Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Reverse (-)

29771682 .. 29776017

Gene Structure 4336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGGAATTTGTTCGTGAAGAAACCCAAGATCACCGATGTCGATCGAGCTATTCTCTCTCTCAAGACCCAGAGACGCAAGCTCGGTCAATACCAACAACAGCTTGAAGCTGTAATTGAAGCAGAAAAGCAGGCTGCAAGGGACTTGATTCGTGATAAGAAAAAGGAAAGAGCCTTACTAGCATTGAAGAAGAAAAAGGCACAAGAAGAATTATTGAAGCAAGTAGATACCTGGGTTATTAATGTTGAGCAACAATTGCAAGATATTGAACTATCAAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGGCCGGTAATAATGCAATTAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGAGGAAGCTAAAGTTTACCAAGATGAAATTAGTGCAATTTTGGGGGAGAAATTATCAACCGAAGATGAAGAGGAAATTTTAGCAGAATTTGACAACTTGGAAGCTCAGGTATGTACTTTTTATTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

171

Amino Acids

19.64

Weight (kDa)

5.08

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 164	2.8e-37	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	7, 459, 470
AfaI	GTAC	1 cut(s)	499
AgsI	TTSAA	8 cut(s)	107, 119, 187, 217, 269, 307, 365, 511
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	9 cut(s)	50, 82, 103, 110, 290, 332, 370, 392, 488
AluI	AGCT	9 cut(s)	50, 82, 103, 110, 290, 332, 370, 392, 488
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	7, 459, 470
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	25
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	47, 374
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	364, 382
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	375, 503
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	30, 43, 345
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	376, 502
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	30, 43, 345
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	80, 132, 281
BstDEI	CTNAG	2 cut(s)	384, 489
BstF5I	GGATG	2 cut(s)	364, 382
BstKTI	GATC	3 cut(s)	33, 46, 348
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	30, 43, 345
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	364, 382
Cac8I	GCNNGC	3 cut(s)	80, 132, 281
Cfr10I	RCCGGY	1 cut(s)	311
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	498
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	2 cut(s)	384, 489
DpnI	GATC	3 cut(s)	32, 45, 347
DpnII	GATC	3 cut(s)	30, 43, 345
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	2 cut(s)	335, 496
FaqI	GGGAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	371, 389
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188III	TCNNGA	3 cut(s)	16, 64, 152
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	137, 259, 323, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	2 cut(s)	384, 489
Kzo9I	GATC	3 cut(s)	30, 43, 345
LpnPI	CCDG	6 cut(s)	83, 116, 217, 244, 325, 476
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	179
MalI	GATC	3 cut(s)	32, 45, 347
MboI	GATC	3 cut(s)	30, 43, 345
MboII	GAAGA	6 cut(s)	31, 199, 202, 218, 458, 464
MfeI	CAATTG	1 cut(s)	254
MnlI	CCTC	3 cut(s)	349, 379, 448
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	240, 327
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NdeII	GATC	3 cut(s)	30, 43, 345
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	240, 327
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	30, 43, 345
ScrFI	CCNGG	1 cut(s)	232
SmlI	CTYRAG	2 cut(s)	62, 353
SmoI	CTYRAG	2 cut(s)	62, 353
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	2 cut(s)	42, 46
TaqII	GACCGA	1 cut(s)	74
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	240, 327
Tru9I	TTAA	2 cut(s)	240, 327
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	423, 465
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	3 cut(s)	7, 459, 470
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.