Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

4365355 .. 4368271

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGAACTTGTTGGTGAAGAAACCCAAGATCACCGAAGTTGATAGAGCTATTCTCTCTCTGAAGACCCAGAGACGCAAACTTGCTCAGTACCAACAACAGCTGGAGGCTGTAATTGAAGCAGAAAAGCAAGCTGCATGGGACTTGATTCGTGAAAAGAAAAAGCAAAGAGCATTGTTAGCATTAAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTAGATACCTGGCTTATTAATGTTGAGCAACAGTTGCAAGATATTGAACTAACAAGCAAGCAGAAAACTGTATTTGAGAGTTTGAAGGCCGGTAATAATGCAATTAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGATGAAGCGAAAGCTTACCAAGATGAAATTAATGCAATCTTGGGGGAGAAATTGTCAACAGAAGATGAAGATGAAATTTTAGCAGAATTTGAGAACTTGGAAGCTCAGATCACTGTTCAAGATCTGCCTGAAGCACCTTCTTCGGAACCATCCCTTGAAGAAGATGAGAAGTTGGACCTTCCAAATGTACCAACCAAAGCGCCAGTTTCTGCCAAAACTAAAGTTACGGAGGAACCGCTGTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

4.74

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 195	5.2e-41	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	620
AcsI	RAATTY	2 cut(s)	459, 470
AcuI	CTGAAG	2 cut(s)	83, 534
AfaI	GTAC	2 cut(s)	92, 573
AgsI	TTSAA	6 cut(s)	119, 269, 307, 365, 503, 542
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	7 cut(s)	50, 103, 134, 332, 370, 398, 488
AluI	AGCT	7 cut(s)	50, 103, 134, 332, 370, 398, 488
Alw26I	GTCTC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	459, 470
AseI	ATTAAT	2 cut(s)	240, 414
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	25, 28
AvaII	GGWCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	541
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	587
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	531, 618
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	364, 382, 533
BseMII	CTCAG	2 cut(s)	101, 503
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	30, 345, 492, 505
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	100, 502
BspLI	GGNNCC	2 cut(s)	531, 618
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	4 cut(s)	30, 345, 492, 505
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	255, 292, 499
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	132, 281
BstDEI	CTNAG	2 cut(s)	87, 489
BstF5I	GGATG	3 cut(s)	364, 382, 533
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	33, 348, 495, 508
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	30, 345, 492, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	364, 382, 533
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	132, 281
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	559
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	91, 572
CviAII	CATG	1 cut(s)	138
CviQI	GTAC	2 cut(s)	91, 572
DdeI	CTNAG	2 cut(s)	87, 489
DpnI	GATC	4 cut(s)	32, 347, 494, 507
DpnII	GATC	4 cut(s)	30, 345, 492, 505
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	83, 534
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	141
FaiI	YATR	2 cut(s)	139, 335
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	3 cut(s)	371, 389, 520
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	2 cut(s)	25, 28
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	3 cut(s)	63, 492, 529
Hpy188III	TCNNGA	2 cut(s)	152, 503
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	3 cut(s)	301, 531, 572
HpyCH4III	ACNGT	3 cut(s)	255, 292, 499
HpyCH4V	TGCA	4 cut(s)	137, 259, 323, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	2 cut(s)	87, 489
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	4 cut(s)	30, 345, 492, 505
LpnPI	CCDG	7 cut(s)	83, 89, 217, 244, 325, 525, 600
Lsp1109I	GCAGC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	32, 347, 494, 507
MboI	GATC	4 cut(s)	30, 345, 492, 505
MboII	GAAGA	9 cut(s)	31, 76, 202, 218, 458, 464, 516, 554, 557
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	7 cut(s)	114, 209, 324, 411, 434, 459, 470
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	3 cut(s)	100, 349, 607
MseI	TTAA	5 cut(s)	185, 215, 240, 327, 414
MspA1I	CMGCKG	2 cut(s)	103, 622
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NdeII	GATC	4 cut(s)	30, 345, 492, 505
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	531, 618
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	136
PshBI	ATTAAT	2 cut(s)	240, 414
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	531, 618
PspPI	GGNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	92, 573
RsaNI	GTAC	2 cut(s)	91, 572
SaqAI	TTAA	5 cut(s)	185, 215, 240, 327, 414
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	30, 345, 492, 505
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	7 cut(s)	114, 209, 324, 411, 434, 459, 470
SsiI	CCGC	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	3 cut(s)	255, 292, 499
TasI	AATT	7 cut(s)	114, 209, 324, 411, 434, 459, 470
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	5 cut(s)	185, 215, 240, 327, 414
Tru9I	TTAA	5 cut(s)	185, 215, 240, 327, 414
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	402, 423, 465, 471
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	559
VspI	ATTAAT	2 cut(s)	240, 414
XapI	RAATTY	2 cut(s)	459, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.