Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Forward (+)

62607578 .. 62610761

Gene Structure 3184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGTGTTCATTCTCTGGTCTGAACGCTCTGTACGACGCCGTTAACGGCGGAGGTGACGTCTGGATCAACGAGAACCGGTTCAAGATCGTCAGGCAGCTCGGCGAAGGTGGCTTCGCCTTTGTCTTTTTGGTCAAGGAGGTCGCCCCCGACTCCTCCTCCTCCTCCTCCTCTACCTCTCTCGCCAAGAAACTCAAGGACCCTTCTCACCTTTCTGATGATGGAACTTATGCCATGAAAAAAGTTCTCATTCAGAATAGCGAACAGTTGGAGTTGGTCAAGGAGGAGATCCGAGTTTCATCACTTTTCACTCATCCTAATCTGCTTCCCCTTCTTGATCATGCCATTATTTCCGTTAAGCCTACACAAGACCAATCTTGGAACCATGAAGCATATTTATTATTTCCAGTTCATCTCGATGGAACTTTACTGGATAATGCGAAGGTTATGAAAACTAAAAAGGAGTTCTATTCAACCACAGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTCAAGCACATGCACAATTTTGAACCCCCATATGCACATAATGATATCAAACCCGGTAATGTCCTGATTACTCATAGAAAAGGGCAACCGCCTCTAGCCATATTGATGGATTTTGGCAGTGCTCGACCTGCAAGGAAACAAATTCGCACTCGTTCAGAGGCACTGCAGTTGCAGGAATGGGCATCTGAGCATTGTTCTGCACCATTTCGAGCTCCAGAGTTGTGGGATTGCCCAAGCCAGGCAGATATTGACGAGAGAACGGATATATGGTCTTTGGGATGCACTTTGTATGCCATACTGTATGGAGTATCTCCATTTGAATATGCGCTTGGTGAATCTGGAGGAAGCCTACAATTGGCAATAGTCAATGTGCAGATTAAGTGGCCAGCTGGACCTAAGCCTCCATATCCAGATGCTCTTCATCAGTTTATTACATGGATGCTTCAGCCACAAGCTGCAGTCCGTCCACGAATTGACGATATCATAATACATGTGGACAAGTTGATTTCAAAGTTCTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

346

Amino Acids

38.69

Weight (kDa)

6.31

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	70 - 334	1.4e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	72 - 336	2.3e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	652
AciI	CCGC	2 cut(s)	51, 605
AclWI	GGATC	2 cut(s)	74, 283
AcoI	YGGCCR	1 cut(s)	899
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	944
AcyI	GRCGYC	2 cut(s)	39, 60
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	754, 871
AflIII	ACRYGT	1 cut(s)	1006
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	6 cut(s)	85, 474, 491, 539, 836, 1026
AjnI	CCWGG	1 cut(s)	753
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	5 cut(s)	100, 505, 728, 905, 971
AluI	AGCT	5 cut(s)	100, 505, 728, 905, 971
Alw21I	GWGCWC	2 cut(s)	640, 730
AlwI	GGATC	2 cut(s)	74, 283
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	3 cut(s)	97, 502, 971
ApoI	RAATTY	1 cut(s)	657
AsiGI	ACCGGT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	199, 908
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	68, 200, 860
AvaII	GGWCC	2 cut(s)	199, 908
BalI	TGGCCA	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	2 cut(s)	640, 730
BbvI	GCAGC	3 cut(s)	109, 514, 958
BccI	CCATC	3 cut(s)	215, 413, 616
BceAI	ACGGC	2 cut(s)	26, 64
BciT130I	CCWGG	1 cut(s)	755
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	570
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	680, 972
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	3 cut(s)	98, 503, 972
BlsI	GCNGC	3 cut(s)	99, 504, 973
Bme1390I	CCNGG	2 cut(s)	570, 755
Bme18I	GGWCC	2 cut(s)	199, 908
BmgT120I	GGNCC	2 cut(s)	199, 908
BmiI	GGNNCC	2 cut(s)	201, 383
BmrFI	CCNGG	2 cut(s)	570, 755
BmsI	GCATC	4 cut(s)	707, 785, 919, 945
BpmI	CTGGAG	2 cut(s)	714, 876
Bpu10I	CCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	179, 503
BpuMI	CCSGG	1 cut(s)	570
BsaHI	GRCGYC	2 cut(s)	39, 60
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 871
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	407, 435
BseBI	CCWGG	1 cut(s)	755
BseGI	GGATG	3 cut(s)	313, 800, 960
BseLI	CCNNNNNNNGG	2 cut(s)	754, 871
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	2 cut(s)	407, 435
BseRI	GAGGAG	7 cut(s)	145, 148, 151, 154, 157, 160, 299
BseXI	GCAGC	3 cut(s)	109, 514, 958
BsgI	GTGCAG	3 cut(s)	531, 699, 908
BshFI	GGCC	1 cut(s)	901
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	640, 730
BsiSI	CCGG	3 cut(s)	79, 499, 570
BslI	CCNNNNNNNGG	2 cut(s)	754, 871
BsnI	GGCC	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	640, 730
Bsp143I	GATC	4 cut(s)	66, 87, 288, 337
BspACI	CCGC	2 cut(s)	51, 605
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	201, 383
BspMAI	CTGCAG	2 cut(s)	684, 976
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	74, 283
BspQI	GCTCTTC	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	407, 435
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	4 cut(s)	66, 87, 288, 337
BssNI	GRCGYC	2 cut(s)	39, 60
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	2 cut(s)	267, 816
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	2 cut(s)	39, 60
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	2 cut(s)	702, 912
BstF5I	GGATG	3 cut(s)	313, 800, 960
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	4 cut(s)	69, 90, 291, 340
BstMBI	GATC	4 cut(s)	66, 87, 288, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 644
BstNI	CCWGG	1 cut(s)	755
BstNSI	RCATGY	2 cut(s)	529, 1010
BstSCI	CCNGG	2 cut(s)	568, 753
BstSFI	CTRYAG	2 cut(s)	680, 972
BstV1I	GCAGC	3 cut(s)	109, 514, 958
BstX2I	RGATCY	1 cut(s)	288
BstXI	CCANNNNNNTGG	2 cut(s)	622, 738
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	901
BtsCI	GGATG	3 cut(s)	313, 800, 960
BtsI	GCAGTG	2 cut(s)	640, 677
BtsIMutI	CAGTG	2 cut(s)	640, 677
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	903
CfoI	GCGC	1 cut(s)	844
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	199, 908
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	6 cut(s)	235, 341, 386, 526, 951, 1007
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	702, 912
DpnI	GATC	4 cut(s)	68, 89, 290, 339
DpnII	GATC	4 cut(s)	66, 87, 288, 337
EaeI	YGGCCR	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	728
Eco24I	GRGCYC	1 cut(s)	730
Eco32I	GATATC	2 cut(s)	562, 997
Eco47I	GGWCC	2 cut(s)	199, 908
Eco53kI	GAGCTC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	753
EcoRV	GATATC	2 cut(s)	562, 997
EcoT38I	GRGCYC	1 cut(s)	730
FaeI	CATG	6 cut(s)	238, 344, 389, 529, 954, 1010
FatI	CATG	6 cut(s)	234, 340, 385, 525, 950, 1006
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	98, 503, 972
FokI	GGATG	3 cut(s)	300, 807, 967
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	98, 503, 972
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	3 cut(s)	98, 503, 972
GsuI	CTGGAG	2 cut(s)	714, 876
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	3 cut(s)	79, 499, 570
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	844
Hin1I	GRCGYC	2 cut(s)	39, 60
Hin1II	CATG	6 cut(s)	238, 344, 389, 529, 954, 1010
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	152, 516, 851
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	3 cut(s)	79, 499, 570
HphI	GGTGA	3 cut(s)	68, 200, 860
Hpy166II	GTNNAC	3 cut(s)	46, 983, 1012
Hpy188I	TCNGA	6 cut(s)	24, 217, 255, 293, 673, 703
Hpy188III	TCNNGA	8 cut(s)	64, 85, 335, 416, 580, 731, 855, 926
Hpy8I	GTNNAC	3 cut(s)	46, 983, 1012
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	101, 213, 341, 436
HpyCH4III	ACNGT	2 cut(s)	267, 816
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 644
HpyF3I	CTNAG	2 cut(s)	702, 912
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	39, 60
Hsp92II	CATG	6 cut(s)	238, 344, 389, 529, 954, 1010
HspAI	GCGC	1 cut(s)	842
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	66, 87, 288, 337
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	3 cut(s)	109, 514, 958
LweI	GCATC	4 cut(s)	707, 785, 919, 945
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	68, 89, 290, 339
MboI	GATC	4 cut(s)	66, 87, 288, 337
MboII	GAAGA	2 cut(s)	479, 926
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	640, 730
MlsI	TGGCCA	1 cut(s)	901
MluCI	AATT	4 cut(s)	532, 657, 869, 987
MluNI	TGGCCA	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	146, 510
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	901
MseI	TTAA	3 cut(s)	45, 357, 894
MslI	CAYNNNNRTG	2 cut(s)	417, 620
Msp20I	TGGCCA	1 cut(s)	901
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	3 cut(s)	79, 499, 570
MspR9I	CCNGG	2 cut(s)	570, 755
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	2 cut(s)	111, 644
NciI	CCSGG	1 cut(s)	570
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	66, 87, 288, 337
NlaIII	CATG	6 cut(s)	238, 344, 389, 529, 954, 1010
NlaIV	GGNNCC	2 cut(s)	201, 383
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	529, 1010
PciI	ACATGT	1 cut(s)	1006
PciSI	GCTCTTC	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	851
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	99, 504, 973
PleI	GAGTC	2 cut(s)	146, 510
PpsI	GAGTC	2 cut(s)	146, 510
PpuMI	RGGWCCY	1 cut(s)	199
PscI	ACATGT	1 cut(s)	1006
Psp124BI	GAGCTC	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	201, 383
PspPI	GGNCC	2 cut(s)	199, 908
PspPPI	RGGWCCY	1 cut(s)	199
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	2 cut(s)	684, 976
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	417, 620
SacI	GAGCTC	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	3 cut(s)	45, 357, 894
SatI	GCNGC	3 cut(s)	98, 503, 972
Sau3AI	GATC	4 cut(s)	66, 87, 288, 337
Sau96I	GGNCC	2 cut(s)	199, 908
SchI	GAGTC	2 cut(s)	146, 510
ScrFI	CCNGG	2 cut(s)	570, 755
SduI	GDGCHC	2 cut(s)	640, 730
SfaNI	GCATC	4 cut(s)	707, 785, 919, 945
SfcI	CTRYAG	2 cut(s)	680, 972
SinI	GGWCC	2 cut(s)	199, 908
SmiMI	CAYNNNNRTG	2 cut(s)	417, 620
SmlI	CTYRAG	2 cut(s)	194, 518
SmoI	CTYRAG	2 cut(s)	194, 518
Sse9I	AATT	4 cut(s)	532, 657, 869, 987
SsiI	CCGC	2 cut(s)	51, 605
SspI	AATATT	1 cut(s)	495
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	568, 753
TaaI	ACNGT	2 cut(s)	267, 816
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	417, 640, 724
TasI	AATT	4 cut(s)	532, 657, 869, 987
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	3 cut(s)	45, 357, 894
Tru9I	TTAA	3 cut(s)	45, 357, 894
TscAI	CASTG	2 cut(s)	640, 684
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	97, 502, 971
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	251, 288, 401, 402, 464, 926
TspGWI	ACGGA	3 cut(s)	343, 791, 968
TspRI	CASTG	2 cut(s)	640, 684
VpaK11BI	GGWCC	2 cut(s)	199, 908
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	2 cut(s)	529, 1010
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.