Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

2876698 .. 2878753

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCTCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTAGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTGAGAGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATGATGTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTGCCATATTAGGTGAGAAACTATCAGCGGAAGATGAAGAAGAGATCTTAGCAGAATTCGACAACCTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTCATGCCTGAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAATGAAACCACTTCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

216

Amino Acids

24.61

Weight (kDa)

4.78

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 195	1.2e-42	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	7, 470
AcuI	CTGAAG	2 cut(s)	534, 561
AgsI	TTSAA	7 cut(s)	119, 187, 217, 365, 503, 612, 632
AluBI	AGCT	6 cut(s)	82, 103, 134, 303, 532, 647
AluI	AGCT	6 cut(s)	82, 103, 134, 303, 532, 647
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	7, 470
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	482
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	387, 393
Bse1I	ACTGG	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	387, 393
BseGI	GGATG	2 cut(s)	382, 412
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	30, 43, 226, 459, 559
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	387, 393
BssMI	GATC	5 cut(s)	30, 43, 226, 459, 559
BssT1I	CCWWGG	1 cut(s)	393
Bst6I	CTCTTC	2 cut(s)	201, 450
BstC8I	GCNNGC	3 cut(s)	80, 132, 281
BstDEI	CTNAG	2 cut(s)	413, 463
BstF5I	GGATG	2 cut(s)	382, 412
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	5 cut(s)	33, 46, 229, 462, 562
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	5 cut(s)	30, 43, 226, 459, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 329, 517, 590
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	459, 559
BstYI	RGATCY	2 cut(s)	459, 559
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	382, 412
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	236, 381
Cac8I	GCNNGC	3 cut(s)	80, 132, 281
CfoI	GCGC	1 cut(s)	78
CviAII	CATG	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	413, 463
DpnI	GATC	5 cut(s)	32, 45, 228, 461, 561
DpnII	GATC	5 cut(s)	30, 43, 226, 459, 559
Eam1104I	CTCTTC	2 cut(s)	201, 450
EarI	CTCTTC	2 cut(s)	201, 450
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	534, 561
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	538
FaiI	YATR	3 cut(s)	422, 509, 536
FatI	CATG	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	389, 419
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	80, 645
HinfI	GANTC	2 cut(s)	52, 334
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	3 cut(s)	16, 404, 629
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	137, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 329, 517, 590
HpyF3I	CTNAG	2 cut(s)	413, 463
Hsp92II	CATG	1 cut(s)	538
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	30, 43, 226, 459, 559
LpnPI	CCDG	6 cut(s)	154, 389, 525, 552, 579, 600
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	32, 45, 228, 461, 561
MboI	GATC	5 cut(s)	30, 43, 226, 459, 559
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	2 cut(s)	459, 559
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	5 cut(s)	7, 114, 254, 324, 470
MnlI	CCTC	3 cut(s)	31, 337, 382
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	3 cut(s)	146, 305, 327
MspA1I	CMGCKG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	179, 329, 517, 590
NdeII	GATC	5 cut(s)	30, 43, 226, 459, 559
NlaIII	CATG	1 cut(s)	538
NmeAIII	GCCGAG	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	52, 334
PkrI	GCNGC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	459, 559
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	146, 305, 327
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	30, 43, 226, 459, 559
SduI	GDGCHC	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	7, 114, 254, 324, 470
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	393
TaqI	TCGA	4 cut(s)	46, 246, 267, 474
TasI	AATT	5 cut(s)	7, 114, 254, 324, 470
TfiI	GAWTC	2 cut(s)	52, 334
Tru1I	TTAA	3 cut(s)	146, 305, 327
Tru9I	TTAA	3 cut(s)	146, 305, 327
TscAI	CASTG	2 cut(s)	236, 388
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	423, 465, 615
TspGWI	ACGGA	3 cut(s)	50, 140, 211
TspRI	CASTG	2 cut(s)	236, 388
XapI	RAATTY	2 cut(s)	7, 470
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.