MD13G1002500.v1.1

EF hand

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
149605 .. 153342
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1002500.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGTGAGGCCGTCCGTCTCAGTAATCATATACTCAGCAATTGCAGTGCTTGTCCTCTTGCTCATTTCCCACTCCCCCAAGAAACCCGGCAACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACCTTCTCTCCTCCCCTCCACCACCATAACCCCATCCCCTTCGACCCTCTCGTTGCCGACATTGAGCGCCGCCGCGAGGACCGAAAGTGGGAGCAGCAGCACTTCGATCATGCCTTCAACGCCTCCCACCACTCCGCCCCCGCCGCCGAATCTCAGCCCGAGTGGGAAGACTTCATGGACGCTGAGGATTACTTGAACGACGACGAGAGGTTCAACGTCACCAGCAGGTTGCTCTTGTTGTTTCCTAAGGTTGATGTCGACCCGGCTGATGGATTCGTCACCGAGCACGAGTTGACTCAGTGGAACTTGAACCAGGCCCAGAGGGAAGTCTTGCATCGGACTGAGAGGGATATGGAGCTTCACGACAAGAATCTTGACGGCTTTGTTTCCTTTGCTGAGTATCAGCCCCCGAGTTGGGCTCAGAATGCAGATAACAGTTCTTTTGGCTATGATATGGGTTGGTGGAAAGAGGAGCATTTTAATGCATCAGATGCAAATGGAGATGGTCTTCTTAATTTAACCGAGTTCAACGACTTTCTACACCCAGCTGACAGCAAAAACCCAAAGCTACTTACGTGGTTGTGCAGGGAGGAAGTAAGGGAAAGGGACACCGACAAAGATGAAAAAATTAACTTCAAAGAATTCTTCCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAGATCACAATTCCACACATCAGTCTGATGATTCGATGGAGTCCCCAGCTAGAAATTTGTTCGCTCAGCTTGACAAAGATGGTGACGGTTATTTGTCGGATGAGGAGATACTTCCTATTATTGGAAAGATACATCCATCAGAACATTACTATGCAAAACAACAAGCAGATTACATTATATCACAGGCTGATACGGATAAAGACGGGCGACTAACGCTGGGAGAGATGATAGAGAACCCATATGTATTTTACAGCGCTATTTTCAGTGACGACGAGGAAGAGGACTATGGGTACCATGATGAGACGCGGAAGAGTTCAAAATCTTTGTTGTTGGTTTTGTTTTTGTTTGTTGATATGGAACTAGATTATCAGATTATGAGAGAGAGTGATTCAACCTCAAGGGGGATTGGTGCCCCATGGCTGGCTCGGTTGGTTATCTGGAGCCATTTGGAAGAAGGATTTATTTATTTGATAGAGCTGCTTGACAATCGTCCTACTCGCTGTAAACATAAATGTAATAGGCAGACTGGTGAAGGAAGAAGAACATTTTTATCATTGTTATTTAAGATTGTTTGGCAGTCAAGTCGAGTTTTACCGTGTCTTCGGCAAGTTACAGTTTAA

Protein Analysis

478

Amino Acids

55.76

Weight (kDa)

5.04

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARC_Ca_bdg PF10591 236 - 347 8.1e-06 Secreted protein acidic and rich in cysteine Ca binding region
EF-hand_7 PF13499 288 - 349 4.8e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 1104
AccB1I GGYRCC 2 cut(s) 1104, 1223
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 387
AccII CGCG 2 cut(s) 204, 1120
AcsI RAATTY 2 cut(s) 770, 868
AfaI GTAC 1 cut(s) 1106
AfeI AGCGCT 1 cut(s) 1069
AfiI CCNNNNNNNGG 8 cut(s) 205, 217, 398, 543, 544, 935, 1215, 1234
AgsI TTSAA 8 cut(s) 247, 325, 343, 439, 658, 766, 1131, 1206
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 7 cut(s) 115, 487, 677, 697, 863, 883, 1291
AluI AGCT 7 cut(s) 115, 487, 677, 697, 863, 883, 1291
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 22, 1109
Ama87I CYCGRG 2 cut(s) 287, 538
Aor51HI AGCGCT 1 cut(s) 1069
AoxI GGCC 3 cut(s) 8, 444, 781
ApeKI GCWGC 3 cut(s) 223, 226, 1291
ApoI RAATTY 2 cut(s) 770, 868
Asp718I GGTACC 1 cut(s) 1104
AspLEI GCGC 2 cut(s) 198, 1070
AspS9I GGNCC 2 cut(s) 208, 445
AsuC2I CCSGG 2 cut(s) 87, 392
AsuHPI GGTGA 7 cut(s) 16, 121, 340, 400, 808, 908, 1355
AvaI CYCGRG 2 cut(s) 287, 538
AvaII GGWCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 1104, 1223
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 3 cut(s) 303, 629, 1406
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 235, 238, 1278
BccI CCATC 6 cut(s) 170, 392, 626, 844, 887, 958
BceAI ACGGC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 1379, 1413
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 2 cut(s) 87, 392
BcoDI GTCTC 2 cut(s) 22, 1109
BfaI CTAG 2 cut(s) 864, 1175
BfoI RGCGCY 2 cut(s) 199, 1071
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 7 cut(s) 106, 199, 202, 224, 227, 273, 1292
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 7 cut(s) 107, 200, 203, 225, 228, 274, 1293
Bme1390I CCNGG 3 cut(s) 87, 392, 443
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 2 cut(s) 287, 538
BmgT120I GGNCC 2 cut(s) 208, 445
BmiI GGNNCC 3 cut(s) 1106, 1225, 1256
BmrFI CCNGG 3 cut(s) 87, 392, 443
BmsI GCATC 3 cut(s) 472, 610, 623
BoxI GACNNNNGTC 1 cut(s) 1302
BpiI GAAGAC 3 cut(s) 303, 629, 1406
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 1273
Bpu10I CCTNAGC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 879
BpuEI CTTGAG 2 cut(s) 95, 1195
BpuMI CCSGG 2 cut(s) 87, 392
BsaAI YACGTR 1 cut(s) 705
BsaJI CCNNGG 2 cut(s) 778, 1229
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 8 cut(s) 205, 217, 398, 543, 544, 935, 1215, 1234
Bse1I ACTGG 1 cut(s) 1345
Bse21I CCTNAGG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 778, 1229
BseGI GGATG 3 cut(s) 162, 919, 946
BseLI CCNNNNNNNGG 8 cut(s) 205, 217, 398, 543, 544, 935, 1215, 1234
BseMII CTCAG 9 cut(s) 33, 48, 296, 303, 440, 462, 516, 563, 893
BseNI ACTGG 1 cut(s) 1345
BseRI GAGGAG 3 cut(s) 129, 614, 932
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 3 cut(s) 235, 238, 1278
BseYI CCCAGC 3 cut(s) 673, 859, 1030
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 2 cut(s) 204, 1120
BshFI GGCC 3 cut(s) 10, 446, 783
BshNI GGYRCC 2 cut(s) 1104, 1223
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 287, 538
BsiSI CCGG 2 cut(s) 87, 392
BslFI GGGAC 2 cut(s) 749, 841
BslI CCNNNNNNNGG 8 cut(s) 205, 217, 398, 543, 544, 935, 1215, 1234
BsmAI GTCTC 2 cut(s) 22, 1109
BsmBI CGTCTC 2 cut(s) 22, 1109
BsmFI GGGAC 2 cut(s) 749, 841
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 10, 446, 783
BsoBI CYCGRG 2 cut(s) 287, 538
Bsp1286I GDGCHC 3 cut(s) 417, 550, 1228
Bsp143I GATC 2 cut(s) 235, 817
Bsp1720I GCTNAGC 1 cut(s) 879
Bsp19I CCATGG 2 cut(s) 778, 1229
BspANI GGCC 3 cut(s) 10, 446, 783
BspCNI CTCAG 9 cut(s) 32, 47, 295, 304, 439, 463, 517, 562, 892
BspFNI CGCG 2 cut(s) 204, 1120
BspLI GGNNCC 3 cut(s) 1106, 1225, 1256
BspMI ACCTGC 1 cut(s) 345
BspT107I GGYRCC 2 cut(s) 1104, 1223
BsrBI CCGCTC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 1345
BssECI CCNNGG 2 cut(s) 778, 1229
BssMI GATC 2 cut(s) 235, 817
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 2 cut(s) 778, 1229
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 566, 902, 1410, 1429
Bst6I CTCTTC 2 cut(s) 1086, 1118
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 1236
BstDSI CCRYGG 2 cut(s) 778, 1229
BstF5I GGATG 3 cut(s) 162, 919, 946
BstFNI CGCG 2 cut(s) 204, 1120
BstH2I RGCGCY 2 cut(s) 199, 1071
BstHHI GCGC 2 cut(s) 198, 1070
BstKTI GATC 2 cut(s) 238, 820
BstMAI GTCTC 2 cut(s) 22, 1109
BstMBI GATC 2 cut(s) 235, 817
BstMWI GCNNNNNNNGC 7 cut(s) 96, 105, 248, 272, 554, 620, 1027
BstNI CCWGG 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 1302
BstSCI CCNGG 3 cut(s) 85, 390, 441
BstSLI GKGCMC 1 cut(s) 1228
BstUI CGCG 2 cut(s) 204, 1120
BstV1I GCAGC 3 cut(s) 235, 238, 1278
BstV2I GAAGAC 3 cut(s) 303, 629, 1406
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 3 cut(s) 10, 446, 783
BtgI CCRYGG 2 cut(s) 778, 1229
BtsCI GGATG 3 cut(s) 162, 919, 946
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 434, 1084
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 1236
CfoI GCGC 2 cut(s) 198, 1070
Cfr13I GGNCC 2 cut(s) 208, 445
CseI GACGC 2 cut(s) 317, 1126
Csp6I GTAC 1 cut(s) 1105
CviAII CATG 5 cut(s) 239, 304, 779, 1109, 1230
CviQI GTAC 1 cut(s) 1105
DpnI GATC 2 cut(s) 237, 819
DpnII GATC 2 cut(s) 235, 817
Eam1104I CTCTTC 2 cut(s) 1086, 1118
EarI CTCTTC 2 cut(s) 1086, 1118
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 778, 1229
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 1069
Eco81I CCTNAGG 1 cut(s) 375
Eco88I CYCGRG 2 cut(s) 287, 538
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 778, 1229
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 778, 1229
Esp3I CGTCTC 2 cut(s) 22, 1109
FaeI CATG 5 cut(s) 242, 307, 782, 1112, 1233
FaqI GGGAC 2 cut(s) 749, 841
FatI CATG 5 cut(s) 238, 303, 778, 1108, 1229
FauI CCCGC 1 cut(s) 277
FauNDI CATATG 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 7 cut(s) 106, 199, 202, 224, 227, 273, 1292
FokI GGATG 3 cut(s) 149, 926, 933
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 7 cut(s) 106, 199, 202, 224, 227, 273, 1292
FspBI CTAG 2 cut(s) 864, 1175
GlaI GCGC 2 cut(s) 197, 1069
GluI GCNGC 7 cut(s) 106, 199, 202, 224, 227, 273, 1292
GsaI CCCAGC 3 cut(s) 677, 863, 1034
GsuI CTGGAG 1 cut(s) 1273
HaeII RGCGCY 2 cut(s) 199, 1071
HaeIII GGCC 3 cut(s) 10, 446, 783
HapII CCGG 2 cut(s) 87, 392
HgaI GACGC 2 cut(s) 317, 1126
HhaI GCGC 2 cut(s) 198, 1070
Hin1II CATG 5 cut(s) 242, 307, 782, 1112, 1233
Hin6I GCGC 2 cut(s) 196, 1068
HinP1I GCGC 2 cut(s) 196, 1068
HincII GTYRAC 2 cut(s) 388, 423
HindII GTYRAC 2 cut(s) 388, 423
HinfI GANTC 7 cut(s) 278, 402, 424, 499, 845, 854, 1202
HpaII CCGG 2 cut(s) 87, 392
HphI GGTGA 7 cut(s) 16, 121, 340, 400, 808, 908, 1355
Hpy166II GTNNAC 3 cut(s) 388, 423, 1319
Hpy188I TCNGA 7 cut(s) 468, 552, 619, 841, 913, 955, 1185
Hpy188III TCNNGA 3 cut(s) 491, 503, 1252
Hpy8I GTNNAC 3 cut(s) 388, 423, 1319
Hpy99I CGWCG 3 cut(s) 332, 335, 1088
HpyAV CCTTC 5 cut(s) 142, 178, 253, 1262, 1340
HpyCH4III ACNGT 4 cut(s) 566, 902, 1410, 1429
HpyCH4IV ACGT 2 cut(s) 345, 704
HpyCH4V TGCA 7 cut(s) 44, 463, 557, 614, 623, 714, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 105, 248, 272, 554, 620, 1027
HpySE526I ACGT 2 cut(s) 345, 704
Hsp92II CATG 5 cut(s) 242, 307, 782, 1112, 1233
HspAI GCGC 2 cut(s) 196, 1068
KpnI GGTACC 1 cut(s) 1108
Kzo9I GATC 2 cut(s) 235, 817
LmnI GCTCC 6 cut(s) 120, 125, 220, 484, 601, 1254
Lsp1109I GCAGC 3 cut(s) 235, 238, 1278
LweI GCATC 3 cut(s) 472, 610, 623
MaeI CTAG 2 cut(s) 864, 1175
MaeII ACGT 2 cut(s) 345, 704
MaeIII GTNAC 5 cut(s) 346, 406, 896, 1079, 1423
MalI GATC 2 cut(s) 237, 819
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 235, 817
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 417, 550, 1228
MluCI AATT 6 cut(s) 39, 643, 756, 770, 823, 868
MlyI GAGTC 2 cut(s) 418, 863
MmeI TCCRAC 2 cut(s) 147, 891
Mph1103I ATGCAT 1 cut(s) 616
MseI TTAA 6 cut(s) 609, 642, 647, 759, 1377, 1432
MslI CAYNNNNRTG 2 cut(s) 609, 963
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 87, 392
MspR9I CCNGG 3 cut(s) 87, 392, 443
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 204, 1120
MwoI GCNNNNNNNGC 7 cut(s) 96, 105, 248, 272, 554, 620, 1027
NciI CCSGG 2 cut(s) 87, 392
NcoI CCATGG 2 cut(s) 778, 1229
NdeI CATATG 1 cut(s) 1054
NdeII GATC 2 cut(s) 235, 817
NlaIII CATG 5 cut(s) 242, 307, 782, 1112, 1233
NlaIV GGNNCC 3 cut(s) 1106, 1225, 1256
NmuCI GTSAC 4 cut(s) 346, 406, 896, 1079
NsiI ATGCAT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 5 cut(s) 278, 402, 499, 845, 1202
PkrI GCNGC 7 cut(s) 107, 200, 203, 225, 228, 274, 1293
PleI GAGTC 2 cut(s) 418, 862
PpsI GAGTC 2 cut(s) 418, 862
Ppu21I YACGTR 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1302
Psp6I CCWGG 1 cut(s) 441
PspFI CCCAGC 3 cut(s) 673, 859, 1030
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 1106, 1225, 1256
PspPI GGNCC 2 cut(s) 208, 445
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 1106
RsaNI GTAC 1 cut(s) 1105
RseI CAYNNNNRTG 2 cut(s) 609, 963
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 6 cut(s) 609, 642, 647, 759, 1377, 1432
SatI GCNGC 7 cut(s) 106, 199, 202, 224, 227, 273, 1292
Sau3AI GATC 2 cut(s) 235, 817
Sau96I GGNCC 2 cut(s) 208, 445
SchI GAGTC 2 cut(s) 418, 863
ScrFI CCNGG 3 cut(s) 87, 392, 443
SduI GDGCHC 3 cut(s) 417, 550, 1228
SfaNI GCATC 3 cut(s) 472, 610, 623
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 609, 963
SmlI CTYRAG 2 cut(s) 110, 1210
SmoI CTYRAG 2 cut(s) 110, 1210
Sse9I AATT 6 cut(s) 39, 643, 756, 770, 823, 868
SspMI CTAG 2 cut(s) 864, 1175
StyD4I CCNGG 3 cut(s) 85, 390, 441
StyI CCWWGG 2 cut(s) 778, 1229
TaaI ACNGT 4 cut(s) 566, 902, 1410, 1429
TaiI ACGT 2 cut(s) 348, 707
TaqI TCGA 5 cut(s) 171, 234, 387, 848, 1399
TaqII GACCGA 1 cut(s) 225
TasI AATT 6 cut(s) 39, 643, 756, 770, 823, 868
TauI GCSGC 4 cut(s) 108, 201, 204, 275
TfiI GAWTC 5 cut(s) 278, 402, 499, 845, 1202
Tru1I TTAA 6 cut(s) 609, 642, 647, 759, 1377, 1432
Tru9I TTAA 6 cut(s) 609, 642, 647, 759, 1377, 1432
TscAI CASTG 3 cut(s) 51, 434, 1084
TseFI GTSAC 4 cut(s) 346, 406, 896, 1079
TseI GCWGC 3 cut(s) 223, 226, 1291
Tsp45I GTSAC 4 cut(s) 346, 406, 896, 1079
TspDTI ATGAA 3 cut(s) 292, 765, 825
TspGWI ACGGA 2 cut(s) 4, 1022
TspRI CASTG 3 cut(s) 51, 434, 1084
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 770, 868
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 864, 1175
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.