Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Reverse (-)

276886 .. 279630

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGGAGGGCGTCGGTATTGACATACATCACCATAGCACTCCTGGTGTTGCTGCTCATCTCCTGGTCCCCCAAGAAACCCGCCAACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCAGTTTCGCTCCTCCCCTCCACCATTCTCACAATCCCATCCCCTTCGACCCTCTCGTCGCCGACATCGAGCGCCGCCGCGAGGACCGCAAGTGGGAGAAGGAGCACCTCGATTTGGATTTGGATCACCACGACTCCTCCGCCCCCGCCGCCGAGTCCCAGCCCGAGTGGGAGGATTTCATGGACGCCGAGGACTACCTGAATGACGAGGACAAGTTCAATGTCACCAACAGGCTCGTCTTGTTGTTCCCCAAGGTTGATGTGGACCCCGTCGATGGCTTTATCACCGAGCACGAGCTCACTCTCTGGAACCTGAAGCAGGCTCAGAGGGAAGTTTTGCATAGGACTCAGAGGGATATGGAGCTTCATGATAAGAATCGTGACGGCTTTGTTTCCTTTCAAGAGTACCAACCCCCTAGCTGGGTTCAGAATGCAGATAACAACTCATTTGGCTATGATATGGGCTGGTGGAAAGAAGAGCATTTTAATGCCTCAGATGCAGATGGAGATGGTCTTCTCAATCTAACTGAGTTCAATGACTTCCTGCACCCGGCCGACAGCAAAAACCCAAAGCTACTTCACTGGTTGTGCAAGGAGGAAGTAAGAGAGAGGGATACAGACAAAGATGGAAAGATTAACTTCAAAGAATTTTTCCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAGATCACAATTCCACACATCAGTCTGATGATTTGATGGAGGCCCCGGCTAAAACTTTGTTTGCACAGCTTGACAAAGATGGTGACGGATACTTGTCAGATGTTGAGTTACTTCCCATTATTGGAAAAATACATCCATCAGAACATTACTACGCGAAACAACAATCAGATTACATCATATCACAGGCAGATACAAATAAAGATGGGGGCTTGTCACTGAGCGAGATGATTGAGAACCCATATGTATTTTACAGCGCTATTTTCAATGATGATGATGAAGAGGACTATGGGTTCCATGATGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

374

Amino Acids

43.68

Weight (kDa)

4.74

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	200 - 259	4e-06	EF-hand domain pair
EF-hand_7	PF13499	287 - 348	8.1e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	2 cut(s)	201, 965
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	767
AcuI	CTGAAG	2 cut(s)	106, 455
AcyI	GRCGYC	2 cut(s)	11, 306
AfaI	GTAC	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	1066
AfiI	CCNNNNNNNGG	9 cut(s)	202, 214, 235, 395, 439, 540, 541, 670, 932
AgsI	TTSAA	5 cut(s)	340, 521, 655, 763, 1075
AjnI	CCWGG	2 cut(s)	42, 62
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AloI	GAACNNNNNNTCC	2 cut(s)	1085, 1117
AluBI	AGCT	6 cut(s)	109, 418, 484, 540, 694, 880
AluI	AGCT	6 cut(s)	109, 418, 484, 540, 694, 880
Alw21I	GWGCWC	3 cut(s)	228, 414, 420
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	284
Aor51HI	AGCGCT	1 cut(s)	1066
AoxI	GGCC	3 cut(s)	672, 778, 852
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	767
AspLEI	GCGC	2 cut(s)	195, 1067
AspS9I	GGNCC	4 cut(s)	66, 205, 385, 853
AsuC2I	CCSGG	2 cut(s)	671, 857
AsuHPI	GGTGA	6 cut(s)	22, 239, 337, 397, 805, 905
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	66, 205, 385
BanII	GRGCYC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	3 cut(s)	228, 414, 420
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	9 cut(s)	167, 389, 617, 623, 740, 841, 884, 955, 1007
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	44, 64
BciVI	GTATCC	2 cut(s)	727, 893
BcnI	CCSGG	2 cut(s)	671, 857
BfaI	CTAG	1 cut(s)	537
BfoI	RGCGCY	2 cut(s)	196, 1068
BfuI	GTATCC	2 cut(s)	727, 893
BisI	GCNGC	5 cut(s)	53, 100, 196, 199, 270
BlsI	GCNGC	5 cut(s)	54, 101, 197, 200, 271
Bme1390I	CCNGG	4 cut(s)	44, 64, 671, 857
Bme18I	GGWCC	3 cut(s)	66, 205, 385
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	4 cut(s)	66, 205, 385, 853
BmiI	GGNNCC	5 cut(s)	68, 387, 431, 855, 1103
BmrFI	CCNGG	4 cut(s)	44, 64, 671, 857
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	671, 857
BsaBI	GATNNNNATC	2 cut(s)	243, 495
BsaHI	GRCGYC	2 cut(s)	11, 306
BsaJI	CCNNGG	4 cut(s)	309, 372, 775, 855
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 242, 269, 272
Bsc4I	CCNNNNNNNGG	9 cut(s)	202, 214, 235, 395, 439, 540, 541, 670, 932
Bse1I	ACTGG	1 cut(s)	707
Bse8I	GATNNNNATC	2 cut(s)	243, 495
BseBI	CCWGG	2 cut(s)	44, 64
BseDI	CCNNGG	4 cut(s)	309, 372, 775, 855
BseGI	GGATG	2 cut(s)	159, 943
BseJI	GATNNNNATC	2 cut(s)	243, 495
BseLI	CCNNNNNNNGG	9 cut(s)	202, 214, 235, 395, 439, 540, 541, 670, 932
BseMII	CTCAG	5 cut(s)	458, 482, 627, 639, 1019
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	2 cut(s)	123, 247
BseX3I	CGGCCG	1 cut(s)	672
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	2 cut(s)	279, 540
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	201, 965
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	674, 780, 854
BsiEI	CGRYCG	1 cut(s)	675
BsiHKAI	GWGCWC	3 cut(s)	228, 414, 420
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	671, 857
BslFI	GGGAC	2 cut(s)	52, 262
BslI	CCNNNNNNNGG	9 cut(s)	202, 214, 235, 395, 439, 540, 541, 670, 932
BsmFI	GGGAC	2 cut(s)	52, 262
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	674, 780, 854
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	228, 414, 420
Bsp143I	GATC	2 cut(s)	244, 814
Bsp19I	CCATGG	1 cut(s)	775
BspANI	GGCC	3 cut(s)	674, 780, 854
BspCNI	CTCAG	5 cut(s)	457, 481, 626, 640, 1020
BspFNI	CGCG	2 cut(s)	201, 965
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	5 cut(s)	68, 387, 431, 855, 1103
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	591
BsrBI	CCGCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	4 cut(s)	309, 372, 775, 855
BssMI	GATC	2 cut(s)	244, 814
BssNI	GRCGYC	2 cut(s)	11, 306
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	372, 775
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	44, 64
Bst6I	CTCTTC	2 cut(s)	591, 1083
BstACI	GRCGYC	2 cut(s)	11, 306
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	5 cut(s)	444, 468, 613, 648, 1028
BstDSI	CCRYGG	1 cut(s)	775
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	159, 943
BstFNI	CGCG	2 cut(s)	201, 965
BstH2I	RGCGCY	2 cut(s)	196, 1068
BstHHI	GCGC	2 cut(s)	195, 1067
BstKTI	GATC	2 cut(s)	247, 817
BstMBI	GATC	2 cut(s)	244, 814
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 207, 269, 617
BstNI	CCWGG	2 cut(s)	44, 64
BstSCI	CCNGG	4 cut(s)	42, 62, 669, 855
BstUI	CGCG	2 cut(s)	201, 965
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	626
BstZI	CGGCCG	1 cut(s)	672
BsuI	GTATCC	2 cut(s)	727, 893
BsuRI	GGCC	3 cut(s)	674, 780, 854
BtgI	CCRYGG	1 cut(s)	775
BtsCI	GGATG	2 cut(s)	159, 943
BtsIMutI	CAGTG	2 cut(s)	700, 1025
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	195, 1067
Cfr13I	GGNCC	4 cut(s)	66, 205, 385, 853
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	4 cut(s)	301, 488, 776, 1106
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	5 cut(s)	444, 468, 613, 648, 1028
DpnI	GATC	2 cut(s)	246, 816
DpnII	GATC	2 cut(s)	244, 814
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	672
EagI	CGGCCG	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	591, 1083
EarI	CTCTTC	2 cut(s)	591, 1083
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	418
EclXI	CGGCCG	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	372, 775
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	3 cut(s)	66, 205, 385
Eco47III	AGCGCT	1 cut(s)	1066
Eco52I	CGGCCG	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	106, 455
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	2 cut(s)	42, 62
EcoT14I	CCWWGG	2 cut(s)	372, 775
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	372, 775
FaeI	CATG	4 cut(s)	304, 491, 779, 1109
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	2 cut(s)	52, 262
FatI	CATG	4 cut(s)	300, 487, 775, 1105
FauI	CCCGC	2 cut(s)	88, 274
FauNDI	CATATG	1 cut(s)	1051
Fnu4HI	GCNGC	5 cut(s)	53, 100, 196, 199, 270
FokI	GGATG	2 cut(s)	146, 930
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	5 cut(s)	53, 100, 196, 199, 270
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	2 cut(s)	194, 1066
GluI	GCNGC	5 cut(s)	53, 100, 196, 199, 270
GsaI	CCCAGC	2 cut(s)	283, 544
HaeII	RGCGCY	2 cut(s)	196, 1068
HaeIII	GGCC	3 cut(s)	674, 780, 854
HapII	CCGG	2 cut(s)	671, 857
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	2 cut(s)	195, 1067
Hin1I	GRCGYC	2 cut(s)	11, 306
Hin1II	CATG	4 cut(s)	304, 491, 779, 1109
Hin6I	GCGC	2 cut(s)	193, 1065
HinP1I	GCGC	2 cut(s)	193, 1065
HinfI	GANTC	4 cut(s)	254, 275, 466, 496
HpaII	CCGG	2 cut(s)	671, 857
HphI	GGTGA	6 cut(s)	22, 239, 337, 397, 805, 905
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	8 cut(s)	447, 471, 549, 616, 838, 910, 952, 979
Hpy188III	TCNNGA	4 cut(s)	427, 488, 500, 521
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	3 cut(s)	16, 182, 395
HpyAV	CCTTC	2 cut(s)	175, 214
HpyCH4V	TGCA	6 cut(s)	460, 554, 620, 667, 711, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 207, 269, 617
HpyF3I	CTNAG	5 cut(s)	444, 468, 613, 648, 1028
Hsp92I	GRCGYC	2 cut(s)	11, 306
Hsp92II	CATG	4 cut(s)	304, 491, 779, 1109
HspAI	GCGC	2 cut(s)	193, 1065
Kzo9I	GATC	2 cut(s)	244, 814
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	5 cut(s)	114, 119, 136, 223, 481
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	5 cut(s)	343, 500, 893, 918, 1023
MalI	GATC	2 cut(s)	246, 816
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	2 cut(s)	244, 814
MboII	GAAGA	5 cut(s)	608, 626, 821, 824, 1100
MhlI	GDGCHC	3 cut(s)	228, 414, 420
MluCI	AATT	2 cut(s)	767, 820
MlyI	GAGTC	3 cut(s)	248, 284, 460
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	3 cut(s)	606, 756, 1120
MslI	CAYNNNNRTG	1 cut(s)	606
MspI	CCGG	2 cut(s)	671, 857
MspR9I	CCNGG	4 cut(s)	44, 64, 671, 857
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	44, 64
MvnI	CGCG	2 cut(s)	201, 965
MwoI	GCNNNNNNNGC	4 cut(s)	99, 207, 269, 617
NciI	CCSGG	2 cut(s)	671, 857
NcoI	CCATGG	1 cut(s)	775
NdeI	CATATG	1 cut(s)	1051
NdeII	GATC	2 cut(s)	244, 814
NlaIII	CATG	4 cut(s)	304, 491, 779, 1109
NlaIV	GGNNCC	5 cut(s)	68, 387, 431, 855, 1103
NmeAIII	GCCGAG	2 cut(s)	298, 334
NmuCI	GTSAC	4 cut(s)	343, 500, 893, 1023
PagI	TCATGA	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 186
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	496
PflFI	GACNNNGTC	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	54, 101, 197, 200, 271
PleI	GAGTC	3 cut(s)	248, 283, 460
PpsI	GAGTC	3 cut(s)	248, 283, 460
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	42, 62
PspFI	CCCAGC	2 cut(s)	279, 540
PspGI	CCWGG	2 cut(s)	42, 62
PspN4I	GGNNCC	5 cut(s)	68, 387, 431, 855, 1103
PspPI	GGNCC	4 cut(s)	66, 205, 385, 853
PsyI	GACNNNGTC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	606
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	606, 756, 1120
SatI	GCNGC	5 cut(s)	53, 100, 196, 199, 270
Sau3AI	GATC	2 cut(s)	244, 814
Sau96I	GGNCC	4 cut(s)	66, 205, 385, 853
SchI	GAGTC	3 cut(s)	248, 284, 460
ScrFI	CCNGG	4 cut(s)	44, 64, 671, 857
SduI	GDGCHC	3 cut(s)	228, 414, 420
SfaNI	GCATC	1 cut(s)	607
SinI	GGWCC	3 cut(s)	66, 205, 385
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	767, 820
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	42, 62, 669, 855
StyI	CCWWGG	2 cut(s)	372, 775
TaqI	TCGA	4 cut(s)	168, 189, 231, 393
TasI	AATT	2 cut(s)	767, 820
TauI	GCSGC	4 cut(s)	102, 198, 201, 272
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	606, 756, 1120
Tru9I	TTAA	3 cut(s)	606, 756, 1120
TscAI	CASTG	2 cut(s)	707, 1032
TseFI	GTSAC	4 cut(s)	343, 500, 893, 1023
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	4 cut(s)	343, 500, 893, 1023
TspDTI	ATGAA	4 cut(s)	289, 476, 822, 1101
TspGWI	ACGGA	2 cut(s)	912, 1106
TspRI	CASTG	2 cut(s)	707, 1032
Tth111I	GACNNNGTC	1 cut(s)	389
VpaK11BI	GGWCC	3 cut(s)	66, 205, 385
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 379
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.