 cut(s)	637, 721
TasI	AATT	3 cut(s)	188, 654, 866
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	2 cut(s)	76, 848
Tru1I	TTAA	2 cut(s)	69, 354
Tru9I	TTAA	2 cut(s)	69, 354
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	3 cut(s)	97, 499, 968
TspDTI	ATGAA	5 cut(s)	285, 398, 399, 461, 931
TspGWI	ACGGA	2 cut(s)	278, 831
TspRI	CASTG	1 cut(s)	637
VneI	GTGCAC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	783, 905
XapI	RAATTY	2 cut(s)	188, 654
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.