Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Forward (+)

69477610 .. 69480771

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG464700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGGAGGGCGTCGGTATTGATATACATCACCATAGCACTCCTGGTGTTGCTGCTCATCTCCTGGTCCCCCAAGAAACCCGCCAACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACCTTCGCTCCTCCCCTCCACCATTCTCACAATCCCATCCCCTTCGACCCTCTCGTCGCCGACATCGAGCGCCGCCGCGAGGACCGCAAGTGGGAGAAGCAGCACCTCGACCTCGATTTGGATCACCACGACTCCGCCCCCGCCGCCGAGTCCCAGCCCGAGTGGGAGGATTTCATGGACGCCGAGGACTACCTGAATGACGAGGACAAGTTCAATGTCACCAACAGGCTGGTCTTGTTGTTCCCCAAGGTTGATGTCGACCCCGTCGATGGCTTTATCACCGAGCACGAGCTGACTCTCTGGAACCTCAAGCAGGCTCAGAGGGAAGTTTTGCATAGGACTCAGAGGGATATGGAGCTTCATGATAAGAATCGTGACGGCTTTGTTTCCTTTCAAGACTACCAACCCCCTAGCTGGGTTCAGAATGCAGATAACAACTCATTTGGCTATGATATGGGCTGGTGGAAAGAAGAGCATTTTAATGCATCAGATGCAGATGGAGATGGTCTTCTCAATCTAACTGAGTTCAATGACTTCCTGCACCCCGCTGACAGCAAAAACCCAAAGCTACTTCAGTGGTTGTGCAAGGAGGAAGTAAGAGAGAGGGATACAGACAAAGATGGAAAGATTAACTTCAAAGAATTTTTCCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAGATCACAATTCCACACATCAGTCTGATGATTTGATGGAGGCCCCGGCTAAAACTTTGTTTGCACAGCTTGACAAAGATGGTGACGGATACTTGTCAGATGTTGAGTTACTTCCCATTATTGGAAAAATACATCCATCAGAACATTACTATGCAAAACAACAAGCAGATTACATCATATCACAGGCAGATACAAATAAAGATGGGGGCTTGTCACTGAGCGAGATGATTGAGAACCCATATGTATTTTACAGCGCTATTTTCAATGATGAAGATGAAGAGGACTATGGGTTCCATGATGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

372

Amino Acids

43.59

Weight (kDa)

4.73

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	199 - 258	3e-06	EF-hand domain pair
EF-hand_7	PF13499	286 - 347	2e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	2 cut(s)	11, 303
AfeI	AGCGCT	1 cut(s)	1063
AfiI	CCNNNNNNNGG	8 cut(s)	202, 214, 241, 392, 436, 537, 538, 929
AgsI	TTSAA	5 cut(s)	337, 518, 652, 760, 1072
AjnI	CCWGG	2 cut(s)	42, 62
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AloI	GAACNNNNNNTCC	2 cut(s)	1082, 1114
AluBI	AGCT	6 cut(s)	109, 415, 481, 537, 691, 877
AluI	AGCT	6 cut(s)	109, 415, 481, 537, 691, 877
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	281
Aor51HI	AGCGCT	1 cut(s)	1063
AoxI	GGCC	2 cut(s)	775, 849
ApeKI	GCWGC	2 cut(s)	52, 223
ApoI	RAATTY	1 cut(s)	764
AspLEI	GCGC	2 cut(s)	195, 1064
AspS9I	GGNCC	3 cut(s)	66, 205, 850
AsuC2I	CCSGG	1 cut(s)	854
AsuHPI	GGTGA	7 cut(s)	22, 115, 239, 334, 394, 802, 902
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	66, 205
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	39, 235
BccI	CCATC	9 cut(s)	167, 386, 614, 620, 737, 838, 881, 952, 1004
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	2 cut(s)	44, 64
BciVI	GTATCC	2 cut(s)	724, 890
BcnI	CCSGG	1 cut(s)	854
BfaI	CTAG	1 cut(s)	534
BfoI	RGCGCY	2 cut(s)	196, 1065
BfuI	GTATCC	2 cut(s)	724, 890
BisI	GCNGC	6 cut(s)	53, 100, 196, 199, 224, 267
BlsI	GCNGC	6 cut(s)	54, 101, 197, 200, 225, 268
Bme1390I	CCNGG	3 cut(s)	44, 64, 854
Bme18I	GGWCC	2 cut(s)	66, 205
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	3 cut(s)	66, 205, 850
BmiI	GGNNCC	4 cut(s)	68, 428, 852, 1100
BmrFI	CCNGG	3 cut(s)	44, 64, 854
BmsI	GCATC	2 cut(s)	604, 617
BpiI	GAAGAC	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	89, 416
BpuMI	CCSGG	1 cut(s)	854
BsaBI	GATNNNNATC	3 cut(s)	26, 243, 492
BsaHI	GRCGYC	2 cut(s)	11, 303
BsaJI	CCNNGG	4 cut(s)	306, 369, 772, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 239, 269
Bsc4I	CCNNNNNNNGG	8 cut(s)	202, 214, 241, 392, 436, 537, 538, 929
Bse8I	GATNNNNATC	3 cut(s)	26, 243, 492
BseBI	CCWGG	2 cut(s)	44, 64
BseDI	CCNNGG	4 cut(s)	306, 369, 772, 852
BseGI	GGATG	2 cut(s)	159, 940
BseJI	GATNNNNATC	3 cut(s)	26, 243, 492
BseLI	CCNNNNNNNGG	8 cut(s)	202, 214, 241, 392, 436, 537, 538, 929
BseMII	CTCAG	4 cut(s)	455, 479, 636, 1016
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	39, 235
BseYI	CCCAGC	2 cut(s)	276, 537
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	777, 851
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	2 cut(s)	52, 259
BslI	CCNNNNNNNGG	8 cut(s)	202, 214, 241, 392, 436, 537, 538, 929
BsmFI	GGGAC	2 cut(s)	52, 259
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	777, 851
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	244, 811
Bsp19I	CCATGG	1 cut(s)	772
BspANI	GGCC	2 cut(s)	777, 851
BspCNI	CTCAG	4 cut(s)	454, 478, 637, 1017
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	4 cut(s)	68, 428, 852, 1100
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	588
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	4 cut(s)	306, 369, 772, 852
BssMI	GATC	2 cut(s)	244, 811
BssNI	GRCGYC	2 cut(s)	11, 303
BssSI	CACGAG	1 cut(s)	410
BssT1I	CCWWGG	2 cut(s)	369, 772
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	44, 64
Bst6I	CTCTTC	2 cut(s)	588, 1080
BstACI	GRCGYC	2 cut(s)	11, 303
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	441, 465, 645, 1025
BstDSI	CCRYGG	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	159, 940
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	2 cut(s)	196, 1065
BstHHI	GCGC	2 cut(s)	195, 1064
BstKTI	GATC	2 cut(s)	247, 814
BstMBI	GATC	2 cut(s)	244, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 207, 266, 614
BstNI	CCWGG	2 cut(s)	44, 64
BstSCI	CCNGG	3 cut(s)	42, 62, 852
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	39, 235
BstV2I	GAAGAC	1 cut(s)	623
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuI	GTATCC	2 cut(s)	724, 890
BsuRI	GGCC	2 cut(s)	777, 851
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	159, 940
BtsIMutI	CAGTG	2 cut(s)	704, 1022
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	2 cut(s)	195, 1064
Cfr13I	GGNCC	3 cut(s)	66, 205, 850
CseI	GACGC	1 cut(s)	311
CviAII	CATG	4 cut(s)	298, 485, 773, 1103
DdeI	CTNAG	4 cut(s)	441, 465, 645, 1025
DpnI	GATC	2 cut(s)	246, 813
DpnII	GATC	2 cut(s)	244, 811
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	588, 1080
EarI	CTCTTC	2 cut(s)	588, 1080
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	369, 772
Eco47I	GGWCC	2 cut(s)	66, 205
Eco47III	AGCGCT	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	42, 62
EcoT14I	CCWWGG	2 cut(s)	369, 772
EcoT22I	ATGCAT	1 cut(s)	610
ErhI	CCWWGG	2 cut(s)	369, 772
FaeI	CATG	4 cut(s)	301, 488, 776, 1106
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	2 cut(s)	52, 259
FatI	CATG	4 cut(s)	297, 484, 772, 1102
FauI	CCCGC	3 cut(s)	88, 271, 676
FauNDI	CATATG	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	53, 100, 196, 199, 224, 267
FokI	GGATG	2 cut(s)	146, 927
Fsp4HI	GCNGC	6 cut(s)	53, 100, 196, 199, 224, 267
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	2 cut(s)	194, 1063
GluI	GCNGC	6 cut(s)	53, 100, 196, 199, 224, 267
GsaI	CCCAGC	2 cut(s)	280, 541
HaeII	RGCGCY	2 cut(s)	196, 1065
HaeIII	GGCC	2 cut(s)	777, 851
HapII	CCGG	1 cut(s)	854
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	195, 1064
Hin1I	GRCGYC	2 cut(s)	11, 303
Hin1II	CATG	4 cut(s)	301, 488, 776, 1106
Hin6I	GCGC	2 cut(s)	193, 1062
HinP1I	GCGC	2 cut(s)	193, 1062
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	5 cut(s)	254, 272, 418, 463, 493
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	7 cut(s)	22, 115, 239, 334, 394, 802, 902
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	7 cut(s)	444, 468, 546, 613, 835, 907, 949
Hpy188III	TCNNGA	4 cut(s)	424, 485, 497, 518
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	3 cut(s)	16, 182, 392
HpyAV	CCTTC	2 cut(s)	136, 175
HpyCH4V	TGCA	8 cut(s)	457, 551, 608, 617, 664, 708, 872, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 207, 266, 614
HpyF3I	CTNAG	4 cut(s)	441, 465, 645, 1025
Hsp92I	GRCGYC	2 cut(s)	11, 303
Hsp92II	CATG	4 cut(s)	301, 488, 776, 1106
HspAI	GCGC	2 cut(s)	193, 1062
Kzo9I	GATC	2 cut(s)	244, 811
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	4 cut(s)	114, 119, 136, 478
Lsp1109I	GCAGC	2 cut(s)	39, 235
LweI	GCATC	2 cut(s)	604, 617
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	5 cut(s)	340, 497, 890, 915, 1020
MalI	GATC	2 cut(s)	246, 813
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	2 cut(s)	244, 811
MboII	GAAGA	6 cut(s)	605, 623, 818, 821, 1091, 1097
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	2 cut(s)	764, 817
MlyI	GAGTC	4 cut(s)	248, 281, 412, 457
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	610
MseI	TTAA	3 cut(s)	603, 753, 1117
MslI	CAYNNNNRTG	2 cut(s)	603, 957
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	3 cut(s)	44, 64, 854
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	44, 64
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	99, 207, 266, 614
NciI	CCSGG	1 cut(s)	854
NcoI	CCATGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	1048
NdeII	GATC	2 cut(s)	244, 811
NlaIII	CATG	4 cut(s)	301, 488, 776, 1106
NlaIV	GGNNCC	4 cut(s)	68, 428, 852, 1100
NmeAIII	GCCGAG	2 cut(s)	295, 331
NmuCI	GTSAC	4 cut(s)	340, 497, 890, 1020
NsiI	ATGCAT	1 cut(s)	610
PagI	TCATGA	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 186, 387
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	493
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	6 cut(s)	54, 101, 197, 200, 225, 268
PleI	GAGTC	4 cut(s)	248, 280, 412, 457
PpsI	GAGTC	4 cut(s)	248, 280, 412, 457
Psp6I	CCWGG	2 cut(s)	42, 62
PspFI	CCCAGC	2 cut(s)	276, 537
PspGI	CCWGG	2 cut(s)	42, 62
PspN4I	GGNNCC	4 cut(s)	68, 428, 852, 1100
PspPI	GGNCC	3 cut(s)	66, 205, 850
PsyI	GACNNNGTC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	603, 957
SalI	GTCGAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	603, 753, 1117
SatI	GCNGC	6 cut(s)	53, 100, 196, 199, 224, 267
Sau3AI	GATC	2 cut(s)	244, 811
Sau96I	GGNCC	3 cut(s)	66, 205, 850
SchI	GAGTC	4 cut(s)	248, 281, 412, 457
ScrFI	CCNGG	3 cut(s)	44, 64, 854
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	604, 617
SinI	GGWCC	2 cut(s)	66, 205
SmiMI	CAYNNNNRTG	2 cut(s)	603, 957
SmlI	CTYRAG	2 cut(s)	104, 431
SmoI	CTYRAG	2 cut(s)	104, 431
Sse9I	AATT	2 cut(s)	764, 817
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	3 cut(s)	42, 62, 852
StyI	CCWWGG	2 cut(s)	369, 772
TaqI	TCGA	6 cut(s)	168, 189, 231, 237, 381, 390
TasI	AATT	2 cut(s)	764, 817
TauI	GCSGC	4 cut(s)	102, 198, 201, 269
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	3 cut(s)	603, 753, 1117
Tru9I	TTAA	3 cut(s)	603, 753, 1117
TscAI	CASTG	2 cut(s)	704, 1029
TseFI	GTSAC	4 cut(s)	340, 497, 890, 1020
TseI	GCWGC	2 cut(s)	52, 223
Tsp45I	GTSAC	4 cut(s)	340, 497, 890, 1020
TspDTI	ATGAA	5 cut(s)	286, 473, 819, 1092, 1098
TspGWI	ACGGA	2 cut(s)	909, 1103
TspRI	CASTG	2 cut(s)	704, 1029
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	66, 205
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.