Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Forward (+)

64076488 .. 64080200

Gene Structure 3713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGAGGGCGTCGGTATTGATATACATCACCATAGCTCTCCTGGTGTTGCTGCTCATCTCCTGGTCCCCCAATAAACCCGCCAACCACCGCCACCGCCGCCTCAAGCTCCGCTCCAACTTCACCTTCGCTCCTCCCCTCCACCATTCTCACAATCCCATCCCCTTCGACCCTCTCGTCGCCGACATCGAGCGCCGCCGCGAGGACCGCAAGTGGGAGAAGGAGCACCTCGACCTCGACCTCGATTTGGATCACCACGACTCCGCCCCCGCCGCCGAGTCCCAGCCCGAGTGGGAGGATTTCATGGACGCCGAGGACTACCTGAATGACGAGGACAAGTTCAATGTCACCAACAGGCTGGTCTTGTTGTTCCCCAAGGTTGATGTGGACCCCGTCGATGGCTTTATCACCGAGCACGAGCTGACTCTCTGGAACCTGAACCAGGCTCAGAGGGAAGTTTTGCATAGGACTCACAGGGATATGGAGCTTCATGATAAGAATCGTGACGGCTTTGTTTCCTTCCAAGAGTACAAACCCCCTAGCTGGGTTCAGAATGCTGATAACAACTCATTTGGCTATGATATGGGCTGGTGGAAAGAAGAGCATTTTAATGCATCAGATGCAGACGGAGATGGTCTTCTCAATCTAACAGAGTTCAATGACTTCCTGCACCCGGCTGACAGCAAAAACCCAAAGCTACTTCAGTGGTTGTGCAAGGAGGAAGTGAGAGAGAGGGATACAGACAAAGATGGAACATTAACTTCAAAGAATTTTTCCATGGCCTCTTTGATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

265

Amino Acids

31.13

Weight (kDa)

5.06

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	769
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	11, 309
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	8 cut(s)	202, 214, 247, 398, 442, 543, 544, 673
AgsI	TTSAA	3 cut(s)	343, 658, 765
AjnI	CCWGG	3 cut(s)	42, 62, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	38, 109, 421, 487, 543, 697
AluI	AGCT	6 cut(s)	38, 109, 421, 487, 543, 697
Alw21I	GWGCWC	2 cut(s)	228, 417
AlwI	GGATC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	66, 205, 388
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	5 cut(s)	22, 115, 245, 340, 400
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	3 cut(s)	66, 205, 388
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	2 cut(s)	228, 417
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	4 cut(s)	167, 392, 626, 743
BceAI	ACGGC	1 cut(s)	523
BciT130I	CCWGG	3 cut(s)	44, 64, 443
BciVI	GTATCC	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	674
BfaI	CTAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	5 cut(s)	53, 100, 196, 199, 273
BlsI	GCNGC	5 cut(s)	54, 101, 197, 200, 274
Bme1390I	CCNGG	4 cut(s)	44, 64, 443, 674
Bme18I	GGWCC	3 cut(s)	66, 205, 388
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	66, 205, 388
BmiI	GGNNCC	3 cut(s)	68, 390, 434
BmrFI	CCNGG	4 cut(s)	44, 64, 443, 674
BmsI	GCATC	2 cut(s)	610, 623
BpiI	GAAGAC	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	674
BsaBI	GATNNNNATC	3 cut(s)	26, 249, 498
BsaHI	GRCGYC	2 cut(s)	11, 309
BsaJI	CCNNGG	3 cut(s)	312, 375, 777
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 245, 275
Bsc4I	CCNNNNNNNGG	8 cut(s)	202, 214, 247, 398, 442, 543, 544, 673
Bse8I	GATNNNNATC	3 cut(s)	26, 249, 498
BseBI	CCWGG	3 cut(s)	44, 64, 443
BseDI	CCNNGG	3 cut(s)	312, 375, 777
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	3 cut(s)	26, 249, 498
BseLI	CCNNNNNNNGG	8 cut(s)	202, 214, 247, 398, 442, 543, 544, 673
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	2 cut(s)	282, 543
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	228, 417
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	2 cut(s)	52, 265
BslI	CCNNNNNNNGG	8 cut(s)	202, 214, 247, 398, 442, 543, 544, 673
BsmFI	GGGAC	2 cut(s)	52, 265
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	228, 417
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	777
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	68, 390, 434
BspPI	GGATC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	312, 375, 777
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	2 cut(s)	11, 309
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	375, 777
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	44, 64, 443
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	2 cut(s)	11, 309
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	777
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 207, 272, 620
BstNI	CCWGG	3 cut(s)	44, 64, 443
BstSCI	CCNGG	4 cut(s)	42, 62, 441, 672
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	66, 205, 388
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	3 cut(s)	304, 491, 778
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	375, 777
Eco47I	GGWCC	3 cut(s)	66, 205, 388
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	42, 62, 441
EcoT14I	CCWWGG	2 cut(s)	375, 777
EcoT22I	ATGCAT	1 cut(s)	616
ErhI	CCWWGG	2 cut(s)	375, 777
FaeI	CATG	3 cut(s)	307, 494, 781
FaiI	YATR	9 cut(s)	25, 35, 305, 465, 482, 492, 579, 584, 779
FaqI	GGGAC	2 cut(s)	52, 265
FatI	CATG	3 cut(s)	303, 490, 777
FauI	CCCGC	2 cut(s)	88, 277
Fnu4HI	GCNGC	5 cut(s)	53, 100, 196, 199, 273
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	5 cut(s)	53, 100, 196, 199, 273
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	5 cut(s)	53, 100, 196, 199, 273
GsaI	CCCAGC	2 cut(s)	286, 547
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	2 cut(s)	11, 309
Hin1II	CATG	3 cut(s)	307, 494, 781
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	260, 278, 424, 469, 499
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	5 cut(s)	22, 115, 245, 340, 400
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	450, 552, 619
Hpy188III	TCNNGA	3 cut(s)	430, 491, 503
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	3 cut(s)	16, 182, 398
HpyAV	CCTTC	4 cut(s)	136, 175, 214, 529
HpyCH4V	TGCA	5 cut(s)	463, 614, 623, 670, 714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 207, 272, 620
HpyF3I	CTNAG	1 cut(s)	447
Hsp92I	GRCGYC	2 cut(s)	11, 309
Hsp92II	CATG	3 cut(s)	307, 494, 781
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	5 cut(s)	114, 119, 136, 223, 484
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	610, 623
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	346, 503
MalI	GATC	1 cut(s)	252
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	611, 629
MhlI	GDGCHC	2 cut(s)	228, 417
MluCI	AATT	1 cut(s)	769
MlyI	GAGTC	4 cut(s)	254, 287, 418, 463
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	2 cut(s)	609, 758
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	4 cut(s)	44, 64, 443, 674
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	3 cut(s)	44, 64, 443
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	99, 207, 272, 620
NciI	CCSGG	1 cut(s)	674
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	307, 494, 781
NlaIV	GGNNCC	3 cut(s)	68, 390, 434
NmeAIII	GCCGAG	2 cut(s)	301, 337
NmuCI	GTSAC	2 cut(s)	346, 503
NsiI	ATGCAT	1 cut(s)	616
PagI	TCATGA	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 186
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	499
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	54, 101, 197, 200, 274
PleI	GAGTC	4 cut(s)	254, 286, 418, 463
PpsI	GAGTC	4 cut(s)	254, 286, 418, 463
Psp6I	CCWGG	3 cut(s)	42, 62, 441
PspFI	CCCAGC	2 cut(s)	282, 543
PspGI	CCWGG	3 cut(s)	42, 62, 441
PspN4I	GGNNCC	3 cut(s)	68, 390, 434
PspPI	GGNCC	3 cut(s)	66, 205, 388
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	609
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	609, 758
SatI	GCNGC	5 cut(s)	53, 100, 196, 199, 273
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	66, 205, 388
SchI	GAGTC	4 cut(s)	254, 287, 418, 463
ScrFI	CCNGG	4 cut(s)	44, 64, 443, 674
SduI	GDGCHC	2 cut(s)	228, 417
SfaNI	GCATC	2 cut(s)	610, 623
SinI	GGWCC	3 cut(s)	66, 205, 388
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	42, 62, 441, 672
StyI	CCWWGG	2 cut(s)	375, 777
TaqI	TCGA	6 cut(s)	168, 189, 231, 237, 243, 396
TasI	AATT	1 cut(s)	769
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	4 cut(s)	102, 198, 201, 275
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	609, 758
Tru9I	TTAA	2 cut(s)	609, 758
TscAI	CASTG	1 cut(s)	710
TseFI	GTSAC	2 cut(s)	346, 503
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	346, 503
TspDTI	ATGAA	2 cut(s)	292, 479
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	1 cut(s)	710
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	66, 205, 388
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 382
XspI	CTAG	1 cut(s)	540
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.