Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Forward (+)

32612697 .. 32616479

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGAGGGCGTCAGTATCAGTAATCATTTACATAACAATAGCAGTCCTAATCCTATTGCTTATCTCCCACTCCCCCAAAAAAGGCGGCAGCCAACGTCACCGGCGGCTGAAGCTGCGGTCCAACTTCACCTTCGCTCCTCCGCTGCACCACCACAACCCCATCCCCTTCGACCCTCTCGTCGCCGATATCGAGCGCCGCCTCGAGGACCGCAAGTGGGAGCAGCAGCACTTCGATCTCAACGACTCCGCCCCCGCCGCCGAGTCTCAGCCCGAGTGGGAAGACTTCATGAATGCGGAGGACTACTTGAACGACGAAGAGAGGTTCAACGTCACCAACAGATTGCTCTTGTTGTTTCCCAAGGTTGATGTCGACCCCGCTGATGGCTTCATCACTGAGGACGAGTTGACTCAGTGGAATTTGAAGCAGGCTCAGAAGGAAGTACTGCATCGCACTCAAAGGGATATGGAGCTTCATGACAAGAACCGTGACGGTTTTGTTTCCTTTGCCGAGTATCAGCCCCCAAGTTGGGTGCAGAATGCAGATAACAATTCGTTTGGCTATGATATGGGTTGGTGGAAAGAGGAGCATTTCAATGCATCAGATGCAGATGGAGATGGTCTTCTTAATATAACTGAGTTCAATGACTTTCTACATCCAGCTGACAGCAAAAACCCAAAGCTACTTCAGTGGTTGTGCAAGGAGGAAGTAAGGGAAAGGGATACAGACAAAGATGAAAAGATCAACTTCAAAGAATTCTTTCATGGCCTCTTTGATTTGGTGAGAAACTATGAAGAAGAAAATCACAATTCCTCACATCAGTTTGATGATTCGATGGAGGCCCCTGCTAGAAATTTGTTTGCTCAGCTTGACAAAGATGGTGACGGATATTTGTCAGATGCAGAGTTACTTCCTATTATTGGAAAGATACATCCATCAGAACATTACTATGCAAAACAACAAGCAGATTACATCATATCACAGGCAGATACAGATAAAGATGGGCGTCTAACGCTGACAGAAATGATTGAGAACCCTTATGTATTTTACAGCGCTATTTTCAACGACGATGAAGAAGAGGACTATGAGTTCCATGATGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

370

Amino Acids

43.32

Weight (kDa)

4.65

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AbsI	CCTCGAGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	418, 755, 853
AcuI	CTGAAG	2 cut(s)	131, 671
AcyI	GRCGYC	2 cut(s)	11, 1006
AfaI	GTAC	1 cut(s)	444
AfeI	AGCGCT	1 cut(s)	1054
AfiI	CCNNNNNNNGG	7 cut(s)	83, 205, 217, 383, 528, 529, 920
AgsI	TTSAA	7 cut(s)	310, 328, 424, 595, 643, 751, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AloI	GAACNNNNNNTCC	2 cut(s)	1073, 1105
AluBI	AGCT	5 cut(s)	115, 472, 662, 682, 868
AluI	AGCT	5 cut(s)	115, 472, 662, 682, 868
Alw26I	GTCTC	1 cut(s)	270
Ama87I	CYCGRG	2 cut(s)	203, 272
Aor51HI	AGCGCT	1 cut(s)	1054
AoxI	GGCC	2 cut(s)	766, 840
ApeKI	GCWGC	5 cut(s)	90, 115, 145, 223, 226
ApoI	RAATTY	3 cut(s)	418, 755, 853
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	2 cut(s)	198, 1055
AspS9I	GGNCC	3 cut(s)	120, 208, 841
AsuHPI	GGTGA	5 cut(s)	92, 121, 325, 793, 893
AvaI	CYCGRG	2 cut(s)	203, 272
AvaII	GGWCC	2 cut(s)	120, 208
BbsI	GAAGAC	2 cut(s)	288, 614
BbvI	GCAGC	5 cut(s)	102, 102, 132, 235, 238
BccI	CCATC	8 cut(s)	170, 377, 605, 611, 829, 872, 943, 995
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	849
BfoI	RGCGCY	2 cut(s)	199, 1056
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	9 cut(s)	88, 91, 107, 116, 146, 199, 224, 227, 258
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	9 cut(s)	89, 92, 108, 117, 147, 200, 225, 228, 259
BmcAI	AGTACT	1 cut(s)	444
Bme18I	GGWCC	2 cut(s)	120, 208
BmeT110I	CYCGRG	2 cut(s)	203, 272
BmgT120I	GGNCC	3 cut(s)	120, 208, 841
BmiI	GGNNCC	1 cut(s)	843
BmsI	GCATC	4 cut(s)	457, 595, 608, 889
BpiI	GAAGAC	2 cut(s)	288, 614
Bpu1102I	GCTNAGC	1 cut(s)	864
BsaHI	GRCGYC	2 cut(s)	11, 1006
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 205, 217, 383, 528, 529, 920
Bse118I	RCCGGY	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	162, 655, 931
BseLI	CCNNNNNNNGG	7 cut(s)	83, 205, 217, 383, 528, 529, 920
BseMII	CTCAG	6 cut(s)	281, 387, 425, 446, 627, 878
BseRI	GAGGAG	2 cut(s)	129, 599
BseXI	GCAGC	5 cut(s)	102, 102, 132, 235, 238
BsgI	GTGCAG	2 cut(s)	131, 554
BshFI	GGCC	2 cut(s)	768, 842
BsiHKCI	CYCGRG	2 cut(s)	203, 272
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	7 cut(s)	83, 205, 217, 383, 528, 529, 920
BsmAI	GTCTC	1 cut(s)	270
BsmI	GAATGC	2 cut(s)	298, 544
BsnI	GGCC	2 cut(s)	768, 842
BsoBI	CYCGRG	2 cut(s)	203, 272
Bsp143I	GATC	2 cut(s)	235, 741
Bsp1720I	GCTNAGC	1 cut(s)	864
BspANI	GGCC	2 cut(s)	768, 842
BspCNI	CTCAG	6 cut(s)	280, 388, 424, 445, 628, 877
BspHI	TCATGA	2 cut(s)	288, 475
BspLI	GGNNCC	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	235, 741
BssNI	GRCGYC	2 cut(s)	11, 1006
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	488, 494
Bst6I	CTCTTC	2 cut(s)	312, 1071
BstACI	GRCGYC	2 cut(s)	11, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	6 cut(s)	267, 396, 411, 432, 636, 864
BstF5I	GGATG	3 cut(s)	162, 655, 931
BstH2I	RGCGCY	2 cut(s)	199, 1056
BstHHI	GCGC	2 cut(s)	198, 1055
BstKTI	GATC	2 cut(s)	238, 744
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	235, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 115, 257, 605, 1012
BstV1I	GCAGC	5 cut(s)	102, 102, 132, 235, 238
BstV2I	GAAGAC	2 cut(s)	288, 614
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	768, 842
BtgZI	GCGATG	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	162, 655, 931
BtsIMutI	CAGTG	3 cut(s)	393, 419, 695
Cac8I	GCNNGC	1 cut(s)	429
CciI	TCATGA	2 cut(s)	288, 475
CfoI	GCGC	2 cut(s)	198, 1055
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	120, 208, 841
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	4 cut(s)	289, 476, 764, 1094
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	6 cut(s)	267, 396, 411, 432, 636, 864
DpnI	GATC	2 cut(s)	237, 743
DpnII	GATC	2 cut(s)	235, 741
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	312, 1071
EarI	CTCTTC	2 cut(s)	312, 1071
EciI	GGCGGA	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	120, 208
Eco47III	AGCGCT	1 cut(s)	1054
Eco57I	CTGAAG	2 cut(s)	131, 671
Eco88I	CYCGRG	2 cut(s)	203, 272
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRI	GAATTC	1 cut(s)	755
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	4 cut(s)	292, 479, 767, 1097
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FatI	CATG	4 cut(s)	288, 475, 763, 1093
FauI	CCCGC	2 cut(s)	262, 385
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	9 cut(s)	88, 91, 107, 116, 146, 199, 224, 227, 258
FokI	GGATG	3 cut(s)	149, 642, 918
Fsp4HI	GCNGC	9 cut(s)	88, 91, 107, 116, 146, 199, 224, 227, 258
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	2 cut(s)	197, 1054
GluI	GCNGC	9 cut(s)	88, 91, 107, 116, 146, 199, 224, 227, 258
HaeII	RGCGCY	2 cut(s)	199, 1056
HaeIII	GGCC	2 cut(s)	768, 842
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	2 cut(s)	198, 1055
Hin1I	GRCGYC	2 cut(s)	11, 1006
Hin1II	CATG	4 cut(s)	292, 479, 767, 1097
Hin6I	GCGC	2 cut(s)	196, 1053
HinP1I	GCGC	2 cut(s)	196, 1053
HincII	GTYRAC	2 cut(s)	373, 408
HindII	GTYRAC	2 cut(s)	373, 408
HinfI	GANTC	4 cut(s)	245, 263, 409, 830
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	5 cut(s)	92, 121, 325, 793, 893
Hpy166II	GTNNAC	2 cut(s)	373, 408
Hpy188I	TCNGA	4 cut(s)	435, 604, 898, 940
Hpy188III	TCNNGA	2 cut(s)	289, 476
Hpy8I	GTNNAC	2 cut(s)	373, 408
Hpy99I	CGWCG	3 cut(s)	185, 317, 1070
HpyAV	CCTTC	3 cut(s)	142, 178, 430
HpyCH4III	ACNGT	2 cut(s)	488, 494
HpyCH4IV	ACGT	2 cut(s)	97, 330
HpyCH4V	TGCA	9 cut(s)	148, 448, 535, 542, 599, 608, 699, 902, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 115, 257, 605, 1012
HpyF3I	CTNAG	6 cut(s)	267, 396, 411, 432, 636, 864
HpySE526I	ACGT	2 cut(s)	97, 330
Hsp92I	GRCGYC	2 cut(s)	11, 1006
Hsp92II	CATG	4 cut(s)	292, 479, 767, 1097
HspAI	GCGC	2 cut(s)	196, 1053
Kzo9I	GATC	2 cut(s)	235, 741
LmnI	GCTCC	4 cut(s)	142, 220, 469, 586
LpnPI	CCDG	5 cut(s)	116, 413, 672, 858, 968
Lsp1109I	GCAGC	5 cut(s)	102, 102, 132, 235, 238
LweI	GCATC	4 cut(s)	457, 595, 608, 889
MaeI	CTAG	1 cut(s)	849
MaeII	ACGT	2 cut(s)	97, 330
MaeIII	GTNAC	5 cut(s)	98, 331, 488, 881, 906
MalI	GATC	2 cut(s)	237, 743
MboI	GATC	2 cut(s)	235, 741
MboII	GAAGA	7 cut(s)	293, 329, 614, 806, 809, 1085, 1088
MluCI	AATT	5 cut(s)	418, 550, 755, 808, 853
MlyI	GAGTC	3 cut(s)	239, 272, 403
MmeI	TCCRAC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	2 cut(s)	627, 1108
MslI	CAYNNNNRTG	2 cut(s)	594, 948
MspA1I	CMGCKG	3 cut(s)	145, 380, 662
MspI	CCGG	1 cut(s)	103
Mva1269I	GAATGC	2 cut(s)	298, 544
MwoI	GCNNNNNNNGC	5 cut(s)	112, 115, 257, 605, 1012
NdeII	GATC	2 cut(s)	235, 741
NlaIII	CATG	4 cut(s)	292, 479, 767, 1097
NlaIV	GGNNCC	1 cut(s)	843
NmeAIII	GCCGAG	2 cut(s)	286, 535
NmuCI	GTSAC	4 cut(s)	98, 331, 488, 881
NsiI	ATGCAT	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	2 cut(s)	288, 475
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 189, 240
PctI	GAATGC	2 cut(s)	298, 544
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	830
PkrI	GCNGC	9 cut(s)	89, 92, 108, 117, 147, 200, 225, 228, 259
PleI	GAGTC	3 cut(s)	239, 271, 403
PpsI	GAGTC	3 cut(s)	239, 271, 403
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	3 cut(s)	120, 208, 841
PspXI	VCTCGAGB	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	594, 948
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	627, 1108
SatI	GCNGC	9 cut(s)	88, 91, 107, 116, 146, 199, 224, 227, 258
Sau3AI	GATC	2 cut(s)	235, 741
Sau96I	GGNCC	3 cut(s)	120, 208, 841
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	3 cut(s)	239, 272, 403
SfaNI	GCATC	4 cut(s)	457, 595, 608, 889
Sfr274I	CTCGAG	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	120, 208
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	594, 948
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	418, 550, 755, 808, 853
SspMI	CTAG	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	488, 494
TaiI	ACGT	2 cut(s)	100, 333
TaqI	TCGA	6 cut(s)	171, 192, 204, 234, 372, 833
TasI	AATT	5 cut(s)	418, 550, 755, 808, 853
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	4 cut(s)	90, 109, 201, 260
TfiI	GAWTC	1 cut(s)	830
Tru1I	TTAA	2 cut(s)	627, 1108
Tru9I	TTAA	2 cut(s)	627, 1108
TscAI	CASTG	3 cut(s)	400, 419, 695
TseFI	GTSAC	4 cut(s)	98, 331, 488, 881
TseI	GCWGC	5 cut(s)	90, 115, 145, 223, 226
Tsp45I	GTSAC	4 cut(s)	98, 331, 488, 881
TspDTI	ATGAA	8 cut(s)	277, 305, 379, 464, 750, 752, 807, 1086
TspGWI	ACGGA	2 cut(s)	900, 1094
TspRI	CASTG	3 cut(s)	400, 419, 695
VpaK11BI	GGWCC	2 cut(s)	120, 208
XapI	RAATTY	3 cut(s)	418, 755, 853
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	849
ZrmI	AGTACT	1 cut(s)	444
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.