Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Reverse (-)

19841676 .. 19843084

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGGTGCACATTCTCTGGTTTGGGCGCTCTGTACGACGCCGTGAACGGCGGAGGCGATGTGTGGATTAACGAGAATCGGTTCAAGATCGTGAGGCAGCTCGGGGAAGGTGGGTTCGCTTATGTGTTTTTGGTCAAGGAGGTGGTCGCCGACTCCTCCGCCTCCGGCGGTGGTGGTCTCGCCAAGAAATTCAAGGATCCCTCTCATGTCTCAGATGATGGAACTTATGCTATGAAAAAAGTTCTCATTCAGAATAGTGAGCAGTTGGAGTTGGTGAAGGAAGAGATCCGTGTTTCTTCGCTGTTCAGTCATCCCAATCTGCTTCCGCTTCTTGATCATGCCATTATTGCCGTTAAGACAACACAAGAACAATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATCTGGATGGAACTTTACTGGACAATGCCAAGACTATGAAAGCTAAAAAGGAGTTCTTTTCCACCTCAGATGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTTAAGCATATGCACACTTTGGATCCACCAACTATGCACATAATGATATCAAACCTGGTAACGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

194

Amino Acids

21.3

Weight (kDa)

6.22

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	51, 159, 168, 326
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	5 cut(s)	191, 204, 280, 530, 543
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	85, 193, 488
AjnI	CCWGG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	3 cut(s)	100, 452, 502
AluI	AGCT	3 cut(s)	100, 452, 502
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	182, 214
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	5 cut(s)	191, 204, 280, 530, 543
Ama87I	CYCGRG	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	97, 499
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	196, 535
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	109, 511
BccI	CCATC	2 cut(s)	212, 410
BceAI	ACGGC	3 cut(s)	26, 64, 335
BciT130I	CCWGG	1 cut(s)	569
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	182, 214
BfoI	RGCGCY	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	515
BisI	GCNGC	2 cut(s)	98, 500
BlsI	GCNGC	2 cut(s)	99, 501
Bme1390I	CCNGG	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	3 cut(s)	198, 380, 537
BmrFI	CCNGG	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	2 cut(s)	404, 432
BseBI	CCWGG	1 cut(s)	569
BseGI	GGATG	2 cut(s)	310, 421
BseMII	CTCAG	2 cut(s)	225, 489
BseNI	ACTGG	2 cut(s)	404, 432
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	109, 511
BsgI	GTGCAG	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	165, 496
BsmAI	GTCTC	2 cut(s)	182, 214
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	5 cut(s)	87, 196, 285, 334, 535
BspACI	CCGC	4 cut(s)	51, 159, 168, 326
BspCNI	CTCAG	2 cut(s)	224, 488
BspLI	GGNNCC	3 cut(s)	198, 380, 537
BspPI	GGATC	5 cut(s)	191, 204, 280, 530, 543
BspTI	CTTAAG	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	404, 432
BssMI	GATC	5 cut(s)	87, 196, 285, 334, 535
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	211, 475
BstF5I	GGATG	2 cut(s)	310, 421
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	90, 199, 288, 337, 538
BstMAI	GTCTC	2 cut(s)	182, 214
BstMBI	GATC	5 cut(s)	87, 196, 285, 334, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	109, 511
BstX2I	RGATCY	3 cut(s)	196, 285, 535
BstYI	RGATCY	3 cut(s)	196, 285, 535
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	310, 421
CfoI	GCGC	1 cut(s)	29
CseI	GACGC	1 cut(s)	47
CsiI	ACCWGGT	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	206, 338, 383
CviJI	RGCY	3 cut(s)	100, 452, 502
CviKI_1	RGCY	3 cut(s)	100, 452, 502
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	211, 475
DpnI	GATC	5 cut(s)	89, 198, 287, 336, 537
DpnII	GATC	5 cut(s)	87, 196, 285, 334, 535
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	2 cut(s)	66, 148
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	561
FaeI	CATG	3 cut(s)	209, 341, 386
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	3 cut(s)	205, 337, 382
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	98, 500
FokI	GGATG	2 cut(s)	297, 428
Fsp4HI	GCNGC	2 cut(s)	98, 500
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	98, 500
HaeII	RGCGCY	1 cut(s)	30
HapII	CCGG	2 cut(s)	165, 496
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	209, 341, 386
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	76, 152
HpaII	CCGG	2 cut(s)	165, 496
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	9, 46
Hpy188I	TCNGA	4 cut(s)	214, 252, 478, 581
Hpy188III	TCNNGA	4 cut(s)	85, 91, 332, 413
Hpy8I	GTNNAC	2 cut(s)	9, 46
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	101, 271
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	9, 509, 526, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	211, 475
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	209, 341, 386
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	87, 196, 285, 334, 535
LpnPI	CCDG	8 cut(s)	3, 178, 398, 413, 417, 495, 509, 554
Lsp1109I	GCAGC	2 cut(s)	109, 511
MabI	ACCWGGT	1 cut(s)	567
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	5 cut(s)	89, 198, 287, 336, 537
MboI	GATC	5 cut(s)	87, 196, 285, 334, 535
MboII	GAAGA	3 cut(s)	288, 293, 476
MflI	RGATCY	3 cut(s)	196, 285, 535
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	47, 87, 133, 166, 172, 211, 484
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	3 cut(s)	69, 354, 516
MslI	CAYNNNNRTG	1 cut(s)	414
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	2 cut(s)	165, 496
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	5 cut(s)	87, 196, 285, 334, 535
NlaIII	CATG	3 cut(s)	209, 341, 386
NlaIV	GGNNCC	3 cut(s)	198, 380, 537
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	99, 501
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp1406I	AACGTT	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	198, 380, 537
PsuI	RGATCY	3 cut(s)	196, 285, 535
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	69, 354, 516
SatI	GCNGC	2 cut(s)	98, 500
Sau3AI	GATC	5 cut(s)	87, 196, 285, 334, 535
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	8 cut(s)	102, 112, 144, 454, 476, 504, 570, 578
SexAI	ACCWGGT	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	51, 159, 168, 326
SspI	AATATT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	567
TaiI	ACGT	1 cut(s)	578
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	69, 354, 516
Tru9I	TTAA	3 cut(s)	69, 354, 516
TseI	GCWGC	2 cut(s)	97, 499
TspDTI	ATGAA	4 cut(s)	248, 398, 399, 461
TspGWI	ACGGA	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.