Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

22830157 .. 22834943

Gene Structure 4787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGGAATTTATTCGTGAAGAAGCCCAAGATCACCGAGGTCGATCGAGCTATTCTCTCTCTCAAGACTCAGAGACGCAAGCTTGCTCAGTACCAACAACAGCTTGAAGCTGTAATTGAAGCCGAAAAGCAAGCTGCAAGGGATTTGATTCGTGAAAAGAAAAAGGAAAGAGCTTTGTTAGCACTAAAGAAGAAAAAAGCACAAGAAGACTTATTGAAGCAAGTGGATACCTGGGTTATCAATGTTGAGCAACAGTTGCTAGATATTGAACTGACAAGCAAGCAGCAAGCTGTATTTGAGAGTTTGAAGGCTGGTAATAATGCGATTAAAGCCATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGATGAAGCTAAAGCTTACCAAGATGAAATTAATGCAATCTTGGGGGAGAAATTATCAGCAGAAGATGAAGAGGATATTTTGGCAGAATTTGAGAATTTGGAAGCTCAGATTACTGTTCAAGATCTGCCTAAAGTTCCTGCTTCTGTGGTGTCTCTTCAAAGGGATGAGGAGTTAGACCTTCCCGATGTACCAACCAAAGCACCAGATGCAGTCACATATGATACCGAAGTTTCCTCTAAGAAAAAAGTTATGGAAGAACCATTGGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

219

Amino Acids

24.64

Weight (kDa)

4.74

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	7, 470, 478
AfaI	GTAC	2 cut(s)	92, 573
AgsI	TTSAA	8 cut(s)	107, 119, 217, 269, 307, 365, 503, 542
AjnI	CCWGG	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	67, 540
ApeKI	GCWGC	2 cut(s)	134, 283
ApoI	RAATTY	3 cut(s)	7, 470, 478
AseI	ATTAAT	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	25
BaeI	ACNNNNGTAYC	4 cut(s)	219, 252, 597, 630
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	121, 295
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	67, 540
BfaI	CTAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	2 cut(s)	135, 284
BlsI	GCNGC	2 cut(s)	136, 285
Bme1390I	CCNGG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpuEI	CTTGAG	2 cut(s)	47, 374
BsaJI	CCNNGG	2 cut(s)	36, 231
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	36, 231
BseGI	GGATG	3 cut(s)	364, 382, 553
BseMII	CTCAG	3 cut(s)	83, 101, 503
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	121, 295
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	67, 540
BsmBI	CGTCTC	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	30, 43, 345, 505
BspCNI	CTCAG	3 cut(s)	82, 100, 502
BssECI	CCNNGG	2 cut(s)	36, 231
BssMI	GATC	4 cut(s)	30, 43, 345, 505
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	255, 499
Bst6I	CTCTTC	2 cut(s)	447, 543
BstAPI	GCANNNNNTGC	2 cut(s)	256, 590
BstC8I	GCNNGC	5 cut(s)	80, 84, 132, 281, 288
BstDEI	CTNAG	4 cut(s)	69, 87, 489, 621
BstF5I	GGATG	3 cut(s)	364, 382, 553
BstKTI	GATC	4 cut(s)	33, 46, 348, 508
BstMAI	GTCTC	2 cut(s)	67, 540
BstMBI	GATC	4 cut(s)	30, 43, 345, 505
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 590
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	121, 295
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	364, 382, 553
Cac8I	GCNNGC	5 cut(s)	80, 84, 132, 281, 288
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	91, 572
CviQI	GTAC	2 cut(s)	91, 572
DdeI	CTNAG	4 cut(s)	69, 87, 489, 621
DpnI	GATC	4 cut(s)	32, 45, 347, 507
DpnII	GATC	4 cut(s)	30, 43, 345, 505
Eam1104I	CTCTTC	2 cut(s)	447, 543
EarI	CTCTTC	2 cut(s)	447, 543
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	4 cut(s)	335, 601, 603, 635
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	135, 284
FokI	GGATG	3 cut(s)	371, 389, 560
Fsp4HI	GCNGC	2 cut(s)	135, 284
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	135, 284
HgaI	GACGC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	80, 396
HinfI	GANTC	2 cut(s)	67, 148
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	72, 492
Hpy188III	TCNNGA	5 cut(s)	16, 64, 152, 503, 566
HpyAV	CCTTC	2 cut(s)	301, 572
HpyCH4III	ACNGT	2 cut(s)	255, 499
HpyCH4V	TGCA	3 cut(s)	137, 419, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 590
HpyF3I	CTNAG	4 cut(s)	69, 87, 489, 621
Kzo9I	GATC	4 cut(s)	30, 43, 345, 505
LpnPI	CCDG	5 cut(s)	217, 244, 297, 534, 600
Lsp1109I	GCAGC	2 cut(s)	121, 295
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	32, 45, 347, 507
MboI	GATC	4 cut(s)	30, 43, 345, 505
MboII	GAAGA	7 cut(s)	31, 202, 218, 458, 464, 530, 650
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	6 cut(s)	7, 114, 411, 434, 470, 478
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	31, 349, 448, 544, 628
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	327, 414
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 590
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	4 cut(s)	30, 43, 345, 505
NmuCI	GTSAC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	136, 285
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	92, 573
RsaNI	GTAC	2 cut(s)	91, 572
SaqAI	TTAA	2 cut(s)	327, 414
SatI	GCNGC	2 cut(s)	135, 284
Sau3AI	GATC	4 cut(s)	30, 43, 345, 505
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	62, 353
SmoI	CTYRAG	2 cut(s)	62, 353
Sse9I	AATT	6 cut(s)	7, 114, 411, 434, 470, 478
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	255, 499
TaqI	TCGA	2 cut(s)	42, 46
TasI	AATT	6 cut(s)	7, 114, 411, 434, 470, 478
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	327, 414
Tru9I	TTAA	2 cut(s)	327, 414
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	134, 283
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	402, 423, 465
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	3 cut(s)	7, 470, 478
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.