Rh1BG064700

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007790
Physical Location & Seq
Forward (+)
9852339 .. 9853538
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG064700.1

Sequence Viewer

Length: 681 bp
ATGAAGGTCTTCTTCACTGGACTGAGCTTTGTGGGCGACTTGGACTCCAATCTCAGCACCAGGAGTAATAGATGGGAAACTTGTTGGGGAAGAAACCCAAGATCACTGAAGTTGATCAAGACCCAGAGACGCAAACTTGCTCAGTACCAACAACAGCTTGAGGTTGTAATTGAAGCAGAAAAGCAAGCTGCAAGGGACTTGATTCGTGAAAAGAAAAAGGAAAGAGCATTGTTAGCATTAAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTAGATACCTGGGTTATTAATGTTGAGCAACAGTTGCAAGATATTGAACTAACAAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGGCCGGTAATAATGCAATTAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGATGAAGCAAAAGCTTACCAAGATGAAATTAATGCAATCTTGGGGGAGAAATTATCAACAGAAGATGAAGAGGACATTTTGGCAAAATTTGAGAAATTGGAAGCTCAGATCACTATTCAAGATCTGCCTGAAGCACCTTCTTCAGTGCCATCCTTTCATGAGAAGTTGGACCTTCCAAACGTGCCAACCAAAGCACCAGTTTCTGCTAAGAGTAGAGTTATGGAGGAACCGGTGTTGGCTTGA

Protein Analysis

226

Amino Acids

25.75

Weight (kDa)

5.39

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 39 - 211 1e-39 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 3 cut(s) 128, 564, 588
AfaI GTAC 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 667
AgsI TTSAA 5 cut(s) 173, 323, 361, 419, 557
AjnI CCWGG 2 cut(s) 59, 284
AluBI AGCT 8 cut(s) 27, 157, 188, 344, 386, 424, 452, 542
AluI AGCT 8 cut(s) 27, 157, 188, 344, 386, 424, 452, 542
Alw26I GTCTC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 524
AseI ATTAAT 2 cut(s) 294, 468
AsiGI ACCGGT 1 cut(s) 667
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 607
AvaII GGWCC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 66, 595
BciT130I CCWGG 2 cut(s) 61, 286
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 121
BglII AGATCT 1 cut(s) 559
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 61, 286
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 2 cut(s) 61, 286
BpuEI CTTGAG 2 cut(s) 179, 428
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse118I RCCGGY 2 cut(s) 365, 667
Bse1I ACTGG 2 cut(s) 22, 635
BseBI CCWGG 2 cut(s) 61, 286
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 3 cut(s) 418, 436, 587
BseMII CTCAG 4 cut(s) 14, 67, 155, 557
BseNI ACTGG 2 cut(s) 22, 635
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 365
BshTI ACCGGT 1 cut(s) 667
BsiSI CCGG 2 cut(s) 366, 668
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 365
Bsp143I GATC 5 cut(s) 101, 114, 399, 546, 559
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 4 cut(s) 15, 66, 154, 556
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 666
BsrFI RCCGGY 2 cut(s) 365, 667
BsrI ACTGG 2 cut(s) 22, 635
BssAI RCCGGY 2 cut(s) 365, 667
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 5 cut(s) 101, 114, 399, 546, 559
Bst2UI CCWGG 2 cut(s) 61, 286
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 186, 335
BstDEI CTNAG 5 cut(s) 23, 53, 141, 543, 645
BstF5I GGATG 3 cut(s) 418, 436, 587
BstKTI GATC 5 cut(s) 104, 117, 402, 549, 562
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 101, 114, 399, 546, 559
BstMWI GCNNNNNNNGC 4 cut(s) 33, 233, 310, 383
BstNI CCWGG 2 cut(s) 61, 286
BstSCI CCNGG 2 cut(s) 59, 284
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 3 cut(s) 418, 436, 587
BtsIMutI CAGTG 3 cut(s) 15, 104, 588
Cac8I GCNNGC 2 cut(s) 186, 335
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 595
Cfr10I RCCGGY 2 cut(s) 365, 667
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 667
CviAII CATG 1 cut(s) 596
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 5 cut(s) 23, 53, 141, 543, 645
DpnI GATC 5 cut(s) 103, 116, 401, 548, 561
DpnII GATC 5 cut(s) 101, 114, 399, 546, 559
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 3 cut(s) 128, 564, 588
EcoRII CCWGG 2 cut(s) 59, 284
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 599
FaiI YATR 3 cut(s) 389, 597, 659
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 3 cut(s) 425, 443, 574
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 365
HapII CCGG 2 cut(s) 366, 668
HgaI GACGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 599
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 2 cut(s) 44, 202
HpaII CCGG 2 cut(s) 366, 668
Hpy188I TCNGA 1 cut(s) 546
Hpy188III TCNNGA 4 cut(s) 118, 206, 557, 596
HpyAV CCTTC 3 cut(s) 355, 585, 620
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 4 cut(s) 191, 313, 377, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 233, 310, 383
HpyF3I CTNAG 5 cut(s) 23, 53, 141, 543, 645
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 5 cut(s) 101, 114, 399, 546, 559
LpnPI CCDG 9 cut(s) 3, 46, 73, 137, 271, 298, 379, 579, 648
Lsp1109I GCAGC 1 cut(s) 175
MaeII ACGT 1 cut(s) 618
MalI GATC 5 cut(s) 103, 116, 401, 548, 561
MboI GATC 5 cut(s) 101, 114, 399, 546, 559
MboII GAAGA 7 cut(s) 4, 102, 256, 272, 512, 518, 570
MflI RGATCY 1 cut(s) 559
MluCI AATT 7 cut(s) 168, 263, 378, 465, 488, 524, 533
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 4 cut(s) 154, 403, 502, 655
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 5 cut(s) 239, 269, 294, 381, 468
MspI CCGG 2 cut(s) 366, 668
MspR9I CCNGG 2 cut(s) 61, 286
MvaI CCWGG 2 cut(s) 61, 286
MwoI GCNNNNNNNGC 4 cut(s) 33, 233, 310, 383
NdeII GATC 5 cut(s) 101, 114, 399, 546, 559
NlaIII CATG 1 cut(s) 599
NlaIV GGNNCC 1 cut(s) 666
PagI TCATGA 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 202
PinAI ACCGGT 1 cut(s) 667
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PshBI ATTAAT 2 cut(s) 294, 468
Psp6I CCWGG 2 cut(s) 59, 284
PspGI CCWGG 2 cut(s) 59, 284
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 5 cut(s) 239, 269, 294, 381, 468
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 101, 114, 399, 546, 559
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 61, 286
SinI GGWCC 1 cut(s) 607
SmlI CTYRAG 2 cut(s) 158, 407
SmoI CTYRAG 2 cut(s) 158, 407
Sse9I AATT 7 cut(s) 168, 263, 378, 465, 488, 524, 533
StyD4I CCNGG 2 cut(s) 59, 284
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 1 cut(s) 621
TasI AATT 7 cut(s) 168, 263, 378, 465, 488, 524, 533
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 5 cut(s) 239, 269, 294, 381, 468
Tru9I TTAA 5 cut(s) 239, 269, 294, 381, 468
TscAI CASTG 3 cut(s) 22, 111, 588
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 5 cut(s) 17, 456, 477, 519, 584
TspRI CASTG 3 cut(s) 22, 111, 588
VpaK11BI GGWCC 1 cut(s) 607
VspI ATTAAT 2 cut(s) 294, 468
XapI RAATTY 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.