Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

4243041 .. 4246255

Gene Structure 3215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGGTGTTCATTCTCTGGTCTGAACGCTCTGTACGACGCCGTTAACGGCGGAGGTGACGTCTGGATCAACGAGAACCGGTTCAAGATCGTCAGGCAGCTCGGCGAAGGTGGCTTCGCCTTTGTCTTTTTGGTCAAGGAGGTCGTCCCCGACTCCTCCTCCTCTACCTCTCTCGCCAAGAAACTCAAGGACCCTTCTCACCTTTCTGATGATGGAACTTATGCCATGAAAAAAGTTCTCATTCAGAATAGCGAACAGTTGGAGTTGGTCAAGGAGGAGATCCGAGTTTCATCACTTTTCACTCATCCTAATCTGCTTCCCCTTCTTGATCATGCCATTATTTCCGTTAAGCCTACACAAGACCAATCTTGGAACCATGAAGCATATTTATTATTTCCAGTTCATCTCGATGGAACTTTACTGGATAATGCGAAGGTTATGAAAACTAAAAAGGAGTTCTATTCAACCTCAGATGTTCTTCAAATATTCCGTCAGCTTTGTGCAGGACTCAAGCACATGCACAATTTTGAACCACCATATGCACATAATGATATCAAACCCGGTAATGTCCTGATTACTCATAGAAAAGGGCAACCACCTCTAGCCATATTGATGGATTTTGGCAGTGCTCGACCTGCAAGGAAACAAATTCGCACTCGTTCTGAGGCACTGCAGTTGCAGGTATATCTTCTTTATCACCTCTGTTTTCTACATACGTGTGTGTGTGTGTGTTTTTTTCTTTCTTTTTTTTTCAAATTTTTCTTTTTCTTTTTTTGCAATAATTGCAAAATGTTTCAGCATGTAGAATACACACCTTTAAGCAACATATGTATTTCTATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

281

Amino Acids

32.04

Weight (kDa)

8.32

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 216	4.9e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	68 - 218	2.6e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	2 cut(s)	643, 670
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	74, 274
AcsI	RAATTY	2 cut(s)	648, 755
AcyI	GRCGYC	2 cut(s)	39, 60
AfaI	GTAC	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	716
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	85, 465, 482, 530, 754
AluBI	AGCT	2 cut(s)	100, 496
AluI	AGCT	2 cut(s)	100, 496
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	74, 274
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	648, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AsiGI	ACCGGT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	3 cut(s)	68, 191, 689
AvaII	GGWCC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	3 cut(s)	206, 404, 607
BceAI	ACGGC	2 cut(s)	26, 64
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	561
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	671
BfuAI	ACCTGC	2 cut(s)	643, 670
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 374
BmrFI	CCNGG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	170, 494
BpuMI	CCSGG	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	717
BsaHI	GRCGYC	2 cut(s)	39, 60
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 143, 173
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	398, 426
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	483, 654
BseNI	ACTGG	2 cut(s)	398, 426
BseRI	GAGGAG	4 cut(s)	145, 148, 151, 290
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	522
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	79, 561
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	66, 87, 279, 328
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	482, 655
BspLI	GGNNCC	2 cut(s)	192, 374
BspMAI	CTGCAG	1 cut(s)	675
BspMI	ACCTGC	2 cut(s)	643, 670
BspPI	GGATC	2 cut(s)	74, 274
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	398, 426
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	4 cut(s)	66, 87, 279, 328
BssNI	GRCGYC	2 cut(s)	39, 60
Bst4CI	ACNGT	1 cut(s)	258
BstACI	GRCGYC	2 cut(s)	39, 60
BstAPI	GCANNNNNTGC	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	717
BstDEI	CTNAG	2 cut(s)	469, 663
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	4 cut(s)	69, 90, 282, 331
BstMBI	GATC	4 cut(s)	66, 87, 279, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 635, 783
BstNSI	RCATGY	2 cut(s)	520, 803
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	671
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	2 cut(s)	631, 668
BtsIMutI	CAGTG	2 cut(s)	631, 668
BveI	ACCTGC	2 cut(s)	643, 670
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	5 cut(s)	226, 332, 377, 517, 800
CviJI	RGCY	5 cut(s)	100, 114, 352, 496, 605
CviKI_1	RGCY	5 cut(s)	100, 114, 352, 496, 605
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	469, 663
DpnI	GATC	4 cut(s)	68, 89, 281, 330
DpnII	GATC	4 cut(s)	66, 87, 279, 328
EciI	GGCGGA	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	553
FaeI	CATG	5 cut(s)	229, 335, 380, 520, 803
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	5 cut(s)	225, 331, 376, 516, 799
FauNDI	CATATG	2 cut(s)	538, 827
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	1 cut(s)	98
HapII	CCGG	2 cut(s)	79, 561
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	39, 60
Hin1II	CATG	5 cut(s)	229, 335, 380, 520, 803
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	152, 507
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	79, 561
HphI	GGTGA	3 cut(s)	68, 191, 689
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	6 cut(s)	24, 208, 246, 284, 472, 664
Hpy188III	TCNNGA	5 cut(s)	64, 85, 326, 407, 571
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	101, 204, 332, 427
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	2 cut(s)	60, 716
HpyCH4V	TGCA	8 cut(s)	503, 520, 542, 638, 673, 679, 777, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 635, 783
HpyF3I	CTNAG	2 cut(s)	469, 663
HpySE526I	ACGT	2 cut(s)	60, 716
Hsp92I	GRCGYC	2 cut(s)	39, 60
Hsp92II	CATG	5 cut(s)	229, 335, 380, 520, 803
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	66, 87, 279, 328
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	2 cut(s)	60, 716
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	68, 89, 281, 330
MboI	GATC	4 cut(s)	66, 87, 279, 328
MboII	GAAGA	2 cut(s)	470, 680
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	4 cut(s)	523, 648, 755, 781
MlyI	GAGTC	2 cut(s)	146, 501
MmeI	TCCRAC	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	4 cut(s)	45, 348, 818, 844
MslI	CAYNNNNRTG	3 cut(s)	408, 611, 717
MspI	CCGG	2 cut(s)	79, 561
MspR9I	CCNGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	111, 635, 783
NciI	CCSGG	1 cut(s)	561
NdeI	CATATG	2 cut(s)	538, 827
NdeII	GATC	4 cut(s)	66, 87, 279, 328
NlaIII	CATG	5 cut(s)	229, 335, 380, 520, 803
NlaIV	GGNNCC	2 cut(s)	192, 374
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	520, 803
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	146, 501
PpsI	GAGTC	2 cut(s)	146, 501
Ppu21I	YACGTR	1 cut(s)	717
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	192, 374
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	3 cut(s)	408, 611, 717
SaqAI	TTAA	4 cut(s)	45, 348, 818, 844
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	4 cut(s)	66, 87, 279, 328
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	146, 501
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	3 cut(s)	408, 611, 717
SmlI	CTYRAG	2 cut(s)	185, 509
SmoI	CTYRAG	2 cut(s)	185, 509
Sse9I	AATT	4 cut(s)	523, 648, 755, 781
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	2 cut(s)	63, 719
TaqI	TCGA	2 cut(s)	408, 631
TasI	AATT	4 cut(s)	523, 648, 755, 781
Tru1I	TTAA	4 cut(s)	45, 348, 818, 844
Tru9I	TTAA	4 cut(s)	45, 348, 818, 844
TscAI	CASTG	2 cut(s)	631, 675
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	5 cut(s)	242, 279, 392, 393, 455
TspGWI	ACGGA	2 cut(s)	334, 479
TspRI	CASTG	2 cut(s)	631, 675
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	648, 755
XceI	RCATGY	2 cut(s)	520, 803
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	602
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.