Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8164088.1

Orthogroup ID

OG0011504

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 485

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8164088.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

atggggagggcgtcggtattgatatacatcaccatagctctcctggtgttgctgctcatctcctggtcccccaagaaacccgccaaccaccgccaccgccgcctcaagctccgctccaacttcaccttcgctcctcccctccaccattctcacaatcccatccccttcgaccctctcgtcgccgacatcgagcgccgccgcgaggaccgcaagtgggagaaggagcacctcgacctcgacctcgatttggatcaccacgactccgcccccgccgccgagtcccagcccgagtgggaggatttcatggacgccgaggactacctgaatgacgaggacaagttcaatgtcaccaacaggctgctcttgttgttccccaaggttgatgtggaccccgtcgatggctttatcaccgagcacgagctgactctctggaacctgaaccaggctcagagggaagttttgcataggactcacagggatatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

161

Amino Acids

19.05

Weight (kDa)

5.6

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08580 AT5G08580
fragaria_vesca	FvH4_4g37230
malus_domestica	MD00G1127000.v1.1 MD13G1002500.v1.1
prunus_persica	Prupe.1G349900_v2.0.a1
pyrus_communis	pycom13g00210 pycom16g00130
rosa_chinensis	RchiOBHm_Chr4g0447021
rosa_laevigata	RLG00000005612
rosa_multiflora	Rmu_co8164088.1_g000001 Rmu_sc0001753.1_g000001 Rmu_sc0019356.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387340
rosa_rugosa	Rorug04G0377100
rosa_samantha	Rh4AG438600 Rh4BG447600 Rh4CG464700 Rh4DG446200
rosa_wichuraiana	Rw4G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	258
AcyI	GRCGYC	2 cut(s)	11, 309
AfiI	CCNNNNNNNGG	5 cut(s)	202, 214, 247, 398, 442
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	42, 62, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	38, 109, 421
AluI	AGCT	3 cut(s)	38, 109, 421
Alw21I	GWGCWC	2 cut(s)	228, 417
AlwI	GGATC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	52, 358
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	66, 205, 388
AsuHPI	GGTGA	5 cut(s)	22, 115, 245, 340, 400
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	3 cut(s)	66, 205, 388
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	228, 417
BbvI	GCAGC	2 cut(s)	39, 345
BccI	CCATC	2 cut(s)	167, 392
BciT130I	CCWGG	3 cut(s)	44, 64, 443
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	6 cut(s)	53, 100, 196, 199, 273, 359
BlsI	GCNGC	6 cut(s)	54, 101, 197, 200, 274, 360
Bme1390I	CCNGG	3 cut(s)	44, 64, 443
Bme18I	GGWCC	3 cut(s)	66, 205, 388
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	66, 205, 388
BmiI	GGNNCC	3 cut(s)	68, 390, 434
BmrFI	CCNGG	3 cut(s)	44, 64, 443
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	26, 249
BsaHI	GRCGYC	2 cut(s)	11, 309
BsaJI	CCNNGG	2 cut(s)	312, 375
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 245, 275
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 214, 247, 398, 442
Bse8I	GATNNNNATC	2 cut(s)	26, 249
BseBI	CCWGG	3 cut(s)	44, 64, 443
BseDI	CCNNGG	2 cut(s)	312, 375
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	2 cut(s)	26, 249
BseLI	CCNNNNNNNGG	5 cut(s)	202, 214, 247, 398, 442
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	39, 345
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	228, 417
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	52, 265
BslI	CCNNNNNNNGG	5 cut(s)	202, 214, 247, 398, 442
BsmFI	GGGAC	2 cut(s)	52, 265
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	228, 417
Bsp143I	GATC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	68, 390, 434
BspPI	GGATC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	312, 375
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	2 cut(s)	11, 309
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	44, 64, 443
BstACI	GRCGYC	2 cut(s)	11, 309
BstDEI	CTNAG	1 cut(s)	447
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 207, 272
BstNI	CCWGG	3 cut(s)	44, 64, 443
BstSCI	CCNGG	3 cut(s)	42, 62, 441
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	39, 345
BtsCI	GGATG	1 cut(s)	159
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	66, 205, 388
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	7 cut(s)	38, 109, 286, 358, 402, 421, 446
CviKI_1	RGCY	7 cut(s)	38, 109, 286, 358, 402, 421, 446
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	66, 205, 388
Eco88I	CYCGRG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	42, 62, 441
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	307
FaiI	YATR	5 cut(s)	25, 35, 305, 465, 482
FaqI	GGGAC	2 cut(s)	52, 265
FatI	CATG	1 cut(s)	303
FauI	CCCGC	2 cut(s)	88, 277
Fnu4HI	GCNGC	6 cut(s)	53, 100, 196, 199, 273, 359
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	53, 100, 196, 199, 273, 359
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	6 cut(s)	53, 100, 196, 199, 273, 359
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	196
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	2 cut(s)	11, 309
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	260, 278, 424, 469
HphI	GGTGA	5 cut(s)	22, 115, 245, 340, 400
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	3 cut(s)	16, 182, 398
HpyAV	CCTTC	3 cut(s)	136, 175, 214
HpyCH4V	TGCA	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 207, 272
HpyF3I	CTNAG	1 cut(s)	447
Hsp92I	GRCGYC	2 cut(s)	11, 309
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	4 cut(s)	114, 119, 136, 223
Lsp1109I	GCAGC	2 cut(s)	39, 345
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	252
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	228, 417
MlyI	GAGTC	4 cut(s)	254, 287, 418, 463
MmeI	TCCRAC	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	44, 64, 443
MvaI	CCWGG	3 cut(s)	44, 64, 443
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	99, 207, 272
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	3 cut(s)	68, 390, 434
NmeAIII	GCCGAG	2 cut(s)	301, 337
NmuCI	GTSAC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 186
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	6 cut(s)	54, 101, 197, 200, 274, 360
PleI	GAGTC	4 cut(s)	254, 286, 418, 463
PpsI	GAGTC	4 cut(s)	254, 286, 418, 463
Psp6I	CCWGG	3 cut(s)	42, 62, 441
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	3 cut(s)	42, 62, 441
PspN4I	GGNNCC	3 cut(s)	68, 390, 434
PspPI	GGNCC	3 cut(s)	66, 205, 388
PsyI	GACNNNGTC	1 cut(s)	392
SatI	GCNGC	6 cut(s)	53, 100, 196, 199, 273, 359
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	66, 205, 388
SchI	GAGTC	4 cut(s)	254, 287, 418, 463
ScrFI	CCNGG	3 cut(s)	44, 64, 443
SduI	GDGCHC	2 cut(s)	228, 417
SinI	GGWCC	3 cut(s)	66, 205, 388
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	42, 62, 441
StyI	CCWWGG	1 cut(s)	375
TaqI	TCGA	6 cut(s)	168, 189, 231, 237, 243, 396
TauI	GCSGC	4 cut(s)	102, 198, 201, 275
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	52, 358
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	66, 205, 388
XagI	CCTNNNNNAGG	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.