Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009559

Physical Location & Seq

Genomic Coordinates Forward (+)

64303833 .. 64306586

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGTGTTCATTCTCTGGTCTGAACGCTCTGTACGACGCCGTTAACGGCGGAGGTGACGTCTGGATCAACGAGAACCGGTTCAAGATCGTCAGGCAGCTCGGCGAAGGTGGCTTCGCCTTTGTCTTTTTGGTCAAGGAGGTCGTCCCCGACTCCTCCTCTACCTCTCTCGCCAAGAAACTCAAGGACCCTTCTCACCTTTCTGATGATGGAACTTATGCCATGAAAAAAGTTCTCATTCAGAATAGCGAACAGTTGGAGTTGGTCAAGGAGGAGATTCGAGTTTCATCACTTTTCACTCATCCTAATCTGCTTCCCCTTCTTGATCATGCCATTATTTCCGTTAAGCCTACACAAGACCAATCTTGGAACCATGAAGCATATTTATTATTTCCAGTTCATCTCGATGGAACTTTACTGGATAATGCGAAGGTTATGAAAACTAAAAAGGAGTTCTATTCAACCTCAGACGTTCTTCAAATATTCCGGCAGCTTTGTGCAGGACTCAAGCACATGCACAATTTTGAACCACCATATGCACATAATGATATCAAACCCGGTAATGTCCTGATTAGTCATAGAAAAGGGCAACCACCTCTAGCCATATTGATGGATTTTGGCAGTGCTCGACCTGCAAGGAAACAAATTCGCACTCGTTCAGAGGCACTGCAGTTACAGGAATGGGCATCTGAGCACTGTTCTGCACCATTTCGAGCTCCAGAGTTGTGGGATTGCCCAAGCCAGGCAGATATTGACGAGAGAACGGATATATGGTCTTTGGGATGCACTTTGTATGCCATACTGTATGGAGTATCTCCATTTGAATATGCGCTTGGTGAATCTGGAGGAAGCCTACAATTGGCAATAGTCAATGTGCAGATTAAGTGGCCAGCTGGACCTAAGCCTCCATATCCAGATGCTCTTCATCAGTTTATTACATGGATGCTTCAGCCACAAGCTGCAGTCCGTCCACGAATTGACGATATCATAATACATGTGGACAAGTTGATTTCAAAGTTCTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

343

Amino Acids

38.34

Weight (kDa)

6.31

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	30 - 330	5.2e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	67 - 332	8.8e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08160 AT5G08160
fragaria_vesca	FvH4_5g13060
malus_domestica	MD06G1207400.v1.1 MD14G1217900.v1.1
prunus_persica	Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1 Prupe.5G211800_v2.0.a1
pyrus_communis	pycom06g18530 pycom14g18070
rosa_chinensis	RchiOBHm_Chr7g0184071
rosa_laevigata	RLG00000005003
rosa_multiflora	Rmu_sc0004712.1_g000009 Rmu_sc0007533.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269910
rosa_rugosa	Rorug06G0462500 Rorug06G0462600
rosa_samantha	Rh7AG083100 Rh7BG063900 Rh7CG064600 Rh7DG064100
rosa_wichuraiana	Rw7G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	640
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	887
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	932
AcyI	GRCGYC	2 cut(s)	39, 60
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	742, 859
AflIII	ACRYGT	1 cut(s)	994
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	6 cut(s)	85, 462, 479, 527, 824, 1014
AjnI	CCWGG	1 cut(s)	741
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AluBI	AGCT	5 cut(s)	100, 493, 716, 893, 959
AluI	AGCT	5 cut(s)	100, 493, 716, 893, 959
Alw21I	GWGCWC	3 cut(s)	628, 696, 718
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	97, 490, 959
ApoI	RAATTY	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	2 cut(s)	187, 896
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	3 cut(s)	68, 188, 848
AvaII	GGWCC	2 cut(s)	187, 896
BalI	TGGCCA	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	718
Bbv12I	GWGCWC	3 cut(s)	628, 696, 718
BbvI	GCAGC	3 cut(s)	109, 502, 946
BccI	CCATC	3 cut(s)	203, 401, 604
BceAI	ACGGC	2 cut(s)	26, 64
BciT130I	CCWGG	1 cut(s)	743
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	558
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	2 cut(s)	668, 960
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	98, 491, 960
BlsI	GCNGC	3 cut(s)	99, 492, 961
Bme1390I	CCNGG	2 cut(s)	558, 743
Bme18I	GGWCC	2 cut(s)	187, 896
BmgT120I	GGNCC	2 cut(s)	187, 896
BmiI	GGNNCC	2 cut(s)	189, 371
BmrFI	CCNGG	2 cut(s)	558, 743
BmsI	GCATC	4 cut(s)	695, 773, 907, 933
BpmI	CTGGAG	2 cut(s)	702, 864
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	167, 491
BpuMI	CCSGG	1 cut(s)	558
BsaHI	GRCGYC	2 cut(s)	39, 60
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	742, 859
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	395, 423
BseBI	CCWGG	1 cut(s)	743
BseGI	GGATG	3 cut(s)	301, 788, 948
BseLI	CCNNNNNNNGG	2 cut(s)	742, 859
BseMII	CTCAG	2 cut(s)	480, 681
BseNI	ACTGG	2 cut(s)	395, 423
BseRI	GAGGAG	3 cut(s)	145, 148, 287
BseXI	GCAGC	3 cut(s)	109, 502, 946
BsgI	GTGCAG	3 cut(s)	519, 687, 896
BshFI	GGCC	1 cut(s)	889
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	628, 696, 718
BsiSI	CCGG	3 cut(s)	79, 487, 558
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	742, 859
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	889
Bsp1286I	GDGCHC	3 cut(s)	628, 696, 718
Bsp143I	GATC	3 cut(s)	66, 87, 325
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	2 cut(s)	479, 682
BspLI	GGNNCC	2 cut(s)	189, 371
BspMAI	CTGCAG	2 cut(s)	672, 964
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	395, 423
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	3 cut(s)	66, 87, 325
BssNI	GRCGYC	2 cut(s)	39, 60
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	3 cut(s)	255, 698, 804
Bst6I	CTCTTC	1 cut(s)	927
BstACI	GRCGYC	2 cut(s)	39, 60
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	3 cut(s)	466, 690, 900
BstF5I	GGATG	3 cut(s)	301, 788, 948
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	3 cut(s)	69, 90, 328
BstMBI	GATC	3 cut(s)	66, 87, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 632
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	517, 998
BstSCI	CCNGG	2 cut(s)	556, 741
BstSFI	CTRYAG	2 cut(s)	668, 960
BstV1I	GCAGC	3 cut(s)	109, 502, 946
BstXI	CCANNNNNNTGG	2 cut(s)	610, 726
BsuRI	GGCC	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	301, 788, 948
BtsI	GCAGTG	2 cut(s)	628, 665
BtsIMutI	CAGTG	3 cut(s)	628, 665, 694
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	891
CfoI	GCGC	1 cut(s)	832
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	187, 896
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	6 cut(s)	223, 329, 374, 514, 939, 995
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	466, 690, 900
DpnI	GATC	3 cut(s)	68, 89, 327
DpnII	GATC	3 cut(s)	66, 87, 325
EaeI	YGGCCR	1 cut(s)	887
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	718
Eco32I	GATATC	2 cut(s)	550, 985
Eco47I	GGWCC	2 cut(s)	187, 896
Eco53kI	GAGCTC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	741
EcoRV	GATATC	2 cut(s)	550, 985
EcoT38I	GRGCYC	1 cut(s)	718
FaeI	CATG	6 cut(s)	226, 332, 377, 517, 942, 998
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	222, 328, 373, 513, 938, 994
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	98, 491, 960
FokI	GGATG	3 cut(s)	288, 795, 955
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	3 cut(s)	98, 491, 960
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	3 cut(s)	98, 491, 960
GsuI	CTGGAG	2 cut(s)	702, 864
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	3 cut(s)	79, 487, 558
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	832
Hin1I	GRCGYC	2 cut(s)	39, 60
Hin1II	CATG	6 cut(s)	226, 332, 377, 517, 942, 998
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	152, 277, 504, 839
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	3 cut(s)	79, 487, 558
HphI	GGTGA	3 cut(s)	68, 188, 848
Hpy166II	GTNNAC	3 cut(s)	46, 971, 1000
Hpy188I	TCNGA	6 cut(s)	24, 205, 243, 469, 661, 691
Hpy188III	TCNNGA	8 cut(s)	64, 85, 323, 404, 568, 719, 843, 914
Hpy8I	GTNNAC	3 cut(s)	46, 971, 1000
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	101, 201, 329, 424
HpyCH4III	ACNGT	3 cut(s)	255, 698, 804
HpyCH4IV	ACGT	2 cut(s)	60, 471
HpyCH4V	TGCA	9 cut(s)	500, 517, 539, 635, 670, 704, 786, 877, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 632
HpyF3I	CTNAG	3 cut(s)	466, 690, 900
HpySE526I	ACGT	2 cut(s)	60, 471
Hsp92I	GRCGYC	2 cut(s)	39, 60
Hsp92II	CATG	6 cut(s)	226, 332, 377, 517, 942, 998
HspAI	GCGC	1 cut(s)	830
Ksp22I	TGATCA	1 cut(s)	325
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	66, 87, 325
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	3 cut(s)	109, 502, 946
LweI	GCATC	4 cut(s)	695, 773, 907, 933
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	2 cut(s)	60, 471
MaeIII	GTNAC	2 cut(s)	56, 672
MalI	GATC	3 cut(s)	68, 89, 327
MboI	GATC	3 cut(s)	66, 87, 325
MboII	GAAGA	2 cut(s)	467, 914
MfeI	CAATTG	1 cut(s)	857
MhlI	GDGCHC	3 cut(s)	628, 696, 718
MlsI	TGGCCA	1 cut(s)	889
MluCI	AATT	4 cut(s)	520, 645, 857, 975
MluNI	TGGCCA	1 cut(s)	889
MlyI	GAGTC	2 cut(s)	146, 498
MmeI	TCCRAC	1 cut(s)	237
Mox20I	TGGCCA	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	889
MseI	TTAA	3 cut(s)	45, 345, 882
MslI	CAYNNNNRTG	2 cut(s)	405, 608
Msp20I	TGGCCA	1 cut(s)	889
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	3 cut(s)	79, 487, 558
MspR9I	CCNGG	2 cut(s)	558, 743
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	111, 632
NciI	CCSGG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	66, 87, 325
NlaIII	CATG	6 cut(s)	226, 332, 377, 517, 942, 998
NlaIV	GGNNCC	2 cut(s)	189, 371
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	517, 998
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	277, 839
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	99, 492, 961
PleI	GAGTC	2 cut(s)	146, 498
PpsI	GAGTC	2 cut(s)	146, 498
PpuMI	RGGWCCY	1 cut(s)	187
PscI	ACATGT	1 cut(s)	994
Psp124BI	GAGCTC	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	2 cut(s)	189, 371
PspPI	GGNCC	2 cut(s)	187, 896
PspPPI	RGGWCCY	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	2 cut(s)	672, 964
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	405, 608
SacI	GAGCTC	1 cut(s)	718
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	3 cut(s)	45, 345, 882
SatI	GCNGC	3 cut(s)	98, 491, 960
Sau3AI	GATC	3 cut(s)	66, 87, 325
Sau96I	GGNCC	2 cut(s)	187, 896
SchI	GAGTC	2 cut(s)	146, 498
ScrFI	CCNGG	2 cut(s)	558, 743
SduI	GDGCHC	3 cut(s)	628, 696, 718
SfaNI	GCATC	4 cut(s)	695, 773, 907, 933
SfcI	CTRYAG	2 cut(s)	668, 960
SinI	GGWCC	2 cut(s)	187, 896
SmiMI	CAYNNNNRTG	2 cut(s)	405, 608
SmlI	CTYRAG	2 cut(s)	182, 506
SmoI	CTYRAG	2 cut(s)	182, 506
Sse9I	AATT	4 cut(s)	520, 645, 857, 975
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	556, 741
TaaI	ACNGT	3 cut(s)	255, 698, 804
TaiI	ACGT	2 cut(s)	63, 474
TaqI	TCGA	4 cut(s)	280, 405, 628, 712
TasI	AATT	4 cut(s)	520, 645, 857, 975
TfiI	GAWTC	2 cut(s)	277, 839
Tru1I	TTAA	3 cut(s)	45, 345, 882
Tru9I	TTAA	3 cut(s)	45, 345, 882
TscAI	CASTG	3 cut(s)	628, 672, 701
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	97, 490, 959
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	239, 276, 389, 390, 452, 914
TspGWI	ACGGA	3 cut(s)	331, 779, 956
TspRI	CASTG	3 cut(s)	628, 672, 701
VpaK11BI	GGWCC	2 cut(s)	187, 896
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	2 cut(s)	517, 998
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	599
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.