Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Reverse (-)

140068 .. 142871

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTGAGGCCGTCCGTCTCAGTAATCATATACATAGCAATTGCAGTGCTTGTCCTCTTGCTCATTTCCCACTCCCCCAAGAAACCCGGCAACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACCTTCTCTCCTCCCCTCCACCACCACAACCCCATCCCCTTCGACCCTCTCGTTGCCGACATTGAGCGCCGCCGCGAGGACCGAAAGTGGGAGCAGCAGCACTTCGATCATGCCTTCAACGCCTCCCACCACTCCGCCCCCGCCGCCGAATCTCAGCCCGAGTGGGAAGACTTCATGGACGCTGAGGATTACTTGAACGACGACGAGAGGTTCAACGTCACCAGCAGGTTGCTCTTGTTGTTTCCTACGGTTGATGTCGACCCGGCTGATGGATTCGTCACCGAGCACGAGTTGACTCAGTGGAACTTGAACCAGGCCCAGAGGGAAGTCTTGCATCGGACTCAGAGGGATATGGAGCTTCACGACAAGAATCGTGACGGCTTTGTTTCCTTTGCCGAGTATCAGCCCCCGAGTTGGGCTCAGAATGCAGATAACAGTTCCTTTGGATATGATATGGGTTGGTGGAAAGAGGAACATTTTAATGCATCAGATGCAAATGGAGATGGTCTTCTTAATATAACCGAGTTCAATGACTTTCTACACCCAGCTGACAGCAAAAACCCAAAGCTACTTAAGTGGTTGTGCAAGGAGGAAGTAAGGGAAAGGGACACCGACAAAGATGAAAAGATTAACTTCAAAGAATTCTTCCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAAATCACAATTCCACACATCAGTCTGATGATTCGATGGAGTCCCCAGCTAGAAATTTGTTCGCTCAGCTTGACAAAGATGGTGACGGTTATTTGTCAGATGAGGAGATACTTCCTATTATTGGAAAGATACATCCATCAGAACATTACTATGCAAAACAACAAGCAGATTACATTATATCACAGGCTGATACGGATAAAGACGGGCGACTAACGCTGGGAGAGATGATAGAGAACCCATATGTATTTTACAGCGCTATTTTCAATGACGATGAGGAAGAGGACTATGGGTACCATGATGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

375

Amino Acids

43.84

Weight (kDa)

4.83

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
Acc65I	GGTACC	1 cut(s)	1104
AccB1I	GGYRCC	1 cut(s)	1104
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	204
AciI	CCGC	9 cut(s)	97, 103, 106, 118, 199, 202, 264, 270, 273
AcsI	RAATTY	2 cut(s)	770, 868
AfaI	GTAC	1 cut(s)	1106
AfeI	AGCGCT	1 cut(s)	1069
AfiI	CCNNNNNNNGG	6 cut(s)	205, 217, 398, 543, 544, 935
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	247, 325, 343, 439, 658, 766, 1078
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	115, 487, 677, 697, 863, 883
AluI	AGCT	6 cut(s)	115, 487, 677, 697, 863, 883
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	287, 538
Aor51HI	AGCGCT	1 cut(s)	1069
AoxI	GGCC	3 cut(s)	8, 444, 781
ApeKI	GCWGC	2 cut(s)	223, 226
ApoI	RAATTY	2 cut(s)	770, 868
Asp718I	GGTACC	1 cut(s)	1104
AspLEI	GCGC	2 cut(s)	198, 1070
AspS9I	GGNCC	2 cut(s)	208, 445
AsuC2I	CCSGG	2 cut(s)	87, 392
AsuHPI	GGTGA	6 cut(s)	16, 121, 340, 400, 808, 908
AvaI	CYCGRG	2 cut(s)	287, 538
AvaII	GGWCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	1104
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	303, 629
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	235, 238
BccI	CCATC	6 cut(s)	170, 392, 626, 844, 887, 958
BceAI	ACGGC	1 cut(s)	523
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	2 cut(s)	87, 392
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	864
BfoI	RGCGCY	2 cut(s)	199, 1071
BfrI	CTTAAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	6 cut(s)	106, 199, 202, 224, 227, 273
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	6 cut(s)	107, 200, 203, 225, 228, 274
Bme1390I	CCNGG	3 cut(s)	87, 392, 443
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	287, 538
BmgT120I	GGNCC	2 cut(s)	208, 445
BmiI	GGNNCC	1 cut(s)	1106
BmrFI	CCNGG	3 cut(s)	87, 392, 443
BmsI	GCATC	3 cut(s)	472, 610, 623
BpiI	GAAGAC	2 cut(s)	303, 629
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	87, 392
BsaJI	CCNNGG	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 217, 398, 543, 544, 935
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	2 cut(s)	162, 946
BseLI	CCNNNNNNNGG	6 cut(s)	205, 217, 398, 543, 544, 935
BseMII	CTCAG	7 cut(s)	33, 296, 303, 440, 485, 563, 893
BseRI	GAGGAG	2 cut(s)	129, 932
BseXI	GCAGC	2 cut(s)	235, 238
BseYI	CCCAGC	3 cut(s)	673, 859, 1030
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	10, 446, 783
BshNI	GGYRCC	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	287, 538
BsiSI	CCGG	2 cut(s)	87, 392
BslFI	GGGAC	2 cut(s)	749, 841
BslI	CCNNNNNNNGG	6 cut(s)	205, 217, 398, 543, 544, 935
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	749, 841
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	3 cut(s)	10, 446, 783
BsoBI	CYCGRG	2 cut(s)	287, 538
Bsp1286I	GDGCHC	2 cut(s)	417, 550
Bsp143I	GATC	1 cut(s)	235
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	9 cut(s)	97, 103, 106, 118, 199, 202, 264, 270, 273
BspANI	GGCC	3 cut(s)	10, 446, 783
BspCNI	CTCAG	7 cut(s)	32, 295, 304, 439, 484, 562, 892
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	1106
BspMI	ACCTGC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	1104
BspTI	CTTAAG	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	379, 566, 902
Bst6I	CTCTTC	1 cut(s)	1086
BstAFI	CTTAAG	1 cut(s)	701
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstDEI	CTNAG	7 cut(s)	19, 282, 312, 426, 471, 549, 879
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	162, 946
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	2 cut(s)	199, 1071
BstHHI	GCGC	2 cut(s)	198, 1070
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 248, 272, 554, 620, 1027
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	85, 390, 441
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	235, 238
BstV2I	GAAGAC	2 cut(s)	303, 629
BsuRI	GGCC	3 cut(s)	10, 446, 783
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	2 cut(s)	162, 946
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 434
BveI	ACCTGC	1 cut(s)	345
CfoI	GCGC	2 cut(s)	198, 1070
Cfr13I	GGNCC	2 cut(s)	208, 445
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	1105
CviAII	CATG	4 cut(s)	239, 304, 779, 1109
CviQI	GTAC	1 cut(s)	1105
DdeI	CTNAG	7 cut(s)	19, 282, 312, 426, 471, 549, 879
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
EciI	GGCGGA	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	1069
Eco88I	CYCGRG	2 cut(s)	287, 538
EcoRI	GAATTC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	4 cut(s)	242, 307, 782, 1112
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	2 cut(s)	749, 841
FatI	CATG	4 cut(s)	238, 303, 778, 1108
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	1054
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	106, 199, 202, 224, 227, 273
FokI	GGATG	2 cut(s)	149, 933
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	6 cut(s)	106, 199, 202, 224, 227, 273
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	2 cut(s)	197, 1069
GluI	GCNGC	6 cut(s)	106, 199, 202, 224, 227, 273
GsaI	CCCAGC	3 cut(s)	677, 863, 1034
HaeII	RGCGCY	2 cut(s)	199, 1071
HaeIII	GGCC	3 cut(s)	10, 446, 783
HapII	CCGG	2 cut(s)	87, 392
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	198, 1070
Hin1II	CATG	4 cut(s)	242, 307, 782, 1112
Hin6I	GCGC	2 cut(s)	196, 1068
HinP1I	GCGC	2 cut(s)	196, 1068
HincII	GTYRAC	2 cut(s)	388, 423
HindII	GTYRAC	2 cut(s)	388, 423
HinfI	GANTC	7 cut(s)	278, 402, 424, 469, 499, 845, 854
HpaII	CCGG	2 cut(s)	87, 392
HphI	GGTGA	6 cut(s)	16, 121, 340, 400, 808, 908
Hpy166II	GTNNAC	2 cut(s)	388, 423
Hpy188I	TCNGA	7 cut(s)	468, 474, 552, 619, 841, 913, 955
Hpy188III	TCNNGA	2 cut(s)	491, 503
Hpy8I	GTNNAC	2 cut(s)	388, 423
Hpy99I	CGWCG	2 cut(s)	332, 335
HpyAV	CCTTC	3 cut(s)	142, 178, 253
HpyCH4III	ACNGT	3 cut(s)	379, 566, 902
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	44, 463, 557, 614, 623, 714, 968
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 248, 272, 554, 620, 1027
HpyF3I	CTNAG	7 cut(s)	19, 282, 312, 426, 471, 549, 879
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	242, 307, 782, 1112
HspAI	GCGC	2 cut(s)	196, 1068
KpnI	GGTACC	1 cut(s)	1108
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	4 cut(s)	120, 125, 220, 484
Lsp1109I	GCAGC	2 cut(s)	235, 238
LweI	GCATC	3 cut(s)	472, 610, 623
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	4 cut(s)	346, 406, 503, 896
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	308, 629, 766, 824, 1103
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	417, 550
MluCI	AATT	4 cut(s)	39, 770, 823, 868
MlyI	GAGTC	3 cut(s)	418, 463, 863
MmeI	TCCRAC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	5 cut(s)	609, 642, 702, 759, 1123
MslI	CAYNNNNRTG	2 cut(s)	609, 963
MspA1I	CMGCKG	1 cut(s)	677
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	87, 392
MspR9I	CCNGG	3 cut(s)	87, 392, 443
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 248, 272, 554, 620, 1027
NciI	CCSGG	2 cut(s)	87, 392
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	1 cut(s)	1054
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	242, 307, 782, 1112
NlaIV	GGNNCC	1 cut(s)	1106
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	4 cut(s)	346, 406, 503, 896
NsiI	ATGCAT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	278, 402, 499, 845
PkrI	GCNGC	6 cut(s)	107, 200, 203, 225, 228, 274
PleI	GAGTC	3 cut(s)	418, 463, 862
PpsI	GAGTC	3 cut(s)	418, 463, 862
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	3 cut(s)	673, 859, 1030
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	1106
PspPI	GGNCC	2 cut(s)	208, 445
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	1106
RsaNI	GTAC	1 cut(s)	1105
RseI	CAYNNNNRTG	2 cut(s)	609, 963
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	5 cut(s)	609, 642, 702, 759, 1123
SatI	GCNGC	6 cut(s)	106, 199, 202, 224, 227, 273
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	208, 445
SchI	GAGTC	3 cut(s)	418, 463, 863
ScrFI	CCNGG	3 cut(s)	87, 392, 443
SduI	GDGCHC	2 cut(s)	417, 550
SfaNI	GCATC	3 cut(s)	472, 610, 623
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	609, 963
SmlI	CTYRAG	2 cut(s)	110, 701
SmoI	CTYRAG	2 cut(s)	110, 701
Sse9I	AATT	4 cut(s)	39, 770, 823, 868
SsiI	CCGC	9 cut(s)	97, 103, 106, 118, 199, 202, 264, 270, 273
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	3 cut(s)	85, 390, 441
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	3 cut(s)	379, 566, 902
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	171, 234, 387, 848
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	4 cut(s)	39, 770, 823, 868
TauI	GCSGC	4 cut(s)	108, 201, 204, 275
TfiI	GAWTC	4 cut(s)	278, 402, 499, 845
Tru1I	TTAA	5 cut(s)	609, 642, 702, 759, 1123
Tru9I	TTAA	5 cut(s)	609, 642, 702, 759, 1123
TscAI	CASTG	2 cut(s)	51, 434
TseFI	GTSAC	4 cut(s)	346, 406, 503, 896
TseI	GCWGC	2 cut(s)	223, 226
Tsp45I	GTSAC	4 cut(s)	346, 406, 503, 896
TspDTI	ATGAA	3 cut(s)	292, 765, 825
TspGWI	ACGGA	3 cut(s)	4, 1022, 1109
TspRI	CASTG	2 cut(s)	51, 434
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	770, 868
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.