Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Forward (+)

33792483 .. 33795779

Gene Structure 3297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTGAGGGCGTCAGTATTGATATACATCACAGTAGCACTCCTAGTGCTGCTGCTCATCTCCCAGTCCCCCAAGAAATCCGGCAACCACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACATTCGCTCATTCCCGCAACCCCATCCCCTTCGACCCTCTTGTCGCCGACATCGAGCGCCGCCGCGAGGACCGCAAGTGGGAGAAGGAGCACCTGGATCTCGACTCCGCCCCCGCCGCCGAGTCCCAGCCCGAGTGGGAGGATTTCATGGACGCCGAGGACTACTTGAACGACGAGGACAAGTTCAACGTCACCAACAGGCTGGTGTTGCTGTTCCCCAAGGTCGATGTCGAACCTGTCGATGGGTTTATCACCGAGCACGAGTTGACTCTCTGGAACTTGAACCAGGCCCAGCGGGAAGTTCTGCACAGGACTCAAAGGGATATGGAGCTTCATGATAAGAATGGCGACGGCTTTGTTTCCTTTCAAGAGTACCAACCCCCTAGCTGGGTTCAGAATGCAGATAACAATTCATTTGGCTATGATATGGGGTGGTGGAAAGAGGAGCACTTTAATGCATCAGATGCAGATGGAGATGGTCTTCTTAATCTCACTGAGTTCAATGACTTCCTACACCCAGCTGACAGCAAAAACCCAAAGCTACTTCAGTGGTTGTGCAAGGAGGAAGTAAGAGAGAGGGATACAGACAAAGATGGAAAGGTTAACTTCAAAGAATTCTTTCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAGATCACAATGCCACACATCAGTCTGATGATTTGATGGAGGCCCCAGCTAAAACTTTGTTTGCACAGCTTGACAAAGATGGTGACGGATACTTGTCAGATGCTGAGTTACTTCCCATTATTGGAAAAATACATCCATCAGAACATTACTATGCGAAACAACAAGCAGATTACATCATATCACAGGCAGATACGGATAAAGATGGACGCTTGTCACTGAGCGAGATGATAGAGAACCCATATGTATTTTACAGCGCTATTTTCAATGATGAAGACGATGAGGATTATGGGTTCCATGACGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

365

Amino Acids

42.57

Weight (kDa)

4.66

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	191 - 250	4.1e-06	EF-hand domain pair
SPARC_Ca_bdg	PF10591	225 - 338	1.4e-06	Secreted protein acidic and rich in cysteine Ca binding region
EF-hand_7	PF13499	278 - 339	1.6e-10	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	2 cut(s)	11, 279
AfaI	GTAC	1 cut(s)	500
AfeI	AGCGCT	1 cut(s)	1039
AfiI	CCNNNNNNNGG	6 cut(s)	193, 205, 368, 513, 514, 905
AgsI	TTSAA	7 cut(s)	295, 313, 409, 494, 628, 736, 1048
AjnI	CCWGG	2 cut(s)	219, 411
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AloI	GAACNNNNNNTCC	2 cut(s)	1058, 1090
AluBI	AGCT	7 cut(s)	112, 457, 513, 647, 667, 833, 853
AluI	AGCT	7 cut(s)	112, 457, 513, 647, 667, 833, 853
Alw21I	GWGCWC	3 cut(s)	219, 387, 576
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	1039
AoxI	GGCC	3 cut(s)	414, 751, 825
ApeKI	GCWGC	2 cut(s)	49, 52
ApoI	RAATTY	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	186, 1040
AspS9I	GGNCC	3 cut(s)	196, 415, 826
AsuHPI	GGTGA	5 cut(s)	16, 310, 370, 778, 878
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	599, 1062
Bbv12I	GWGCWC	3 cut(s)	219, 387, 576
BbvI	GCAGC	2 cut(s)	36, 39
BccI	CCATC	9 cut(s)	158, 362, 590, 596, 713, 814, 857, 928, 980
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	221, 413
BciVI	GTATCC	2 cut(s)	700, 866
BfaI	CTAG	2 cut(s)	44, 510
BfoI	RGCGCY	2 cut(s)	187, 1041
BfuI	GTATCC	2 cut(s)	700, 866
BisI	GCNGC	6 cut(s)	50, 53, 103, 187, 190, 243
BlsI	GCNGC	6 cut(s)	51, 54, 104, 188, 191, 244
Bme1390I	CCNGG	2 cut(s)	221, 413
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	196, 415, 826
BmiI	GGNNCC	2 cut(s)	828, 1076
BmrFI	CCNGG	2 cut(s)	221, 413
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	580, 593, 874
BmuI	ACTGGG	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	994
BpiI	GAAGAC	2 cut(s)	599, 1062
BpuEI	CTTGAG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	2 cut(s)	11, 279
BsaJI	CCNNGG	2 cut(s)	282, 345
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 205, 368, 513, 514, 905
Bse1I	ACTGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	221, 413
BseDI	CCNNGG	2 cut(s)	282, 345
BseGI	GGATG	2 cut(s)	150, 916
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	6 cut(s)	193, 205, 368, 513, 514, 905
BseMII	CTCAG	3 cut(s)	612, 879, 992
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	36, 39
BseYI	CCCAGC	5 cut(s)	252, 417, 513, 643, 829
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	416, 753, 827
BsiHKAI	GWGCWC	3 cut(s)	219, 387, 576
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	52, 235
BslI	CCNNNNNNNGG	6 cut(s)	193, 205, 368, 513, 514, 905
BsmFI	GGGAC	2 cut(s)	52, 235
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	416, 753, 827
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	219, 387, 576
Bsp143I	GATC	2 cut(s)	223, 787
BspANI	GGCC	3 cut(s)	416, 753, 827
BspCNI	CTCAG	3 cut(s)	613, 880, 993
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	828, 1076
BspPI	GGATC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	282, 345
BssMI	GATC	2 cut(s)	223, 787
BssNI	GRCGYC	2 cut(s)	11, 279
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	221, 413
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	2 cut(s)	11, 279
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	621, 888, 1001
BstF5I	GGATG	2 cut(s)	150, 916
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	2 cut(s)	187, 1041
BstHHI	GCGC	2 cut(s)	186, 1040
BstKTI	GATC	2 cut(s)	226, 790
BstMBI	GATC	2 cut(s)	223, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 198, 242, 334, 590
BstNI	CCWGG	2 cut(s)	221, 413
BstPAI	GACNNNNGTC	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	219, 411
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	36, 39
BstV2I	GAAGAC	2 cut(s)	599, 1062
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	2 cut(s)	700, 866
BsuRI	GGCC	3 cut(s)	416, 753, 827
BtsCI	GGATG	2 cut(s)	150, 916
BtsIMutI	CAGTG	3 cut(s)	618, 680, 998
CaiI	CAGNNNCTG	1 cut(s)	887
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	2 cut(s)	186, 1040
Cfr13I	GGNCC	3 cut(s)	196, 415, 826
CseI	GACGC	2 cut(s)	287, 999
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	274, 461, 749, 1079
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	621, 888, 1001
DpnI	GATC	2 cut(s)	225, 789
DpnII	GATC	2 cut(s)	223, 787
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	196
Eco47III	AGCGCT	1 cut(s)	1039
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	826
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	219, 411
EcoT14I	CCWWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	277, 464, 752, 1082
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	2 cut(s)	52, 235
FatI	CATG	4 cut(s)	273, 460, 748, 1078
FauI	CCCGC	3 cut(s)	149, 247, 414
FauNDI	CATATG	1 cut(s)	1024
Fnu4HI	GCNGC	6 cut(s)	50, 53, 103, 187, 190, 243
FokI	GGATG	2 cut(s)	137, 903
Fsp4HI	GCNGC	6 cut(s)	50, 53, 103, 187, 190, 243
FspBI	CTAG	2 cut(s)	44, 510
GlaI	GCGC	2 cut(s)	185, 1039
GluI	GCNGC	6 cut(s)	50, 53, 103, 187, 190, 243
GsaI	CCCAGC	5 cut(s)	256, 421, 517, 647, 833
HaeII	RGCGCY	2 cut(s)	187, 1041
HaeIII	GGCC	3 cut(s)	416, 753, 827
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	2 cut(s)	287, 999
HhaI	GCGC	2 cut(s)	186, 1040
Hin1I	GRCGYC	2 cut(s)	11, 279
Hin1II	CATG	4 cut(s)	277, 464, 752, 1082
Hin6I	GCGC	2 cut(s)	184, 1038
HinP1I	GCGC	2 cut(s)	184, 1038
HincII	GTYRAC	2 cut(s)	393, 730
HindII	GTYRAC	2 cut(s)	393, 730
HinfI	GANTC	4 cut(s)	230, 248, 394, 439
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	5 cut(s)	16, 310, 370, 778, 878
Hpy166II	GTNNAC	2 cut(s)	393, 730
Hpy188I	TCNGA	5 cut(s)	522, 589, 811, 883, 925
Hpy188III	TCNNGA	4 cut(s)	227, 400, 461, 494
Hpy8I	GTNNAC	2 cut(s)	393, 730
Hpy99I	CGWCG	2 cut(s)	302, 479
HpyAV	CCTTC	2 cut(s)	166, 205
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	6 cut(s)	433, 527, 584, 593, 684, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 198, 242, 334, 590
HpyF3I	CTNAG	3 cut(s)	621, 888, 1001
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	11, 279
Hsp92II	CATG	4 cut(s)	277, 464, 752, 1082
HspAI	GCGC	2 cut(s)	184, 1038
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	223, 787
LmnI	GCTCC	5 cut(s)	117, 122, 214, 454, 571
Lsp1109I	GCAGC	2 cut(s)	36, 39
LweI	GCATC	3 cut(s)	580, 593, 874
MaeI	CTAG	2 cut(s)	44, 510
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	4 cut(s)	316, 866, 891, 996
MalI	GATC	2 cut(s)	225, 789
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	223, 787
MboII	GAAGA	4 cut(s)	599, 794, 797, 1067
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	3 cut(s)	219, 387, 576
MluCI	AATT	2 cut(s)	535, 740
MlyI	GAGTC	4 cut(s)	224, 257, 388, 433
MmeI	TCCRAC	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	4 cut(s)	579, 612, 729, 1093
MslI	CAYNNNNRTG	2 cut(s)	579, 933
MspA1I	CMGCKG	2 cut(s)	421, 647
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	221, 413
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	221, 413
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	102, 198, 242, 334, 590
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	2 cut(s)	223, 787
NlaIII	CATG	4 cut(s)	277, 464, 752, 1082
NlaIV	GGNNCC	2 cut(s)	828, 1076
NmeAIII	GCCGAG	2 cut(s)	271, 307
NmuCI	GTSAC	3 cut(s)	316, 866, 996
NsiI	ATGCAT	1 cut(s)	586
PagI	TCATGA	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 363
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	744
PkrI	GCNGC	6 cut(s)	51, 54, 104, 188, 191, 244
PleI	GAGTC	4 cut(s)	224, 256, 388, 433
PpsI	GAGTC	4 cut(s)	224, 256, 388, 433
PshAI	GACNNNNGTC	1 cut(s)	994
Psp6I	CCWGG	2 cut(s)	219, 411
PspFI	CCCAGC	5 cut(s)	252, 417, 513, 643, 829
PspGI	CCWGG	2 cut(s)	219, 411
PspN4I	GGNNCC	2 cut(s)	828, 1076
PspPI	GGNCC	3 cut(s)	196, 415, 826
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	2 cut(s)	579, 933
SaqAI	TTAA	4 cut(s)	579, 612, 729, 1093
SatI	GCNGC	6 cut(s)	50, 53, 103, 187, 190, 243
Sau3AI	GATC	2 cut(s)	223, 787
Sau96I	GGNCC	3 cut(s)	196, 415, 826
SchI	GAGTC	4 cut(s)	224, 257, 388, 433
ScrFI	CCNGG	2 cut(s)	221, 413
SduI	GDGCHC	3 cut(s)	219, 387, 576
SfaNI	GCATC	3 cut(s)	580, 593, 874
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	579, 933
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	535, 740
SspMI	CTAG	2 cut(s)	44, 510
StyD4I	CCNGG	2 cut(s)	219, 411
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	6 cut(s)	159, 180, 228, 351, 357, 366
TasI	AATT	2 cut(s)	535, 740
TauI	GCSGC	4 cut(s)	105, 189, 192, 245
Tru1I	TTAA	4 cut(s)	579, 612, 729, 1093
Tru9I	TTAA	4 cut(s)	579, 612, 729, 1093
TscAI	CASTG	3 cut(s)	625, 680, 1005
TseFI	GTSAC	3 cut(s)	316, 866, 996
TseI	GCWGC	2 cut(s)	49, 52
Tsp45I	GTSAC	3 cut(s)	316, 866, 996
TspDTI	ATGAA	6 cut(s)	262, 449, 528, 737, 795, 1068
TspGWI	ACGGA	3 cut(s)	885, 992, 1079
TspRI	CASTG	3 cut(s)	625, 680, 1005
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	2 cut(s)	44, 510
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.