Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

1047247 .. 1049982

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g01040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGAAATTTGTTCGTGAAGAAGCCCAAGATCACGGAGGTAGATCGAGCTATTCTTTCTCTCAAGACCCAGAGGCGCAAACTTGCCCAGTACCAACAACAGCTTGAAGCTGTAATCGAAGCCGAAAAGCAAGCCGCACGGGATTTGATTCGTGACAAGAAAAAGGAAAGAGCTTTGTTAGCATTAAAGAAGAAGAAGGCACAAGAAGAATTATTGAAGCAAGTTGATACCTGGGTTATTAATGTTGAGCAACAATTGCAAGACATCGAACTCACAAGCAAGCAGAAAGCGGTGTTCGAGAGTTTGAAGGCTGGTAATAATGCGATTAAAGCCTTACAAAGTGAGATCAATCTCGACGATGTGCAAAAGCTGATGGATGATACTGAGGAAGCTAAAGCTTACCAAGATGAAATTAATGCAATCTTGGGGGAGAAATTATCAGCAGAAGACGAAGAGGATATTATAGCAGAATTAGAGAATTTGGAAGCTCAGATCACCGTTCAAGATATGCATATAGCTCCTGCTTCAGTGCTATCTCCTAAAGAAAACGAGAGGTTGGACCTTCCCGATGTACCAATCAAAGTACCAGTTGCACCTGATCCGGTTGCGAATGATGAAGTTTCCACTAAGACAAAAGTTATGGAGGAACCATTGGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

221

Amino Acids

24.77

Weight (kDa)

4.83

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 192	7.6e-41	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 290
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	2 cut(s)	7, 478
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	92, 573, 585
AgsI	TTSAA	4 cut(s)	107, 217, 307, 503
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	9 cut(s)	50, 103, 110, 173, 370, 392, 398, 488, 518
AluI	AGCT	9 cut(s)	50, 103, 110, 173, 370, 392, 398, 488, 518
AlwI	GGATC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	7, 478
AseI	ATTAAT	2 cut(s)	240, 414
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	601
Bse1I	ACTGG	2 cut(s)	88, 587
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	375, 503
BseNI	ACTGG	2 cut(s)	88, 587
BsiSI	CCGG	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	30, 43, 345, 492, 598
BspACI	CCGC	2 cut(s)	135, 290
BspCNI	CTCAG	2 cut(s)	376, 502
BspLI	GGNNCC	1 cut(s)	648
BspPI	GGATC	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	88, 587
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	30, 43, 345, 492, 598
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	132, 281
BstDEI	CTNAG	3 cut(s)	384, 489, 627
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	5 cut(s)	33, 46, 348, 495, 601
BstMBI	GATC	5 cut(s)	30, 43, 345, 492, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	132, 281
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	91, 572, 584
CviQI	GTAC	3 cut(s)	91, 572, 584
DdeI	CTNAG	3 cut(s)	384, 489, 627
DpnI	GATC	5 cut(s)	32, 45, 347, 494, 600
DpnII	GATC	5 cut(s)	30, 43, 345, 492, 598
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	513
FaiI	YATR	5 cut(s)	464, 509, 513, 515, 641
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	135
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	7 cut(s)	16, 64, 152, 298, 353, 503, 566
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	190, 301, 572
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	259, 364, 419, 511, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	3 cut(s)	384, 489, 627
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	30, 43, 345, 492, 598
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	9 cut(s)	83, 101, 217, 244, 297, 534, 600, 609, 615
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	5 cut(s)	32, 45, 347, 494, 600
MboI	GATC	5 cut(s)	30, 43, 345, 492, 598
MboII	GAAGA	6 cut(s)	31, 202, 205, 218, 458, 464
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	7 cut(s)	7, 209, 254, 411, 434, 470, 478
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	6 cut(s)	31, 66, 379, 448, 546, 637
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	4 cut(s)	185, 240, 327, 414
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NdeII	GATC	5 cut(s)	30, 43, 345, 492, 598
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	136
PshBI	ATTAAT	2 cut(s)	240, 414
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	559
RsaI	GTAC	3 cut(s)	92, 573, 585
RsaNI	GTAC	3 cut(s)	91, 572, 584
SaqAI	TTAA	4 cut(s)	185, 240, 327, 414
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	30, 43, 345, 492, 598
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	7 cut(s)	7, 209, 254, 411, 434, 470, 478
SsiI	CCGC	2 cut(s)	135, 290
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	5 cut(s)	46, 117, 267, 297, 354
TasI	AATT	7 cut(s)	7, 209, 254, 411, 434, 470, 478
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	4 cut(s)	185, 240, 327, 414
Tru9I	TTAA	4 cut(s)	185, 240, 327, 414
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	423, 630
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	559
VspI	ATTAAT	2 cut(s)	240, 414
XapI	RAATTY	2 cut(s)	7, 478
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.