Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

465064 .. 465555

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000105.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggggaacttgttggtgaagaaacccaagatcactgaagttgatcgagctattctctctctagagacccagagacacaaacttgctcagtaccaacaacagcttgaggctgtaattgaagcagaaaagcaagttgcaagggacttgattcgtgaaaagaaaaaggaaagagcattgttagcattaaagaagaaaaaggcacaagaagaattattaaagcaagtagatacctgggttattaatgttgagcaacagctgcaagatattgaactaacaagcaagcagaaagctgtatttgagagtttgaaggccggtaataatacaattaaagctatacaaagtgagatcaaccttgaggatgttcaaaagctaatggatgatactgatcaagcaaaagcttaccaagatgaaattaatgcaatcttgggggagaaattatcaacagaagatgaagaggaaattttggcagaatttgagaaattggaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

163

Amino Acids

18.73

Weight (kDa)

5.0

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	459, 470
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	119, 269, 307, 365
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	8 cut(s)	50, 103, 256, 290, 332, 370, 398, 488
AluI	AGCT	8 cut(s)	50, 103, 256, 290, 332, 370, 398, 488
Alw26I	GTCTC	2 cut(s)	59, 67
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	459, 470
AseI	ATTAAT	2 cut(s)	240, 414
AsuHPI	GGTGA	1 cut(s)	28
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbvI	GCAGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	59, 67
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpuEI	CTTGAG	2 cut(s)	125, 374
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	364, 382
BseJI	GATNNNNATC	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	59, 67
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	30, 43, 345, 385
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	30, 43, 345, 385
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	87, 489
BstF5I	GGATG	2 cut(s)	364, 382
BstKTI	GATC	4 cut(s)	33, 46, 348, 388
BstMAI	GTCTC	2 cut(s)	59, 67
BstMBI	GATC	4 cut(s)	30, 43, 345, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 256
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	364, 382
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	91
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	87, 489
DpnI	GATC	4 cut(s)	32, 45, 347, 387
DpnII	GATC	4 cut(s)	30, 43, 345, 385
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	230
FaiI	YATR	1 cut(s)	335
FaqI	GGGAC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	2 cut(s)	371, 389
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	396, 486
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	62, 152
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	137, 259, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 256
HpyF3I	CTNAG	2 cut(s)	87, 489
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	30, 43, 345, 385
LpnPI	CCDG	4 cut(s)	83, 217, 244, 325
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	62
MalI	GATC	4 cut(s)	32, 45, 347, 387
MboI	GATC	4 cut(s)	30, 43, 345, 385
MboII	GAAGA	5 cut(s)	31, 202, 218, 458, 464
MluCI	AATT	8 cut(s)	114, 209, 324, 411, 434, 459, 470, 479
MnlI	CCTC	3 cut(s)	100, 349, 448
MseI	TTAA	5 cut(s)	185, 215, 240, 327, 414
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	179, 256
NdeII	GATC	4 cut(s)	30, 43, 345, 385
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	258
PshBI	ATTAAT	2 cut(s)	240, 414
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	5 cut(s)	185, 215, 240, 327, 414
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	4 cut(s)	30, 43, 345, 385
ScrFI	CCNGG	1 cut(s)	232
SmlI	CTYRAG	2 cut(s)	104, 353
SmoI	CTYRAG	2 cut(s)	104, 353
Sse9I	AATT	8 cut(s)	114, 209, 324, 411, 434, 459, 470, 479
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	1 cut(s)	46
TasI	AATT	8 cut(s)	114, 209, 324, 411, 434, 459, 470, 479
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	5 cut(s)	185, 215, 240, 327, 414
Tru9I	TTAA	5 cut(s)	185, 215, 240, 327, 414
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	423, 465
TspRI	CASTG	1 cut(s)	40
VspI	ATTAAT	2 cut(s)	240, 414
XapI	RAATTY	2 cut(s)	459, 470
XbaI	TCTAGA	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.