Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Forward (+)

66025970 .. 66029172

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGAGGAGGGCTTCGGTATTGATATACATCACCATAGCTCTCCTGGTGTTGCTGCTCATCTCCTGGTCCCCCAAGAAACCAGCCAACCGCCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACCTTCGCTCCTCCCCTCCACCATTCTCACAATCCCATCCCCTTCGACCCTCTCGTCGCCGACATCGAGCGCCGCCGCGAGGACCGCAAGTGGGAGAAGGAGCACCTCGATTTCGATTTGGATCACCACCACTCCGACTCCGCCCCCGCCGCCGAGTCCCAGCCCGAGTGGGAGGATTTCATGGACGCCGAGGACTACCTGAATGACGAGGACAAGTTCAATGTCACCAACAGGCTGGTCTTGTTGTTCCCCAAGGTTGATGTGGACCCCGTCGACGGCTTTATCACCGAGCACGAGCTCACTCTCTGGAACCTGAAGCAGGCTCAGAGGGAAGTTTTGCATAGGACTCAGAGGGATATGGAGCTTCATGATAAGAATCGTGACGGCTTTGTTTCCTTTCAAGAGTACCAACCCCTAGCTGGGTTCAGAATGCGGGAACACCATGTATCAGATAACAACTCATTTGGCTATGATATGGGCTGGTGGAAACAAGAGCATTTTAATGCATCAGATGCAGATGCAGATGGTCTTCTCAATCTAACTGAGTTCAATGACTTCCTGCACCCGGCTGACAGCAAAAACCCAAAGCTACTTCACTGGTTGTGCAAGGAGGAAGTAAGAGAGAGGGATACAGACAAAGATGGAAAGATTAACTTCAAAGAATTTTTCCATGGCCTCTTTGATTTGGTGAGGAACTATGATGAAGAAGATCACAATTCCACACATCAGTCTGATGATTTGATGGAGGCCCGGCTAAAACTTTGTTTGCCCAGCTTGACAAAGATGGTGACGGATGTTGAGTTACTTCCCATTATTGGAAAAATACATCCATCAGAACATTACTATGCGAAACAACAATCAGATTACATCATATCACAGGCAGATACAAATAAAGATGGGGGCTTGTCACTGAGCGAGATGATTGAGAACCCATATGTATTTTACAGCGCTATTTTCAATGATGACGATGAAGAGGACTATGGGTTCCATGATGAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

376

Amino Acids

44.36

Weight (kDa)

5.08

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	204
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	533
AfeI	AGCGCT	1 cut(s)	1075
AfiI	CCNNNNNNNGG	8 cut(s)	205, 217, 401, 445, 545, 546, 691, 941
AgsI	TTSAA	5 cut(s)	346, 527, 676, 784, 1084
AjnI	CCWGG	2 cut(s)	45, 65
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AloI	GAACNNNNNNTCC	2 cut(s)	1094, 1126
AluBI	AGCT	7 cut(s)	41, 112, 424, 490, 545, 715, 900
AluI	AGCT	7 cut(s)	41, 112, 424, 490, 545, 715, 900
Alw21I	GWGCWC	3 cut(s)	231, 420, 426
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	1075
AoxI	GGCC	2 cut(s)	799, 873
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	788
AspLEI	GCGC	2 cut(s)	198, 1076
AspS9I	GGNCC	4 cut(s)	69, 208, 391, 874
AsuC2I	CCSGG	2 cut(s)	692, 877
AsuHPI	GGTGA	7 cut(s)	25, 118, 242, 343, 403, 826, 925
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	69, 208, 391
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	647
Bbv12I	GWGCWC	3 cut(s)	231, 420, 426
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	7 cut(s)	170, 644, 761, 862, 904, 964, 1016
BceAI	ACGGC	2 cut(s)	418, 526
BciT130I	CCWGG	2 cut(s)	47, 67
BciVI	GTATCC	1 cut(s)	748
BcnI	CCSGG	2 cut(s)	692, 877
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	2 cut(s)	199, 1077
BfuI	GTATCC	1 cut(s)	748
BisI	GCNGC	6 cut(s)	56, 94, 103, 199, 202, 276
BlsI	GCNGC	6 cut(s)	57, 95, 104, 200, 203, 277
Bme1390I	CCNGG	4 cut(s)	47, 67, 692, 877
Bme18I	GGWCC	3 cut(s)	69, 208, 391
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	4 cut(s)	69, 208, 391, 874
BmiI	GGNNCC	4 cut(s)	71, 393, 437, 1112
BmrFI	CCNGG	4 cut(s)	47, 67, 692, 877
BmsI	GCATC	3 cut(s)	628, 634, 641
BpiI	GAAGAC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	692, 877
BsaBI	GATNNNNATC	3 cut(s)	29, 246, 501
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	315, 378, 796
BsaXI	ACNNNNNCTCC	6 cut(s)	118, 148, 242, 248, 272, 278
Bsc4I	CCNNNNNNNGG	8 cut(s)	205, 217, 401, 445, 545, 546, 691, 941
Bse1I	ACTGG	1 cut(s)	728
Bse8I	GATNNNNATC	3 cut(s)	29, 246, 501
BseBI	CCWGG	2 cut(s)	47, 67
BseDI	CCNNGG	3 cut(s)	315, 378, 796
BseGI	GGATG	3 cut(s)	162, 925, 952
BseJI	GATNNNNATC	3 cut(s)	29, 246, 501
BseLI	CCNNNNNNNGG	8 cut(s)	205, 217, 401, 445, 545, 546, 691, 941
BseMII	CTCAG	4 cut(s)	464, 488, 660, 1028
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	2 cut(s)	22, 126
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	3 cut(s)	285, 545, 896
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	801, 875
BsiHKAI	GWGCWC	3 cut(s)	231, 420, 426
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	692, 877
BslFI	GGGAC	2 cut(s)	55, 268
BslI	CCNNNNNNNGG	8 cut(s)	205, 217, 401, 445, 545, 546, 691, 941
BsmFI	GGGAC	2 cut(s)	55, 268
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	2 cut(s)	801, 875
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	231, 420, 426
Bsp143I	GATC	2 cut(s)	247, 835
Bsp19I	CCATGG	1 cut(s)	796
BspANI	GGCC	2 cut(s)	801, 875
BspCNI	CTCAG	4 cut(s)	463, 487, 661, 1029
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	4 cut(s)	71, 393, 437, 1112
BspPI	GGATC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	3 cut(s)	315, 378, 796
BssMI	GATC	2 cut(s)	247, 835
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	378, 796
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	47, 67
Bst6I	CTCTTC	1 cut(s)	1092
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	4 cut(s)	450, 474, 669, 1037
BstDSI	CCRYGG	1 cut(s)	796
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	162, 925, 952
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	2 cut(s)	199, 1077
BstHHI	GCGC	2 cut(s)	198, 1076
BstKTI	GATC	2 cut(s)	250, 838
BstMBI	GATC	2 cut(s)	247, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 102, 210, 275, 638
BstNI	CCWGG	2 cut(s)	47, 67
BstSCI	CCNGG	4 cut(s)	45, 65, 690, 875
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	647
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	801, 875
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	3 cut(s)	162, 925, 952
BtsIMutI	CAGTG	2 cut(s)	721, 1034
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	2 cut(s)	198, 1076
Cfr13I	GGNCC	4 cut(s)	69, 208, 391, 874
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	5 cut(s)	307, 494, 569, 797, 1115
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	4 cut(s)	450, 474, 669, 1037
DpnI	GATC	2 cut(s)	249, 837
DpnII	GATC	2 cut(s)	247, 835
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	1092
EarI	CTCTTC	1 cut(s)	1092
EciI	GGCGGA	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	378, 796
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	69, 208, 391
Eco47III	AGCGCT	1 cut(s)	1075
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	45, 65
EcoT14I	CCWWGG	2 cut(s)	378, 796
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	378, 796
FaeI	CATG	5 cut(s)	310, 497, 572, 800, 1118
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	2 cut(s)	55, 268
FatI	CATG	5 cut(s)	306, 493, 568, 796, 1114
FauI	CCCGC	2 cut(s)	280, 552
FauNDI	CATATG	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	6 cut(s)	56, 94, 103, 199, 202, 276
FokI	GGATG	3 cut(s)	149, 932, 939
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	6 cut(s)	56, 94, 103, 199, 202, 276
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	2 cut(s)	197, 1075
GluI	GCNGC	6 cut(s)	56, 94, 103, 199, 202, 276
GsaI	CCCAGC	3 cut(s)	289, 549, 900
HaeII	RGCGCY	2 cut(s)	199, 1077
HaeIII	GGCC	2 cut(s)	801, 875
HapII	CCGG	2 cut(s)	692, 877
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	2 cut(s)	198, 1076
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	310, 497, 572, 800, 1118
Hin6I	GCGC	2 cut(s)	196, 1074
HinP1I	GCGC	2 cut(s)	196, 1074
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	4 cut(s)	263, 281, 472, 502
HpaII	CCGG	2 cut(s)	692, 877
HphI	GGTGA	7 cut(s)	25, 118, 242, 343, 403, 826, 925
Hpy166II	GTNNAC	2 cut(s)	391, 400
Hpy188I	TCNGA	9 cut(s)	262, 453, 477, 554, 577, 637, 859, 961, 988
Hpy188III	TCNNGA	4 cut(s)	433, 494, 506, 527
Hpy8I	GTNNAC	2 cut(s)	391, 400
Hpy99I	CGWCG	3 cut(s)	185, 401, 404
HpyAV	CCTTC	3 cut(s)	139, 178, 217
HpyCH4V	TGCA	6 cut(s)	466, 632, 641, 647, 688, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 102, 210, 275, 638
HpyF3I	CTNAG	4 cut(s)	450, 474, 669, 1037
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	310, 497, 572, 800, 1118
HspAI	GCGC	2 cut(s)	196, 1074
Kzo9I	GATC	2 cut(s)	247, 835
LmnI	GCTCC	5 cut(s)	117, 122, 139, 226, 487
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	3 cut(s)	628, 634, 641
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	5 cut(s)	349, 506, 913, 927, 1032
MalI	GATC	2 cut(s)	249, 837
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	247, 835
MboII	GAAGA	4 cut(s)	647, 842, 845, 1109
MhlI	GDGCHC	3 cut(s)	231, 420, 426
MluCI	AATT	2 cut(s)	788, 841
MlyI	GAGTC	3 cut(s)	257, 290, 466
MmeI	TCCRAC	2 cut(s)	144, 285
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	3 cut(s)	627, 777, 1129
MslI	CAYNNNNRTG	2 cut(s)	627, 969
MspI	CCGG	2 cut(s)	692, 877
MspR9I	CCNGG	4 cut(s)	47, 67, 692, 877
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	47, 67
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	99, 102, 210, 275, 638
NciI	CCSGG	2 cut(s)	692, 877
NcoI	CCATGG	1 cut(s)	796
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	2 cut(s)	247, 835
NlaIII	CATG	5 cut(s)	310, 497, 572, 800, 1118
NlaIV	GGNNCC	4 cut(s)	71, 393, 437, 1112
NmeAIII	GCCGAG	2 cut(s)	304, 340
NmuCI	GTSAC	4 cut(s)	349, 506, 913, 1032
NsiI	ATGCAT	1 cut(s)	634
PagI	TCATGA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 189
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	502
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	57, 95, 104, 200, 203, 277
PleI	GAGTC	3 cut(s)	257, 289, 466
PpsI	GAGTC	3 cut(s)	257, 289, 466
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	45, 65
PspFI	CCCAGC	3 cut(s)	285, 545, 896
PspGI	CCWGG	2 cut(s)	45, 65
PspN4I	GGNNCC	4 cut(s)	71, 393, 437, 1112
PspPI	GGNCC	4 cut(s)	69, 208, 391, 874
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	2 cut(s)	627, 969
SacI	GAGCTC	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	627, 777, 1129
SatI	GCNGC	6 cut(s)	56, 94, 103, 199, 202, 276
Sau3AI	GATC	2 cut(s)	247, 835
Sau96I	GGNCC	4 cut(s)	69, 208, 391, 874
SchI	GAGTC	3 cut(s)	257, 290, 466
ScrFI	CCNGG	4 cut(s)	47, 67, 692, 877
SduI	GDGCHC	3 cut(s)	231, 420, 426
SfaNI	GCATC	3 cut(s)	628, 634, 641
SgrDI	CGTCGACG	1 cut(s)	398
SinI	GGWCC	3 cut(s)	69, 208, 391
SmiMI	CAYNNNNRTG	2 cut(s)	627, 969
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	788, 841
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	4 cut(s)	45, 65, 690, 875
StyI	CCWWGG	2 cut(s)	378, 796
TaqI	TCGA	5 cut(s)	171, 192, 234, 240, 399
TasI	AATT	2 cut(s)	788, 841
TauI	GCSGC	5 cut(s)	96, 105, 201, 204, 278
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	627, 777, 1129
Tru9I	TTAA	3 cut(s)	627, 777, 1129
TscAI	CASTG	2 cut(s)	728, 1041
TseFI	GTSAC	4 cut(s)	349, 506, 913, 1032
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	4 cut(s)	349, 506, 913, 1032
TspDTI	ATGAA	4 cut(s)	295, 482, 843, 1110
TspGWI	ACGGA	2 cut(s)	932, 1115
TspRI	CASTG	2 cut(s)	728, 1041
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	69, 208, 391
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	3 cut(s)	43, 385, 542
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.