AT5G08580

Calcium-binding EF hand family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
2780450 .. 2783173
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08580.1

Sequence Viewer

Length: 1176 bp
ATGAGTAAAGCTTCGGTGATCCTATACATTACGGTAGGAATCCTGGTGCTCTTCCTCGTCTCTTATTCACCGAAGAAGAAGGGTGACCACGATCACCACCATGGTGGTCACAATCAACATCACCGCTTAAAACTCCGGTCTTCTTTCAATTTCAAACCCACTCGTCACGATCCAGTTCCGTTTGATCCTCTTGTCGCCGACATGGAGCGCCGCCGCGAGGATAAGGAGTGGGAGCGACAGTACATTGAGCATTCTCACCCGGAGCTTGTCTCTCATTCTCAGAAAGAAACAACCGGTGGTGGACATGAACATGCACCTGGTCACGAGTCGCAGCCTGAGTGGGAAGAATTCATGGATGCTGAGGATTACTTAAATGATGAGGAGAAGTTCAATGTCACTGATAGGCTGATATTGTTGTTTCCGAAGATTGATGTTTCTCCTGCTGATGGGTTTATGACGGAGAGTGAATTGACTGAGTGGACTATGCAGTCTTCTGCCAAGGAAGTTGTGCACAGAACTCAACGAGACCTGGATGTTCATGATAGAAACAAAGATGGTTTTATTTCTTTCTCTGAATATGAACCACCGTCTTGGGTCCGTAAGTCGGATAATAATTCGTTTGGCTATGATATGGGCTGGTGGAAGGAGGAGCATTTTAATGCATCAGATGCAAATGGTGATGGTCTTCTGAATTTAACAGAGTTTAACGACTTTCTGCATCCTGCTGACACCAAGAACCCAAAGTTACTGTTATGGTTATGCAAGGAGGAAGTAAGAGAAAGGGATTCAGATAAAGATGGGAAGATCAGTTTCGAAGAGTTTTTCCACGGCCTCTTTGACACTGTAAGGAACTACGAAGAAGACAATCACAATTCTACGCATCCTTACCATGACTTGCCTGAAGGCCCAGCAAAGCAGTTGTTTTCTCAGCTTGACAAAAATGATGACGGGTACTTATCAGACGTTGAATTGCTTCCCATTATCAGTAAAATCCATCCTACTGAGCATTATTATGCAAAGCAACAAGCTGATTATATAATATCACAGGCGGATTCAGACAAAGATAGACGTTTGACTTTGGCAGAGATGATTGAGCATCCATACGTCTTCTACAGTGCCATTTTCGATGAAGATGACACTGATGATGATTATGGTTTCCACGATGAATTCCGCTAG

Protein Analysis

391

Amino Acids

45.84

Weight (kDa)

4.91

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 217 - 276 4e-06 EF-hand domain pair
EF-hand_7 PF13499 305 - 365 7.2e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 487
AccII CGCG 1 cut(s) 216
AciI CCGC 5 cut(s) 124, 211, 214, 1049, 1171
AclWI GGATC 3 cut(s) 13, 164, 179
AcsI RAATTY 3 cut(s) 347, 691, 1166
AcuI CTGAAG 1 cut(s) 921
AfaI GTAC 2 cut(s) 242, 953
AfiI CCNNNNNNNGG 3 cut(s) 217, 446, 604
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 4 cut(s) 148, 154, 391, 968
AjnI CCWGG 3 cut(s) 42, 316, 528
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 4 cut(s) 11, 265, 931, 1028
AluI AGCT 4 cut(s) 11, 265, 931, 1028
Alw21I GWGCWC 2 cut(s) 51, 513
Alw26I GTCTC 3 cut(s) 64, 274, 519
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 3 cut(s) 13, 164, 179
AoxI GGCC 2 cut(s) 829, 904
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 3 cut(s) 347, 691, 1166
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 972
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 595, 905
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 7 cut(s) 28, 60, 86, 95, 113, 248, 689
AsuII TTCGAA 1 cut(s) 813
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 513
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 5 cut(s) 132, 483, 677, 867, 1099
Bbv12I GWGCWC 2 cut(s) 51, 513
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 343
BccI CCATC 5 cut(s) 440, 548, 674, 791, 1002
BceAI ACGGC 1 cut(s) 844
BciT130I CCWGG 3 cut(s) 44, 318, 530
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 64, 274, 519
BfaI CTAG 1 cut(s) 1174
BfmI CTRYAG 1 cut(s) 1111
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 3 cut(s) 211, 214, 332
BlsI GCNGC 3 cut(s) 212, 215, 333
Bme1390I CCNGG 4 cut(s) 44, 260, 318, 530
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 595, 905
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 4 cut(s) 44, 260, 318, 530
BmsI GCATC 6 cut(s) 346, 658, 671, 727, 889, 1105
BpiI GAAGAC 5 cut(s) 132, 483, 677, 867, 1099
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu10I CCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 100, 498, 826
BsaWI WCCGGW 2 cut(s) 135, 293
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 446, 604
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 3 cut(s) 44, 318, 530
BseDI CCNNGG 3 cut(s) 100, 498, 826
BseGI GGATG 6 cut(s) 361, 538, 718, 880, 994, 1096
BseLI CCNNNNNNNGG 3 cut(s) 217, 446, 604
BseMII CTCAG 6 cut(s) 293, 327, 351, 465, 941, 993
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 395, 662
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 907
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 831, 906
BshTI ACCGGT 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 51, 513
BsiSI CCGG 3 cut(s) 136, 260, 294
BslI CCNNNNNNNGG 3 cut(s) 217, 446, 604
BsmAI GTCTC 3 cut(s) 64, 274, 519
BsmBI CGTCTC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 831, 906
Bso31I GGTCTC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 813
Bsp1286I GDGCHC 2 cut(s) 51, 513
Bsp143I GATC 5 cut(s) 18, 91, 169, 184, 804
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 5 cut(s) 124, 211, 214, 1049, 1171
BspANI GGCC 2 cut(s) 831, 906
BspCNI CTCAG 6 cut(s) 292, 328, 352, 466, 940, 994
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 3 cut(s) 13, 164, 179
BspQI GCTCTTC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 813
BspTNI GGTCTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 100, 498, 826
BssMI GATC 5 cut(s) 18, 91, 169, 184, 804
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 100, 498
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 44, 318, 530
Bst4CI ACNGT 6 cut(s) 34, 240, 588, 750, 844, 1115
Bst6I CTCTTC 2 cut(s) 56, 810
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 813
BstDEI CTNAG 6 cut(s) 279, 336, 360, 474, 927, 1002
BstDSI CCRYGG 2 cut(s) 100, 826
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 6 cut(s) 361, 538, 718, 880, 994, 1096
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 5 cut(s) 21, 94, 172, 187, 807
BstMAI GTCTC 3 cut(s) 64, 274, 519
BstMBI GATC 5 cut(s) 18, 91, 169, 184, 804
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 3 cut(s) 44, 318, 530
BstNSI RCATGY 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 42, 258, 316, 528
BstSFI CTRYAG 1 cut(s) 1111
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 5 cut(s) 132, 483, 677, 867, 1099
BstXI CCANNNNNNTGG 2 cut(s) 104, 591
BsuRI GGCC 2 cut(s) 831, 906
BtgI CCRYGG 2 cut(s) 100, 826
BtsCI GGATG 6 cut(s) 361, 538, 718, 880, 994, 1096
BtsIMutI CAGTG 4 cut(s) 396, 840, 1120, 1137
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 595, 905
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 2 cut(s) 241, 952
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 7 cut(s) 101, 202, 305, 311, 352, 539, 890
CviQI GTAC 2 cut(s) 241, 952
DdeI CTNAG 6 cut(s) 279, 336, 360, 474, 927, 1002
DpnI GATC 5 cut(s) 20, 93, 171, 186, 806
DpnII GATC 5 cut(s) 18, 91, 169, 184, 804
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 56, 810
EarI CTCTTC 2 cut(s) 56, 810
EciI GGCGGA 1 cut(s) 1064
Eco130I CCWWGG 2 cut(s) 100, 498
Eco31I GGTCTC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 921
Eco91I GGTNACC 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 83
EcoRI GAATTC 2 cut(s) 347, 1166
EcoRII CCWGG 3 cut(s) 42, 316, 528
EcoT14I CCWWGG 2 cut(s) 100, 498
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 2 cut(s) 100, 498
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 7 cut(s) 104, 205, 308, 314, 355, 542, 893
FatI CATG 7 cut(s) 100, 201, 304, 310, 351, 538, 889
Fnu4HI GCNGC 3 cut(s) 211, 214, 332
FokI GGATG 6 cut(s) 368, 545, 705, 867, 981, 1083
Fsp4HI GCNGC 3 cut(s) 211, 214, 332
FspBI CTAG 1 cut(s) 1174
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 211, 214, 332
GsaI CCCAGC 1 cut(s) 911
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 2 cut(s) 831, 906
HapII CCGG 3 cut(s) 136, 260, 294
HhaI GCGC 1 cut(s) 210
Hin1II CATG 7 cut(s) 104, 205, 308, 314, 355, 542, 893
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 4 cut(s) 39, 326, 785, 1052
HpaII CCGG 3 cut(s) 136, 260, 294
HphI GGTGA 7 cut(s) 28, 60, 86, 95, 113, 248, 689
Hpy166II GTNNAC 3 cut(s) 302, 480, 511
Hpy188I TCNGA 9 cut(s) 282, 423, 574, 607, 667, 690, 790, 961, 1057
Hpy188III TCNNGA 3 cut(s) 167, 323, 539
Hpy8I GTNNAC 3 cut(s) 302, 480, 511
HpyAV CCTTC 3 cut(s) 73, 637, 896
HpyCH4III ACNGT 6 cut(s) 34, 240, 588, 750, 844, 1115
HpyCH4IV ACGT 3 cut(s) 963, 1069, 1104
HpyCH4V TGCA 8 cut(s) 314, 487, 511, 662, 671, 718, 762, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 6 cut(s) 279, 336, 360, 474, 927, 1002
HpySE526I ACGT 3 cut(s) 963, 1069, 1104
Hsp92II CATG 7 cut(s) 104, 205, 308, 314, 355, 542, 893
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 5 cut(s) 18, 91, 169, 184, 804
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 4 cut(s) 205, 232, 262, 649
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 6 cut(s) 346, 658, 671, 727, 889, 1105
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 1 cut(s) 1174
MaeII ACGT 3 cut(s) 963, 1069, 1104
MaeIII GTNAC 6 cut(s) 83, 107, 164, 320, 394, 744
MalI GATC 5 cut(s) 20, 93, 171, 186, 806
MboI GATC 5 cut(s) 18, 91, 169, 184, 804
MhlI GDGCHC 2 cut(s) 51, 513
MluCI AATT 8 cut(s) 148, 347, 467, 613, 691, 871, 968, 1166
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 8 cut(s) 65, 198, 211, 355, 373, 640, 760, 842
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 1 cut(s) 972
MseI TTAA 5 cut(s) 128, 371, 657, 695, 705
MslI CAYNNNNRTG 5 cut(s) 99, 102, 309, 657, 1011
MspI CCGG 3 cut(s) 136, 260, 294
MspR9I CCNGG 4 cut(s) 44, 260, 318, 530
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 3 cut(s) 44, 318, 530
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 668
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 1 cut(s) 100
NdeII GATC 5 cut(s) 18, 91, 169, 184, 804
NlaIII CATG 7 cut(s) 104, 205, 308, 314, 355, 542, 893
NlaIV GGNNCC 1 cut(s) 596
NmuCI GTSAC 5 cut(s) 83, 107, 164, 320, 394
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 314
NspV TTCGAA 1 cut(s) 813
OliI CACNNNNGTG 1 cut(s) 102
PagI TCATGA 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 56
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 3 cut(s) 39, 785, 1052
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 3 cut(s) 212, 215, 333
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 42, 316, 528
PspEI GGTNACC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 3 cut(s) 42, 316, 528
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 2 cut(s) 595, 905
RsaI GTAC 2 cut(s) 242, 953
RsaNI GTAC 2 cut(s) 241, 952
RseI CAYNNNNRTG 5 cut(s) 99, 102, 309, 657, 1011
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 5 cut(s) 128, 371, 657, 695, 705
SatI GCNGC 3 cut(s) 211, 214, 332
Sau3AI GATC 5 cut(s) 18, 91, 169, 184, 804
Sau96I GGNCC 2 cut(s) 595, 905
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 44, 260, 318, 530
SduI GDGCHC 2 cut(s) 51, 513
SetI ASST 9 cut(s) 13, 267, 319, 531, 933, 966, 1030, 1072, 1107
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 6 cut(s) 346, 658, 671, 727, 889, 1105
SfcI CTRYAG 1 cut(s) 1111
SfuI TTCGAA 1 cut(s) 813
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 5 cut(s) 99, 102, 309, 657, 1011
Sse9I AATT 8 cut(s) 148, 347, 467, 613, 691, 871, 968, 1166
SsiI CCGC 5 cut(s) 124, 211, 214, 1049, 1171
SspMI CTAG 1 cut(s) 1174
StyD4I CCNGG 4 cut(s) 42, 258, 316, 528
StyI CCWWGG 2 cut(s) 100, 498
TaaI ACNGT 6 cut(s) 34, 240, 588, 750, 844, 1115
TaiI ACGT 3 cut(s) 966, 1072, 1107
TaqI TCGA 2 cut(s) 813, 1125
TasI AATT 8 cut(s) 148, 347, 467, 613, 691, 871, 968, 1166
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 213, 216
TfiI GAWTC 3 cut(s) 39, 785, 1052
Tru1I TTAA 5 cut(s) 128, 371, 657, 695, 705
Tru9I TTAA 5 cut(s) 128, 371, 657, 695, 705
TscAI CASTG 4 cut(s) 403, 847, 1120, 1144
TseFI GTSAC 5 cut(s) 83, 107, 164, 320, 394
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 5 cut(s) 83, 107, 164, 320, 394
TspDTI ATGAA 5 cut(s) 321, 340, 527, 594, 1143
TspGWI ACGGA 3 cut(s) 168, 473, 587
TspRI CASTG 4 cut(s) 403, 847, 1120, 1144
VneI GTGCAC 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 3 cut(s) 347, 691, 1166
XceI RCATGY 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 972
XspI CTAG 1 cut(s) 1174
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.